BAC Information

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BAC

Clone NameB6Ng01-072J07
Chromosome16 (Build37)
Map Location 45,417,376 - 45,548,643
singlet/doubletdoublet
Overlap geneGm609, LOC628681, Slc9a10
Upstream geneWdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905
Downstream geneGcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072J07.bB6Ng01-072J07.g
ACCDH889960DH889961
length1,1281,094
definitionDH889960|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J07, 5' end.DH889961|Mus musculus domesticus DNA, BAC clone: B6Ng01-072J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,547,499 - 45,548,643)(45,417,376 - 45,417,968)
sequence
gaattctgtgaatggccctgtatgcacttgagttctgaacatgcagctta
gtccagcaccgtctaccactggaaaaggagacaatgggggctggagagat
ggctcagcagttaagagcactgactttcttctagaggacctgtgttccat
tcccaacacctacatggaagctcacaactgtttgtaaccctagttctagg
ggacctgatacccttacacatacatgcatgcagggaaaacaccaacatac
ataaaatgaaaataagtaaattatatataaaaagaggaagttatggtttg
tgacacatgaaggaatggaaacagtcttcataacataaactgctccagct
cattgggtctgaggccctctatagctttatcctagtgtaggatgaggtgg
tttgagtgagaatggcccctagtaggttcaaacttttgaatgtttactca
ctaatgagctaccatgacctgagtatacagtcattgggtaatggtcaaat
gccaatataatgaaaggcaagtactgccttatcttctaagctattttgct
tatttggggtttttttttttttggttggggtacacaaaagaaaacaaaac
aacagcagcagtaacaacaaaatcccatcatctcattgtttggacacaaa
tgatcctctgggaagcttcaccccagcccacagtgagaaagcatgctatg
tgcaggtcaagtcagcctgccaatacttgctacttcctgtaagcataatt
tataataagacacaacattcatgagcactttaagatgttagagaaaaacc
cttacctagggtgtggttcacactctttgacttgaatctgatatgcacaa
caccactatatataactaaagataacactgaggtcagtagactctctcct
taaattaaatttgtgaggcttctagaaagacctaaacatgtcgaggaaga
taaagctgcgtcatattaaagaataaaactgtattagcatgcattcataa
ccatgggttctcatctgctcccactcttctttcaggtccctaccttttgt
ggagttctcagtctagcagtttctcctaaggacgcacatttatgatgcta
gatcattctgactatctagctatggatt
gaattcaataaaaattacttgatttattggcaataaacttaaatagacat
atctgaaggaaggcatacaaaatggcatttaatgggacatgaaaaatgct
taatatcattagtcatcatggaaatgcaaatcaagccaccagaaggtagc
agcttaccacacaggagtatttattatttaaggcaccaaagaaaactgat
gtatgcacatggagaagggaatcctcacatagtgtaggtgaaatataaat
taatatgccattactgaaaacaccatgaaggattctcgaaaagttaaaaa
tcaaactgctatataatcaggctattccattattggatatatattgaaaa
ggaaaagaaatcaatatgttgaaaatgttgagaagatatctggacttcca
cagtttttttgtaacactattcacaacagatgaagactaaagcaactacc
tgtctagaactaatgagcagagtaagaaaacataatacacacagcggtgt
aaatattatttggccataaatggaaattctgtcatttgcaacaatgtgga
tggaactcggggttcatccatacaaagccccccccaaaaaaaatccagtt
acttaaagacaagtgataagtgatttgatcaagataaggaatacacaatt
cacgtcacagagttgagagtagaatggtattgtttagagactgggttagt
agagggtaggagagatgaggaaaaagtggtcaaaactaagtttatagtta
gaagtgagactttcttgagctactgcacaggagggtaattatagataatg
actgtgtgctgcatatttttaaaaccttacaggaaagatttgaaaagttt
taggcacaaagaaatgataaatgtctgagtaaacagatacctttaacttg
ctatcaaaatatacatgatactcataatatctataattattatgtatcag
ttaatctaatttttaacttccaaaatgttaagacattacattaataaaaa
cctcccttaaacaaattcttgtctcccactatttctacaagataatgctg
gctaggatacatttcaaaatttgaagcttcttaattaaatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45547499_45548643
seq2: B6Ng01-072J07.b_41_1168 (reverse)

seq1  AATCCATAGCTAAGAATAGGTCCAGAATTAGATTCTCTGCATCATAAAAA  50
      ||||||||||||   ||||   |||||| |   |||  |||||||  |||
seq2  AATCCATAGCTA--GATAG--TCAGAATGA---TCT-AGCATCAT--AAA  40

seq1  TGTGTGTCCTTTGGGAAGAAAACTGCTAGACTGAAGAAATCCACAAAAGG  100
      |||| |||||| ||  || |||||||||||||| |||| |||||||||||
seq2  TGTGCGTCCTTAGG--AG-AAACTGCTAGACTG-AGAACTCCACAAAAGG  86

seq1  TAGGGACCTGGAAGAAGAGTGTGGAGCAGATGAGAACCCATGGTTAATGA  150
      |||||||||| |||||||||| ||||||||||||||||||||||| ||||
seq2  TAGGGACCTGAAAGAAGAGTG-GGAGCAGATGAGAACCCATGGTT-ATGA  134

seq1  ATGCATGCTAATACAGTTTTATTCTTTAATATTGACGCAGCTTTATCTTC  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCATGCTAATACAGTTTTATTCTTTAATA-TGACGCAGCTTTATCTTC  183

seq1  CTCGACATGTTTAGGTCTTTCTAGAAGCCTCACAAATTTAATTAATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  CTCGACATGTTTAGGTCTTTCTAGAAGCCTCACAAATTTAATTTAAGGAG  233

seq1  AGAGTCTACTGACCTCAGTGTTATCCTTAGTTATATATAGTGGTGTTGTG  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAGTCTACTGACCTCAGTGTTATCTTTAGTTATATATAGTGGTGTTGTG  283

seq1  CATATCAGATTCAAGTCAAAGAGTGTGAACCACACCCTAGGTAAGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGATTCAAGTCAAAGAGTGTGAACCACACCCTAGGTAAGGGTTT  333

seq1  TTCTCTAACATCTTAAAGTGCTCATGAATGTTGTGTCTTATTATAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAACATCTTAAAGTGCTCATGAATGTTGTGTCTTATTATAAATTA  383

seq1  TGCTTACAGGAAGTAGCAAGTATTGGCAGGCTGACTTGACCTGCACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAGGAAGTAGCAAGTATTGGCAGGCTGACTTGACCTGCACATAG  433

seq1  CATGCTTTCTCACTGTGGGCTGGGGTGAAGCTTCCCAGAGGATCATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTCTCACTGTGGGCTGGGGTGAAGCTTCCCAGAGGATCATTTGT  483

seq1  GTCCAAACAATGAGATGATGGGATTTTGTTGTTACTGCTGCTGTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACAATGAGATGATGGGATTTTGTTGTTACTGCTGCTGTTGTTTT  533

seq1  GTTTTCTTTTGTGTACCCCAACCAAAAAAAAAAAAACCCCAAATAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTTGTGTACCCCAACCAAAAAAAAAAAAACCCCAAATAAGCAA  583

seq1  AATAGCTTAGAAGATAAGGCAGTACTTGCCTTTCATTATATTGGCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTAGAAGATAAGGCAGTACTTGCCTTTCATTATATTGGCATTTG  633

seq1  ACCATTACCCAATGACTGTATACTCAGGTCATGGTAGCTCATTAGTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACCCAATGACTGTATACTCAGGTCATGGTAGCTCATTAGTGAGT  683

seq1  AAACATTCAAAAGTTTGAACCTACTAGGGGCCATTCTCACTCAAACCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCAAAAGTTTGAACCTACTAGGGGCCATTCTCACTCAAACCACC  733

seq1  TCATCCTACACTAGGATAAAGCTATAGAGGGCCTCAGACCCAATGAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTACACTAGGATAAAGCTATAGAGGGCCTCAGACCCAATGAGCTG  783

seq1  GAGCAGTTTATGTTATGAAGACTGTTTCCATTCCTTCATGTGTCACAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTTATGTTATGAAGACTGTTTCCATTCCTTCATGTGTCACAAAC  833

seq1  CATAACTTCCTCTTTTTATATATAATTTACTTATTTTCATTTTATGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTCCTCTTTTTATATATAATTTACTTATTTTCATTTTATGTATG  883

seq1  TTGGTGTTTTCCCTGCATGCATGTATGTGTAAGGGTATCAGGTCCCCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTTCCCTGCATGCATGTATGTGTAAGGGTATCAGGTCCCCTAG  933

seq1  AACTAGGGTTACAAACAGTTGTGAGCTTCCATGTAGGTGTTGGGAATGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGGTTACAAACAGTTGTGAGCTTCCATGTAGGTGTTGGGAATGGA  983

seq1  ACACAGGTCCTCTAGAAGAAAGTCAGTGCTCTTAACTGCTGAGCCATCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTCCTCTAGAAGAAAGTCAGTGCTCTTAACTGCTGAGCCATCTC  1033

seq1  TCCAGCCCCCATTGTCTCCTTTTCCAGTGGTAGACGGTGCTGGACTAAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCCATTGTCTCCTTTTCCAGTGGTAGACGGTGCTGGACTAAGC  1083

seq1  TGCATGTTCAGAACTCAAGTGCATACAGGGCCATTCACAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTCAGAACTCAAGTGCATACAGGGCCATTCACAGAATTC  1128

seq1: chr16_45417376_45417968
seq2: B6Ng01-072J07.g_576_1158

seq1  GGCCATAAATGGAAATTCTGTCATTTGCAACAATGTGGATGGAACTCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAATGGAAATTCTGTCATTTGCAACAATGTGGATGGAACTCGGG  50

seq1  GTTCATCCATACAAAGCCCCCCCCAAAAAAAATCCAGTTACTTAAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCATACAAAGCCCCCCCCAAAAAAAATCCAGTTACTTAAAGACA  100

seq1  AGTGATAAGTGATTTGATCAAGATAAGGAATACACAATTCACGTCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAGTGATTTGATCAAGATAAGGAATACACAATTCACGTCACAGA  150

seq1  GTTGAGAGTAGAATGGTATTGTTTAGAGACTGGGTTAGTAGAGGGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGTAGAATGGTATTGTTTAGAGACTGGGTTAGTAGAGGGTAGGA  200

seq1  GAGATGAGGAAAAAGTGGTCAAAACTAAGTTTATAGTTAGAAGTGAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGAAAAAGTGGTCAAAACTAAGTTTATAGTTAGAAGTGAGACT  250

seq1  TTCTTGAGCTACTGCACAGGAGGGTAATTATAGATAATGACTGTGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGCTACTGCACAGGAGGGTAATTATAGATAATGACTGTGTGCTG  300

seq1  CATATTTTTAAAACCTTACAGGAAAGATTTGAAAAGTTTTAGGCACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTAAAACCTTACAGGAAAGATTTGAAAAGTTTTAGGCACAAAG  350

seq1  AAATGATAAATGTCTGAGTAAACAGATACCTTTAACTTGCTATCAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAAATGTCTGAGTAAACAGATACCTTTAACTTGCTATCAAAATA  400

seq1  TACATGATACTCCATAAATATCTATAATTATTATGTATCAGTTAAATCTA  450
      ||||||||||| ||| ||||||||||||||||||||||||||| ||||||
seq2  TACATGATACT-CAT-AATATCTATAATTATTATGTATCAGTT-AATCTA  447

seq1  A-TTTTAACTT-CAAAATGTAAAGACATTAACATAAAT-AAAACCTCACT  497
      | ||||||||| |||||||| |||||||| |||| ||| |||||||| ||
seq2  ATTTTTAACTTCCAAAATGTTAAGACATT-ACATTAATAAAAACCTCCCT  496

seq1  TGAAACAAATTCTTGTCTCCACTTATTTCTAACATGATAATTGCT-GCTA  546
      | ||||||||||||||||||   ||||||| ||| ||||| |||| ||||
seq2  T-AAACAAATTCTTGTCTCCCACTATTTCT-ACAAGATAA-TGCTGGCTA  543

seq1  GTGAATACATTTTCAAAAATTTGAAACATTCTTAAATTTAAAAATAT  593
        | ||||||||   |||||||||| | |||||||  ||||| ||||
seq2  --GGATACATTT--CAAAATTTGAAGC-TTCTTAA--TTAAATATAT  583