BAC Information

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BAC

Clone NameB6Ng01-072C09
Chromosome16 (Build37)
Map Location 80,873,346 - 80,926,425
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik, LOC621365
Downstream geneLOC100039724, Ncam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072C09.bB6Ng01-072C09.g
ACCDH889643DH889644
length1,1491,142
definitionDH889643|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C09, 5' end.DH889644|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,873,346 - 80,874,509)(80,925,268 - 80,926,425)
sequence
gaattctaggacaggtttcattctacagctggccactggattatgaccac
cctgaaaatcgtcccacggcatgtatgtaagcacccctcgttctcttagt
accatctgtaatgagaaaactctcgtttctcagaacgacaatgttgatgt
ttggcagagttcaccaagggctcttgtctttggaggatcctgtatacgca
ttcaactcaatccatcaatattgcctgcagtaaaatagatgttacctgac
ttccagagaatatctgagggccattggaatgggaaaacaacacatctctt
ttaaagccctgtcctgtgaaccttaggtctcaaggtccctgcttcagtga
gggaaaaaaaaaaatagaaatgacaggcatgcaaacacacttagagaaaa
gctggggtcaagtgtgtcatgcacattctgacagaatgacatcagctacc
atgacctggaacttcagcatatttattaggtatggtccagcagggagagt
aagcttgcctggtaagaggtctccataggctatctgtctcaggcgatgag
cattcaggaaaagaaatctgttgttgctaagttttacttacttagctaac
atccacgctcataccaaaggaagactttgtcaaccctccaagcctgagcc
atatctggaaagcattgtctcttccataagtctgacgtttcgcatcctag
cacattatactctcttcttaaatgcattatatatatatatatatatatat
atatatatatatttagattataagaaaaattaaattttgttgtccttttc
cgctatccaaaccctcccatattactctttctgctctctttaaatttcat
gttctctattttactaattgctactgcgtgtgtatatgtatctctatgta
tatgtaaattacttcacataacttaacaaatccatgaaaattacttacat
atatattttttcactgttctttaaatttttactcaaggttttctcagcac
tcagatgttaactttttgcttgaagatgacagcagaaatacctctgatgt
ttcccatgttcttctgtagggtaaggaagcgtgcaattgtaacagatttg
tttcaaaggaggagctaactcaggaatggagctgaatggtgcaattcag
gaattccaaatttagtcccttagagccttacttgaataagaggtcttaaa
acctccctaatggatggcctaggattctgaaatgaggtgcttcaattcac
accatggatcctgttggtggatatttctggtcctgatgctgaactcatat
tgcctatctggcttgtaaaacggaagtccaagaaagctattttgtgtgcc
tctctttcctccttatgttagctgccattcagcagtgattagggaaaaca
tccaagcctaatgatgactcattacaggaaaacaatactggagtataaag
ggaaagcttcaaatgaggcagaagactttaagtcagtggctgatttagcc
actctagaaaagcaactgatttaatcaaacagaagctactccccaaccca
taacacctcttgcctctgaacacccgcccttcccctctatgaaccttcaa
tgtctacagaggaaaaagactctgaagttaagaccaagtcacctaaaaac
accaagattaactctctgataccttcagcgccatcatctactgcacgcac
cactcctacaccccagcaccccactcccaaacacacacacatacaccatg
gccattgagcagctctgtaatatcagagatgctgagaacaattatcccta
gccaccagagccataatggctcagggatccagaacctccacccatagggt
cttttctcattaatctacctgtatcaagacaatatcctctggcttgttat
cccctcacagtgagagacttgaaagtgttttgccagtttgttcacatgaa
tggaattcatgtcccatggaccaaatctttcaagaccattttttcagtag
caaactcttaactactcacgacaggtaagagatatgctgatctattcgat
ctagtcctctgtttgtacaaagggaagtcttatttagatacgaatgtcag
atgcaggctaaaaaagaatgtattacatattcacaaataggaccacatag
gacacaccatcccctactctattataatggactatgaccatctattatgc
cagctacttctaaccagagtcagcggcccttacccatgctgactgtttga
gcgtgactgcttaatgtaactcagttaggacctgcttagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80873346_80874509
seq2: B6Ng01-072C09.b_46_1194

seq1  GAATTCTAGGACAGGTTTCATTCTACAGCTGGCCACTGGATTATGACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACAGGTTTCATTCTACAGCTGGCCACTGGATTATGACCAC  50

seq1  CCTGAAAATCGTCCCACGGCATGTATGTAAGCACCCCTCGTTCTCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATCGTCCCACGGCATGTATGTAAGCACCCCTCGTTCTCTTAGT  100

seq1  ACCATCTGTAATGAGAAAACTCTCGTTTCTCAGAACGACAATGTTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTAATGAGAAAACTCTCGTTTCTCAGAACGACAATGTTGATGT  150

seq1  TTGGCAGAGTTCACCAAGGGCTCTTGTCTTTGGAGGATCCTGTATACGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGAGTTCACCAAGGGCTCTTGTCTTTGGAGGATCCTGTATACGCA  200

seq1  TTCAACTCAATCCATCAATATTGCCTGCAGTAAAATAGATGTTACCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCAATCCATCAATATTGCCTGCAGTAAAATAGATGTTACCTGAC  250

seq1  TTCCAGAGAATATCTGAGGGCCATTGGAATGGGAAAACAACACATCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGAATATCTGAGGGCCATTGGAATGGGAAAACAACACATCTCTT  300

seq1  TTAAAGCCCTGTCCTGTGAACCTTAGGTCTCAAGGTCCCTGCTTCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCCTGTCCTGTGAACCTTAGGTCTCAAGGTCCCTGCTTCAGTGA  350

seq1  GGGAAAAAAAAAAATAGAAATGACAGGCATGCAAACACACTTAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAAAAAATAGAAATGACAGGCATGCAAACACACTTAGAGAAAA  400

seq1  GCTGGGGTCAAGTGTGTCATGCACATTCTGACAGAATGACATCAGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTCAAGTGTGTCATGCACATTCTGACAGAATGACATCAGCTACC  450

seq1  ATGACCTGGAACTTCAGCATATTTATTAGGTATGGTCCAGCAGGGAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGGAACTTCAGCATATTTATTAGGTATGGTCCAGCAGGGAGAGT  500

seq1  AAGCTTGCCTGGTAAGAGGTCTCCATAGGCTATCTGTCTCAGGCGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCCTGGTAAGAGGTCTCCATAGGCTATCTGTCTCAGGCGATGAG  550

seq1  CATTCAGGAAAAGAAATCTGTTGTTGCTAAGTTTTACTTACTTAGCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGAAAAGAAATCTGTTGTTGCTAAGTTTTACTTACTTAGCTAAC  600

seq1  ATCCACGCTCATACCAAAGGAAGACTTTGTCAACCCTCCAAGCCTGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGCTCATACCAAAGGAAGACTTTGTCAACCCTCCAAGCCTGAGCC  650

seq1  ATATCTGGAAAGCATTGTCTCTTCCATAAGTCTGACGTTTCGCATCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGAAAGCATTGTCTCTTCCATAAGTCTGACGTTTCGCATCCTAG  700

seq1  CACATTATACTCTCTTCTTAAATGCATTATATATATATATATATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATACTCTCTTCTTAAATGCATTATATATATATATATATATATAT  750

seq1  ATATATATATATTTAGATTATAAGAAAAATTAAATTTTGTTGTCCTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTTAGATTATAAGAAAAATTAAATTTTGTTGTCCTTTTC  800

seq1  CGCTATCCAAACCCTCCCATATTACTCTTTCTGCTCTCTTTAAATTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATCCAAACCCTCCCATATTACTCTTTCTGCTCTCTTTAAATTTCAT  850

seq1  GTTCTCTATTTTACTAATTGCTACTGCGTGTGTATATGTATCTCTATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTATTTTACTAATTGCTACTGCGTGTGTATATGTATCTCTATGTA  900

seq1  TATGTAAATTACTTCACATAACTTAACAAATCCATGAAAAATTACTTACA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATGTAAATTACTTCACATAACTTAACAAATCCATG-AAAATTACTTACA  949

seq1  TATATATTTTTTCACTGTTCTTTAAATTTTTACTCAAGGTTTTCTCAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTTTCACTGTTCTTTAAATTTTTACTCAAGGTTTTCTCAGCA  999

seq1  CCTCAGATGTTAACTTTTTGCTTGAAAGATGAACAAGCAGAAATTACCCT  1050
       ||||||||||||||||||||||| |||||||   |||||||||   |||
seq2  -CTCAGATGTTAACTTTTTGCTTG-AAGATGA--CAGCAGAAAT--ACCT  1043

seq1  CTGATGTTTCCCATGTTCTTCTGTAGGGGTAAGGAAAGCAGTGCCAAATT  1100
      ||||||||||||||||||||||||| |||||||| |||| ||||  ||||
seq2  CTGATGTTTCCCATGTTCTTCTGTA-GGGTAAGG-AAGC-GTGC--AATT  1088

seq1  GTCAACAGATATG-TTCAAAGGAAGAGCTAACTCCAAAGGAAGTGGAGCT  1149
      || ||||||| || ||||||||| ||||||||||   ||||| |||||||
seq2  GT-AACAGATTTGTTTCAAAGGAGGAGCTAACTC---AGGAA-TGGAGCT  1133

seq1  GAAT-GTGCAATTCAG  1164
      |||| |||||||||||
seq2  GAATGGTGCAATTCAG  1149

seq1: chr16_80925268_80926425
seq2: B6Ng01-072C09.g_67_1208 (reverse)

seq1  TGGCTAAGCA-GTCCTATACCTTGAGTATACA-TAAGCAGTCA-GCTCAA  47
      |||||||||| |||||| ||  ||||| |||| |||||||||| |||| |
seq2  TGGCTAAGCAGGTCCTA-AC--TGAGT-TACATTAAGCAGTCACGCTC-A  45

seq1  AACAGTCAGCATGGGGTAAGGGCCGCTGAACTCCTGTGTAGAAGGTAGCC  97
      |||||||||||| ||||||||||||||| ||| |||  ||||| |||| |
seq2  AACAGTCAGCAT-GGGTAAGGGCCGCTG-ACT-CTGGTTAGAA-GTAG-C  90

seq1  TGGCATAATAGATGGTCATAGTTCCAATTTATAAATAGAGTAGGGGATGG  147
      ||||||||||||||||||||| ||||  |||| |||||||||||||||||
seq2  TGGCATAATAGATGGTCATAG-TCCA--TTAT-AATAGAGTAGGGGATGG  136

seq1  TGTTGTCCTTATTGTGGTCCTATTTGTTGAATATGTAATACATTCTTTTT  197
      || ||||||   |||||||||||||| |||||||||||||||||| ||||
seq2  TG-TGTCCT--ATGTGGTCCTATTTG-TGAATATGTAATACATTC-TTTT  181

seq1  TTAGCCTGCATCTGACATTCGTATCTAAATAAGACTTCCCTTTGTACAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTGCATCTGACATTCGTATCTAAATAAGACTTCCCTTTGTACAAA  231

seq1  CAGAGGACTAGATCGAATAGATCAGCATATCTCTTACCTGTCGTGAGTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACTAGATCGAATAGATCAGCATATCTCTTACCTGTCGTGAGTAG  281

seq1  TTAAGAGTTTGCTACTGAAAAAATGGTCTTGAAAGATTTGGTCCATGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTTTGCTACTGAAAAAATGGTCTTGAAAGATTTGGTCCATGGGA  331

seq1  CATGAATTCCATTCATGTGAACAAACTGGCAAAACACTTTCAAGTCTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTCCATTCATGTGAACAAACTGGCAAAACACTTTCAAGTCTCTC  381

seq1  ACTGTGAGGGGATAACAAGCCAGAGGATATTGTCTTGATACAGGTAGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGGGGATAACAAGCCAGAGGATATTGTCTTGATACAGGTAGATT  431

seq1  AATGAGAAAAGACCCTATGGGTGGAGGTTCTGGATCCCTGAGCCATTATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAAGACCCTATGGGTGGAGGTTCTGGATCCCTGAGCCATTATG  481

seq1  GCTCTGGTGGCTAGGGATAATTGTTCTCAGCATCTCTGATATTACAGAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTGGCTAGGGATAATTGTTCTCAGCATCTCTGATATTACAGAGC  531

seq1  TGCTCAATGGCCATGGTGTATGTGTGTGTGTTTGGGAGTGGGGTGCTGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATGGCCATGGTGTATGTGTGTGTGTTTGGGAGTGGGGTGCTGGG  581

seq1  GTGTAGGAGTGGTGCGTGCAGTAGATGATGGCGCTGAAGGTATCAGAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGAGTGGTGCGTGCAGTAGATGATGGCGCTGAAGGTATCAGAGAG  631

seq1  TTAATCTTGGTGTTTTTAGGTGACTTGGTCTTAACTTCAGAGTCTTTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTGGTGTTTTTAGGTGACTTGGTCTTAACTTCAGAGTCTTTTTC  681

seq1  CTCTGTAGACATTGAAGGTTCATAGAGGGGAAGGGCGGGTGTTCAGAGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACATTGAAGGTTCATAGAGGGGAAGGGCGGGTGTTCAGAGGC  731

seq1  AAGAGGTGTTATGGGTTGGGGAGTAGCTTCTGTTTGATTAAATCAGTTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTGTTATGGGTTGGGGAGTAGCTTCTGTTTGATTAAATCAGTTGC  781

seq1  TTTTCTAGAGTGGCTAAATCAGCCACTGACTTAAAGTCTTCTGCCTCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAGTGGCTAAATCAGCCACTGACTTAAAGTCTTCTGCCTCATT  831

seq1  TGAAGCTTTCCCTTTATACTCCAGTATTGTTTTCCTGTAATGAGTCATCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTTCCCTTTATACTCCAGTATTGTTTTCCTGTAATGAGTCATCA  881

seq1  TTAGGCTTGGATGTTTTCCCTAATCACTGCTGAATGGCAGCTAACATAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTGGATGTTTTCCCTAATCACTGCTGAATGGCAGCTAACATAAG  931

seq1  GAGGAAAGAGAGGCACACAAAATAGCTTTCTTGGACTTCCGTTTTACAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGAGAGGCACACAAAATAGCTTTCTTGGACTTCCGTTTTACAAG  981

seq1  CCAGATAGGCAATATGAGTTCAGCATCAGGACCAGAAATATCCACCAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGGCAATATGAGTTCAGCATCAGGACCAGAAATATCCACCAACA  1031

seq1  GGATCCATGGTGTGAATTGAAGCACCTCATTTCAGAATCCTAGGCCATCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATGGTGTGAATTGAAGCACCTCATTTCAGAATCCTAGGCCATCC  1081

seq1  ATTAGGGAGGTTTTAAGACCTCTTATTCAAGTAAGGCTCTAAGGGACTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGAGGTTTTAAGACCTCTTATTCAAGTAAGGCTCTAAGGGACTAA  1131

seq1  ATTTGGAATTC  1158
      |||||||||||
seq2  ATTTGGAATTC  1142