BAC Information

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BAC

Clone NameB6Ng01-071M08
Chromosome16 (Build37)
Map Location 16,526,794 - 16,681,211
singlet/doubletdoublet
Overlap geneFgd4, Olfr19
Upstream geneUbe2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream gene4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071M08.bB6Ng01-071M08.g
ACCDH889374DH889375
length1,1891,098
definitionDH889374|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M08, 5' end.DH889375|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,526,794 - 16,528,000)(16,680,121 - 16,681,211)
sequence
gaattcactctctgcaatatgcatggaaaccacagggacttaacactacc
attaacaaagtaaaacaacaacagccacaccgagtctctacaacattatc
tcacatgcctaaacaaggaacatgaaactccctcagaattctttatctag
gcaagactgaggttgtcgtaatttgtgtgacccacaggccacacgtcctc
ttttccatcagaaatatttctaaactttgttcacaccagaagcggaagca
aacggagaaactggttttgtcatctgcactccttctcttggcagctgagc
aagatttttagttggattctgttttttattaaccaaacaattttttattt
tcctaagtgcgagaaagcttcctaaaaaagacaaatgctgtgatggacta
gttattttaatcctgtaggtgaaaacaagaagctgaggcttatttttaac
tttaaataaaaccaaactctggcctggcacatggattcatcagcagtcca
cacagtaaaaacaacacgaaaggtacattagaaaatgcacctacttacct
catcagtgaacacaactccatggaacaatccactcggatttaataagaaa
atatctggcttttctctgctcatgtgtttaaaatctcgtgacttattagt
ggggaactggctggagttccgctgatgttctgccgactgctgcattctta
gacctcactgtgtaaggacaacccatgtattacttgctacacctccctgg
gggttgggctgctgctgtgttgctcaagggaaggagtagatgagaatgga
gagacatctacttataacagtgaaatacgcagtggagcagcacagaatct
tcaagtacaattgagaatctgatgctttgtaagcgcaacagtccttggga
caggctgcagggacacagctgttcctctcccgagttgctgccccggacaa
aagctgctacagatttgagatctggaaatgagattaacatctccagttga
atggacctcaagtgccattttgttactgtactttaatttttagccacaga
acactcatttggagaacaactgcacagaattactaaatagcaaaacattt
cctgaaaaaaaagtcttattcgagaatgactgtgaaattttactgcccca
cctaatatattggtaaataattgggagactttaattttt
gaattcttctgtgaacccatctgtctctgtactttttatccttcttggct
taattttgttggtctggctagatgtaaaagttcacccattcctttcaggt
tttcctgcttaacaaagtacaggtttataaaatattcctttataatattc
tcagcttcttaggttgtctgtttcagtgcttccccattcatttctgattt
tgttagtgtggatcctcatttttctatcttttgttgagccagagatcttg
ttgttttttttttcctaaaaatgcaactcttatattctttgaatatatat
actggtttgattatttcttgccaccaactggtttagatttggtttgttct
tggttttcccaagccattcatttgtacttgttctgtttttaatcaaggcc
ttagagctgcgaatgtccctgtggagttactaccaatgtgtcccagagga
tatgatatctttttttcatcttcagttagtttcaggaagtttcttttctt
tttggttttttctttcgttcttgatttcttcttagacagtcagggagact
cagcatgttagaatatataggaggacatgcatagactagctgccctatta
acttatttaaacatctttgtttttgttatatgtaatggctattatgctct
tccttcttaacacctttacagtctgctgtagagcatcataatgaactttc
cccacactaaccttaaagatctatcctgaacataagaaataataagggaa
atgcatggggctgtaggaagccctgtatgagtgaagcagtcagtgtacat
tatcttgacatgggctaagcctactgtggagtccaagacagctgggccat
gggaactgggcaaagctattattatacatgccaggctaaggaggaatgca
aagtttccttggaaattagagtaagaagtttataaatgggtgatctacat
gtgcaaagtctagaactttggtttcctactctggattttatagcctgaga
ctgtcaactacaaagactagctctttcctgtgttatactcattaggtacg
tctttattatcatgctgagttcaggttgttatggtatgttagaaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16526794_16528000
seq2: B6Ng01-071M08.b_46_1234

seq1  GAATTCACTCTCTGCAATATGCATGGAAACCACAGGGACTTAACACTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCTGCAATATGCATGGAAACCACAGGGACTTAACACTACC  50

seq1  ATTAACAAAGTAAAACAACAACAGCCACACCGAGTCTCTACAACATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAAGTAAAACAACAACAGCCACACCGAGTCTCTACAACATTATC  100

seq1  TCACATGCCTAAACAAGGAACATGAAACTCCCTCAGAATTCTTTATCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCCTAAACAAGGAACATGAAACTCCCTCAGAATTCTTTATCTAG  150

seq1  GCAAGACTGAGGTTGTCGTAATTTGTGTGACCCACAGGCCACACGTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACTGAGGTTGTCGTAATTTGTGTGACCCACAGGCCACACGTCCTC  200

seq1  TTTTCCATCAGAAATATTTCTAAACTTTGTTCACACCAGAAGCGGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCAGAAATATTTCTAAACTTTGTTCACACCAGAAGCGGAAGCA  250

seq1  AACGGAGAAACTGGTTTTGTCATCTGCACTCCTTCTCTTGGCAGCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGAAACTGGTTTTGTCATCTGCACTCCTTCTCTTGGCAGCTGAGC  300

seq1  AAGATTTTTAGTTGGATTCTGTTTTTTATTAACCAAACAATTTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTAGTTGGATTCTGTTTTTTATTAACCAAACAATTTTTTATTT  350

seq1  TCCTAAGTGCGAGAAAGCTTCCTAAAAAAGACAAATGCTGTGATGGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTGCGAGAAAGCTTCCTAAAAAAGACAAATGCTGTGATGGACTA  400

seq1  GTTATTTTAATCCTGTAGGTGAAAACAAGAAGCTGAGGCTTATTTTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTAATCCTGTAGGTGAAAACAAGAAGCTGAGGCTTATTTTTAAC  450

seq1  TTTAAATAAAACCAAACTCTGGCCTGGCACATGGATTCATCAGCAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAACCAAACTCTGGCCTGGCACATGGATTCATCAGCAGTCCA  500

seq1  CACAGTAAAAACAACACGAAAGGTACATTAGAAAATGCACCTACTTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAAACAACACGAAAGGTACATTAGAAAATGCACCTACTTACCT  550

seq1  CATCAGTGAACACAACTCCATGGAACAATCCACTCGGATTTAATAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGAACACAACTCCATGGAACAATCCACTCGGATTTAATAAGAAA  600

seq1  ATATCTGGCTTTTCTCTGCTCATGTGTTTAAAATCTCGTGACTTATTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGCTTTTCTCTGCTCATGTGTTTAAAATCTCGTGACTTATTAGT  650

seq1  GGGGAACTGGCTGGAGTTCCGCTGATGTTCTGCCGACTGCTGCATTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACTGGCTGGAGTTCCGCTGATGTTCTGCCGACTGCTGCATTCTTA  700

seq1  GACCTCACTGTGTAAGGACAACCCATGTATTACTTGCTACACCTCCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACTGTGTAAGGACAACCCATGTATTACTTGCTACACCTCCCTGG  750

seq1  GGGTTGGGCTGCTGCTGTGTTGCTCAAGGGAAGGAGTAGATGAGAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGGCTGCTGCTGTGTTGCTCAAGGGAAGGAGTAGATGAGAATGGA  800

seq1  GAGACATCTACTTATAACAGTGAAATACGCAGTGGAGCAGCACAGAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTACTTATAACAGTGAAATACGCAGTGGAGCAGCACAGAATCT  850

seq1  TCAAGTACAATTGAGAATCTGATGCTTTGTAAGCGCAACAGTCCTTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACAATTGAGAATCTGATGCTTTGTAAGCGCAACAGTCCTTGGGA  900

seq1  CAGGCTGCAGGGACACAGCTGTTCCTCTCCCGAGTTGCTGCCCCGGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCAGGGACACAGCTGTTCCTCTCCCGAGTTGCTGCCCCGGACAA  950

seq1  AAGCTGCTACAGATTTGAGATCTGGAAATGAAGATTAACATCTCCAGTTG  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCTGCTACAGATTTGAGATCTGGAAATG-AGATTAACATCTCCAGTTG  999

seq1  AATGGACCTCAAGTGCCATTTTGTTACTGTAACTTTATTTTTTAG-CACA  1049
      |||||||||||||||||||||||||||||| |||||| ||||||| ||||
seq2  AATGGACCTCAAGTGCCATTTTGTTACTGT-ACTTTAATTTTTAGCCACA  1048

seq1  GAACACTCATTTTGGAGAACAAACTGCACAGAATTACTAAATAGCACAAA  1099
      ||||||||| |||||||||| |||||||||||||||||||||||  ||||
seq2  GAACACTCA-TTTGGAGAAC-AACTGCACAGAATTACTAAATAG--CAAA  1094

seq1  ACAATTTCCTGAAAAAAAAAAGTCTTATTTCAGAAGATGAACTGGTAAAA  1149
      || ||||||||  ||||||||||||||||  |||  ||| ||||  ||| 
seq2  AC-ATTTCCTG--AAAAAAAAGTCTTATTCGAGA--ATG-ACTGTGAAA-  1137

seq1  ATATTTACTGCCCATCATAATATATATGTTACATAATTGGGAAAGGACTT  1199
         ||||||||||  | |||||||| || || ||||||||||   |||||
seq2  --TTTTACTGCCCCACCTAATATAT-TGGTAAATAATTGGGA---GACTT  1181

seq1  TAATTTTT  1207
      ||||||||
seq2  TAATTTTT  1189

seq1: chr16_16680121_16681211
seq2: B6Ng01-071M08.g_87_1166 (reverse)

seq1  GGTTTTCTAACACTACCATTACAACCTGGAACCTCAGCATGATAATAAAG  50
      |||||||||||| |||||| ||||||||  | ||||||||||||||||||
seq2  GGTTTTCTAACA-TACCATAACAACCTG--AACTCAGCATGATAATAAAG  47

seq1  ACGTACCTAATGAGGTATAACACAGGGGAAAGAGCTAGTCTTTGTAGTTG  100
      ||||||||||||| ||||||||||  ||||||||||||||||||||||||
seq2  ACGTACCTAATGA-GTATAACACA--GGAAAGAGCTAGTCTTTGTAGTTG  94

seq1  AACAGTCTCAGGCTATAAAATCCAGGAGTAGGAAACCAAAGTTTCTAGAC  150
       ||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  -ACAGTCTCAGGCTATAAAATCCA-GAGTAGGAAACCAAAG-TTCTAGAC  141

seq1  TTTGCACATGTAGATCAACCATTTATAAACCTTCTTACTCTAATTTCCAA  200
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TTTGCACATGTAGATCACCCATTTATAAA-CTTCTTACTCTAATTTCCAA  190

seq1  GGAAAACTTTGCATTCCTCCTTAGCCTGGCATGTATAATAATAGCTTTGC  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-AAACTTTGCATTCCTCCTTAGCCTGGCATGTATAATAATAGCTTTGC  239

seq1  CCAGTTCCCATGGCCCAGCTGTCTTGGACTCCACAGTAGGCTTAGCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCCATGGCCCAGCTGTCTTGGACTCCACAGTAGGCTTAGCCCAT  289

seq1  GTCAAGATAATGTACACTGACTGCTTCACTCATACAGGGCTTCCTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATAATGTACACTGACTGCTTCACTCATACAGGGCTTCCTACAGC  339

seq1  CCCATGCATTTCCCTTATTATTTCTTATGTTCAGGATAGATCTTTAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCATTTCCCTTATTATTTCTTATGTTCAGGATAGATCTTTAAGGT  389

seq1  TAGTGTGGGGAAAGTTCATTATGATGCTCTACAGCAGACTGTAAAGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGGGAAAGTTCATTATGATGCTCTACAGCAGACTGTAAAGGTGT  439

seq1  TAAGAAGGAAGAGCATAATAGCCATTACATATAACAAAAACAAAGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGAAGAGCATAATAGCCATTACATATAACAAAAACAAAGATGTT  489

seq1  TAAATAAGTTAATAGGGCAGCTAGTCTATGCATGTCCTCCTATATATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTTAATAGGGCAGCTAGTCTATGCATGTCCTCCTATATATTCT  539

seq1  AACATGCTGAGTCTCCCTGACTGTCTAAGAAGAAATCAAGAACGAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTGAGTCTCCCTGACTGTCTAAGAAGAAATCAAGAACGAAAGAA  589

seq1  AAAACCAAAAAGAAAAGAAACTTCCTGAAACTAACTGAAGATGAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAGAAAAGAAACTTCCTGAAACTAACTGAAGATGAAAAAAA  639

seq1  GATATCATATCCTCTGGGACACATTGGTAGTAACTCCACAGGGACATTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATATCCTCTGGGACACATTGGTAGTAACTCCACAGGGACATTCG  689

seq1  CAGCTCTAAGGCCTTGATTAAAAACAGAACAAGTACAAATGAATGGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTAAGGCCTTGATTAAAAACAGAACAAGTACAAATGAATGGCTTG  739

seq1  GGAAAACCAAGAACAAACCAAATCTAAACCAGTTGGTGGCAAGAAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCAAGAACAAACCAAATCTAAACCAGTTGGTGGCAAGAAATAAT  789

seq1  CAAACCAGTATATATATTCAAAGAATATAAGAGTTGCATTTTTAGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGTATATATATTCAAAGAATATAAGAGTTGCATTTTTAGGAAAA  839

seq1  AAAAAACAACAAGATCTCTGGCTCAACAAAAGATAGAAAAATGAGGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAACAAGATCTCTGGCTCAACAAAAGATAGAAAAATGAGGATCC  889

seq1  ACACTAACAAAATCAGAAATGAATGGGGAAGCACTGAAACAGACAACCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACAAAATCAGAAATGAATGGGGAAGCACTGAAACAGACAACCTA  939

seq1  AGAAGCTGAGAATATTATAAAGGAATATTTTATAAACCTGTACTTTGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGAGAATATTATAAAGGAATATTTTATAAACCTGTACTTTGTTA  989

seq1  AGCAGGAAAACCTGAAAGGAATGGGTGAACTTTTACATCTAGCCAGACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAAACCTGAAAGGAATGGGTGAACTTTTACATCTAGCCAGACCA  1039

seq1  ACAAAATTAAGCCAAGAAGGATAAAAAGTACAGAGACAGAT  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAAGCCAAGAAGGATAAAAAGTACAGAGACAGAT  1080