BAC Information

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BAC

Clone NameB6Ng01-077C17
Chromosome16 (Build37)
Map Location 39,751,325 - 39,863,170
singlet/doubletdoublet
Overlap genenone
Upstream geneB4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077C17.bB6Ng01-077C17.g
ACCDH893217DH893218
length1,083856
definitionDH893217|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C17, 5' end.DH893218|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,751,325 - 39,752,433)(39,862,315 - 39,863,170)
sequence
gaattctctatgaaggaaccattgcagatttttttttccatttggtaatc
cttatttagactggaaaattaaaaataaaacagcattaataaagctaagt
catttcttattaatgcatgcaggtttatatgcaatttaaaagatctgatg
gtagattaactttggggatttgcttgaatctttaaggtgctctttattat
taaatggagtttctcttgcttatctaaggatgggcttcagtttgctttca
aatctgaaaatatgaaaggatcataaacgtacattgagtcagtgctacca
aattccaccagagctagtcttaagagtactttaggaagatgtatattgat
ttttcagaacacaaagatcttccctgagcagctcttcccggctccattat
tggcaggacagtttctacggaaggattctctgacatattatttctgcact
gacatacttacagatggttccactgtagctgaactgctgaggtctctctc
agcttaatcaagaatgcttattttacacttttaaaagcatatcaaatgtg
aagcaataataattaagcctcttatttttatgaagccttcagagatctgt
gaaaaaaggcaacatgtagtactttgtaaatgtcaaatctctttacagaa
atgcgaaggaggtatttcaggctgtcatctgttcttcatgctgcctactg
accctcattgggagctaccgattctagaagattctgtgcccactgaaata
aatagctcactcaggcacaaagcaagatgttggacaacatacaggacagc
agcacccactttaattctaccatgcagtgtgtttcataaagaaatgggac
tagaagcttagacattaaagaacagttgcagttggcagcaagaaagtgaa
tgctttagttccactgtgacaatgacagatttggaacaagaagctgtgtt
tcagcatgtaaaacagaaaaggatatacttttttttttttttactatcct
caagaagaatattaacatgaaattaaagtaggttgttccaatgccagtaa
ttgaggatgtaagatgagctggaatagatgttt
gaattcagtttctctgagaaagacaacaagacataaacatacatattgca
aaggttaaaaacgtatcagcatcaaaataataggtactagacttcacaga
ctgttaaaattaattaaaagtgccagtatagtaactgtgtgtgaacaccc
ccacccagaagttgaatgaacttagactaacaattatgtgcagcaaagta
agttattcagatactcatttgtcttctgagtgcatatgctacttttgtaa
cttgtatgtctgtttcaaggagatggccagattctcataccctcctaaca
gggagatgataatagtgcttgagattggtacaacctgttccgtgtttaat
cctaattaagattataaataatccgatgccattggagaaaaacaagttct
cagagacaaagatgaaagaatagcacctagaatgaaggtacactaaagga
ggatggcttctagatgcgacaaatattcttcttcccaaccggagcacaga
agcaacagagcactgtctgtacttgtctgctgcttagctgtctcttgtga
gactaggcaggggcctagcaaacacagaagtgaatgctcacagtaagcta
ttgggtgaatcaaagggcccccaatggaggagctagagaaagtacccaag
gagctaaagggatctgcaaccctataggtggaacaacattatgaactaac
cagtaccccggagctcttgactctagctgatatgtatcaaaagatggcct
agtcggccatcactggaaagagaggccctttggacttgcaaactttatat
gccccagtacaggggaacgccagggccaaaaagggggagtgggtgggtag
gggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_39751325_39752433
seq2: B6Ng01-077C17.b_45_1127

seq1  GAATTCTCTATGAAGGAACCATTGCAGATTTTTTTTTCCATTTGGTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGAAGGAACCATTGCAGATTTTTTTTTCCATTTGGTAATC  50

seq1  CTTATTTAGACTGGAAAATTAAAAATAAAACAGCATTAATAAAGCTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAGACTGGAAAATTAAAAATAAAACAGCATTAATAAAGCTAAGT  100

seq1  CATTTCTTATTAATGCATGCAGGTTTATATGCAATTTAAAAGATCTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTATTAATGCATGCAGGTTTATATGCAATTTAAAAGATCTGATG  150

seq1  GTAGATTAACTTTGGGGATTTGCTTGAATCTTTAAGGTGCTCTTTATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTAACTTTGGGGATTTGCTTGAATCTTTAAGGTGCTCTTTATTAT  200

seq1  TAAATGGAGTTTCTCTTGCTTATCTAAGGATGGGCTTCAGTTTGCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGTTTCTCTTGCTTATCTAAGGATGGGCTTCAGTTTGCTTTCA  250

seq1  AATCTGAAAATATGAAAGGATCATAAACGTACATTGAGTCAGTGCTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAATATGAAAGGATCATAAACGTACATTGAGTCAGTGCTACCA  300

seq1  AATTCCACCAGAGCTAGTCTTAAGAGTACTTTAGGAAGATGTATATTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACCAGAGCTAGTCTTAAGAGTACTTTAGGAAGATGTATATTGAT  350

seq1  TTTTCAGAACACAAAGATCTTCCCTGAGCAGCTCTTCCCGGCTCCATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAACACAAAGATCTTCCCTGAGCAGCTCTTCCCGGCTCCATTAT  400

seq1  TGGCAGGACAGTTTCTACGGAAGGATTCTCTGACATATTATTTCTGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGACAGTTTCTACGGAAGGATTCTCTGACATATTATTTCTGCACT  450

seq1  GACATACTTACAGATGGTTCCACTGTAGCTGAACTGCTGAGGTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACTTACAGATGGTTCCACTGTAGCTGAACTGCTGAGGTCTCTCTC  500

seq1  AGCTTAATCAAGAATGCTTATTTTACACTTTTAAAAGCATATCAAATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATCAAGAATGCTTATTTTACACTTTTAAAAGCATATCAAATGTG  550

seq1  AAGCAATAATAATTAAGCCTCTTATTTTTATGAAGCCTTCAGAGATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAATAATTAAGCCTCTTATTTTTATGAAGCCTTCAGAGATCTGT  600

seq1  GAAAAAAGGCAACATGTAGTACTTTGTAAATGTCAAATCTCTTTACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGCAACATGTAGTACTTTGTAAATGTCAAATCTCTTTACAGAA  650

seq1  ATGCGAAGGAGGTATTTCAGGCTGTCATCTGTTCTTCATGCTGCCTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAAGGAGGTATTTCAGGCTGTCATCTGTTCTTCATGCTGCCTACTG  700

seq1  ACCCTCATTGGGAGCTACCGATTCTAGAAGATTCTGTGCCCACTGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCATTGGGAGCTACCGATTCTAGAAGATTCTGTGCCCACTGAAATA  750

seq1  AATAGCTCACTCAGGCACAAAGCAAGATGTTGGACAACATACAGGACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCACTCAGGCACAAAGCAAGATGTTGGACAACATACAGGACAGC  800

seq1  AGCACCCACTTTAATTCTACCATGCAGTGTGTTTCATAAAGAAATGGGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCACCCACTTTAATTCTACCATGCAGTGTGTTTCATAAAGAAATGGG-A  849

seq1  CTAGAAGCTTAGACATTAAAGAACAGTTGCAGTTGGCAGGCAAGGAAGGT  900
      |||||||||||||||||||||||||||||||||||||| |||| ||| ||
seq2  CTAGAAGCTTAGACATTAAAGAACAGTTGCAGTTGGCA-GCAA-GAAAGT  897

seq1  GAATGCCTTTAGTTCCACTGTGACAAATGACAAGATTTGGAACAAGGAAG  950
      ||||| |||||||||||||||||| |||||| ||||||||||||| ||||
seq2  GAATG-CTTTAGTTCCACTGTGAC-AATGAC-AGATTTGGAACAA-GAAG  943

seq1  CTGTGTTTCAGGCATGTAAAAACAGAAAAAGGATAATACTTTTTTTTTTT  1000
      |||||||||| |||||| ||||||| |||||||| |||| ||||||||||
seq2  CTGTGTTTCA-GCATGT-AAAACAG-AAAAGGAT-ATAC-TTTTTTTTTT  988

seq1  TTTTACTATCCTCAAGAAGGAATATTTAACATGAAAATTAAAAGTAGGGT  1050
      |||||||||||||||||| ||||| |||||||||||  | |||||| |||
seq2  TTTTACTATCCTCAAGAA-GAATA-TTAACATGAAA--TTAAAGTA-GGT  1033

seq1  TGTCCCAATGCCAAGTAAATTTGAGGAGTGTAAAGAATGAAGCTGGAATT  1100
      ||| |||||||| |||||  ||||||| |||||   ||| |||||||| |
seq2  TGTTCCAATGCC-AGTAA--TTGAGGA-TGTAA--GATG-AGCTGGAA-T  1075

seq1  AGAATGTTT  1109
      || ||||||
seq2  AG-ATGTTT  1083

seq1: chr16_39862315_39863170
seq2: B6Ng01-077C17.g_69_924 (reverse)

seq1  ACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC  50

seq1  TGGGGCATATAAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGTGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATATAAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGTGATGG  100

seq1  CCGACTAGGCCATCTTTTGATACATATCAGCTAGAGTCAAGAGCTCCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTAGGCCATCTTTTGATACATATCAGCTAGAGTCAAGAGCTCCGGG  150

seq1  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  200

seq1  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTTTGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTTTGATTC  250

seq1  ACCCAATAGCTTACTGTGAGCATTCACTTCTGTGTTTGCTAGGCCCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATAGCTTACTGTGAGCATTCACTTCTGTGTTTGCTAGGCCCCTGC  300

seq1  CTAGTCTCACAAGAGACAGCTAAGCAGCAGACAAGTACAGACAGTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCACAAGAGACAGCTAAGCAGCAGACAAGTACAGACAGTGCTCT  350

seq1  GTTGCTTCTGTGCTCCGGTTGGGAAGAAGAATATTTGTCGCATCTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCTGTGCTCCGGTTGGGAAGAAGAATATTTGTCGCATCTAGAAG  400

seq1  CCATCCTCCTTTAGTGTACCTTCATTCTAGGTGCTATTCTTTCATCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCTTTAGTGTACCTTCATTCTAGGTGCTATTCTTTCATCTTTG  450

seq1  TCTCTGAGAACTTGTTTTTCTCCAATGGCATCGGATTATTTATAATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGAACTTGTTTTTCTCCAATGGCATCGGATTATTTATAATCTTA  500

seq1  ATTAGGATTAAACACGGAACAGGTTGTACCAATCTCAAGCACTATTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATTAAACACGGAACAGGTTGTACCAATCTCAAGCACTATTATCA  550

seq1  TCTCCCTGTTAGGAGGGTATGAGAATCTGGCCATCTCCTTGAAACAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTTAGGAGGGTATGAGAATCTGGCCATCTCCTTGAAACAGACA  600

seq1  TACAAGTTACAAAAGTAGCATATGCACTCAGAAGACAAATGAGTATCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTACAAAAGTAGCATATGCACTCAGAAGACAAATGAGTATCTGA  650

seq1  ATAACTTACTTTGCTGCACATAATTGTTAGTCTAAGTTCATTCAACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTACTTTGCTGCACATAATTGTTAGTCTAAGTTCATTCAACTTCT  700

seq1  GGGTGGGGGTGTTCACACACAGTTACTATACTGGCACTTTTAATTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTGTTCACACACAGTTACTATACTGGCACTTTTAATTAATTT  750

seq1  TAACAGTCTGTGAAGTCTAGTACCTATTATTTTGATGCTGATACGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTCTGTGAAGTCTAGTACCTATTATTTTGATGCTGATACGTTTTT  800

seq1  AACCTTTGCAATATGTATGTTTATGTCTTGTTGTCTTTCTCAGAGAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGCAATATGTATGTTTATGTCTTGTTGTCTTTCTCAGAGAAACT  850

seq1  GAATTC  856
      ||||||
seq2  GAATTC  856