BAC Information

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BAC

Clone NameB6Ng01-078J06
Chromosome16 (Build37)
Map Location 53,432,245 - 53,528,151
singlet/doubletdoublet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078J06.bB6Ng01-078J06.g
ACCDH894235DH894236
length1,1151,056
definitionDH894235|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J06, 5' end.DH894236|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,432,245 - 53,433,374)(53,527,608 - 53,528,151)
sequence
gaattcttgaatactatatactgagaagtcaaaccaataacaactcttct
gtgagtgaagcaaccccaatagagggaagaggaggatgtggtctgagact
taagactgtcacttcggctatggtcagaaaaaacaagaaaaagagcaggg
cagaatcagcctattaaaatgcctctttcttgtaaccacccttgcctcaa
tgactcatgaccaagagaggagcaatcaaagtgagagtactaagacagac
tatccctatgtattattgcctttgtatttgccttttatattattttttgt
ttcagtgaaatccatgtaagtgttcatttgggtcacttgcagagttttcg
cttagggatattgtctaattttgcacagtgggctgctgatatgtggacct
ttgcatcctttaaagatgaagcacagtgatgagcaaacaatcatggggat
atgtttgagtttagagatattatagttttcaagaatataagagtgtagag
ttgaagaagaagaagaaaaaaaaggaaggagaaaacatacaagggttttg
cctttagtaactggagacgtacaggtgatataaaataagcaaacattcag
acaaacaaacaaacaaggtatttgtatactcaaggttgcttagcacagca
aaaccttcagttagtttgaacatctgatttggatagttctattaactaat
aaggttaatatttttttttattttttattttaattaggtattttctttgt
ttacatttccaatgctatcacaaaagccccccataccctccccccctccc
ctacccacccactcccacttcttggccctggcattctctgtactgaggca
tataaagtttgcaagaccaatgggcctctctttccactgatggccgacta
ggccatcttctgatacatatgcagctagagacacagctccggggggtact
ggataagttcatatattgttccacctctatggttgcagacctctttagct
ccttgagtacttctctagctctcttcattggggcgtactcactgaaaagt
ggatatagcccgaacttagatacccagattagatcattgcaaacaatgaa
cttcaagaagaacaa
gaattctttgtttagctctgtaccccatttttaatagggttatttggttt
tctggagtctaactttggaatacctaaggaacaattcacaaaacacgtgc
aacagaagaaggaagaccaaagtgtggattctttggtcctccttagagga
gggaataaaatacccatggaaggagttacagagagaaagtgtgaagcaga
gactgaaggaatgaccacccagagacttccccacctggggattcatccca
tagacaaacaccaaagccagacactatgagggataacaataagagcttgc
tgacaggcacctgatatagctgtctcctgagaggctctgccagtgcctgt
caaatacagaagtccatgttcacagccatccattggacagagcacagggt
ccccaatgaaggagctagagaaagtacccagagaggtgaagggtttgtag
caccataggaggaacaacaatgtgaattaaacagtatctccatagctccc
tgggactaaacctccaaccaaagaaaacacatggttggactcatggccct
agtagaggatggcctagtcggtcatcaatgagaggagaggcccttggtcc
tgtgatggttctatgccccaggataggagaatgtcagggtcaggaagcaa
gagtaggtgagttggtgagcagtcggagggggaaaaggatagggggtttt
cagaggggaaactagggaaaggggattacattaaaaatgtaaataaaata
tctaataaaaaagaaaaataaaaaagatttttaaaacaaaaaagaagaaa
ggatgctgaacaccagtatccatcaagacataactctctctgcttcagtc
ttagcttactcacagctctactgtcacaggctaccaggcactaacgacca
gcatgtttattgaaggtgagcattatccatctacatgtcattcctgattt
aaattctaatcagtttgtccataaattgactcccttattcactaggaata
tttttgatggacatgctcataaagctattcctcccatgtgcattctttaa
gtgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53432245_53433374
seq2: B6Ng01-078J06.b_46_1160

seq1  GAATTCTTGAATACTATATACTGAGAAGTCAAACCAATAACAACTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATACTATATACTGAGAAGTCAAACCAATAACAACTCTTCT  50

seq1  GTGAGTGAAGCAACCCCAATAGAGGGAAGAGGAGGATGTGGTCTGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAAGCAACCCCAATAGAGGGAAGAGGAGGATGTGGTCTGAGACT  100

seq1  TAAGACTGTCACTTCGGCTATGGTCAGAAAAAACAAGAAAAAGAGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGTCACTTCGGCTATGGTCAGAAAAAACAAGAAAAAGAGCAGGG  150

seq1  CAGAATCAGCCTATTAAAATGCCTCTTTCTTGTAACCACCCTTGCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGCCTATTAAAATGCCTCTTTCTTGTAACCACCCTTGCCTCAA  200

seq1  TGACTCATGACCAAGAGAGGAGCAATCAAAGTGAGAGTACTAAGACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATGACCAAGAGAGGAGCAATCAAAGTGAGAGTACTAAGACAGAC  250

seq1  TATCCCTATGTATTATTGCCTTTGTATTTGCCTTTTATATTATTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTATGTATTATTGCCTTTGTATTTGCCTTTTATATTATTTTTTGT  300

seq1  TTCAGTGAAATCCATGTAAGTGTTCATTTGGGTCACTTGCAGAGTTTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAAATCCATGTAAGTGTTCATTTGGGTCACTTGCAGAGTTTTCG  350

seq1  CTTAGGGATATTGTCTAATTTTGCACAGTGGGCTGCTGATATGTGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGATATTGTCTAATTTTGCACAGTGGGCTGCTGATATGTGGACCT  400

seq1  TTGCATCCTTTAAAGATGAAGCACAGTGATGAGCAAACAATCATGGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCTTTAAAGATGAAGCACAGTGATGAGCAAACAATCATGGGGAT  450

seq1  ATGTTTGAGTTTAGAGATATTATAGTTTTCAAGAATATAAGAGTGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAGTTTAGAGATATTATAGTTTTCAAGAATATAAGAGTGTAGAG  500

seq1  TTGAAGAAGAAGAAGAAAAAAAAGGAAGGAGAAAACATACAAGGGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGAAGAAGAAAAAAAAGGAAGGAGAAAACATACAAGGGTTTTG  550

seq1  CCTTTAGTAACTGGAGACGTACAGGTGATATAAAATAAGCAAACATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTAACTGGAGACGTACAGGTGATATAAAATAAGCAAACATTCAG  600

seq1  ACAAACAAACAAACAAGGTATTTGTATACTCAAGGTTGCTTAGCACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAGGTATTTGTATACTCAAGGTTGCTTAGCACAGCA  650

seq1  AAACCTTCAGTTAGTTTGAACATCTGATTTGGATAGTTCTATTAACTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCAGTTAGTTTGAACATCTGATTTGGATAGTTCTATTAACTAAT  700

seq1  AAGGTTAATATTTTTTTTTATTTTTTATTTTAATTAGGTATTTTCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAATATTTTTTTTTATTTTTTATTTTAATTAGGTATTTTCTTTGT  750

seq1  TTACATTTCCAATGCTATCACAAAAGCCCCCCATACCCTCCCCCCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCAATGCTATCACAAAAGCCCCCCATACCCTCCCCCCCTCCC  800

seq1  CTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCTCTGTACTGAGGC  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTACCCACCCACTCCCACTTCTTGGCCCTGGCATT-CTCTGTACTGAGGC  849

seq1  ATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCGACT  899

seq1  AGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCCGGGGGGTA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGCCATCTTCTGATACATATGCAGCTAGAGACAC-AGCTCCGGGGGGTA  948

seq1  CTGG-TTAGTTCATATTATTGTTCCACCTCTATGGTTGCAGACCCCTTTA  999
      |||| | |||||||| |||||||||||||||||||||||||||| |||||
seq2  CTGGATAAGTTCATA-TATTGTTCCACCTCTATGGTTGCAGACCTCTTTA  997

seq1  GCTCCTTGAGTACTTTCTCTAGCTC-CTCCATTGGGGGCGTACTCACTGA  1048
      ||||||||||||| ||||||||||| || |||| ||||||||||||||||
seq2  GCTCCTTGAGTAC-TTCTCTAGCTCTCTTCATT-GGGGCGTACTCACTGA  1045

seq1  AAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAA  1098
      |||||||||| ||||||   ||||||| ||||||   | || |||| || 
seq2  AAAGTGGATA-TAGCCC--GAACTTAG-ATACCC---AGATTAGAT-CA-  1086

seq1  TTTGCAAAACACATGAAACTCAAGAAGAACAA  1130
       |||| ||||| |||||  |||||||||||||
seq2  -TTGC-AAACA-ATGAACTTCAAGAAGAACAA  1115

seq1: chr16_53527608_53528151
seq2: B6Ng01-078J06.g_582_1124 (reverse)

seq1  TAGCACTTAAAGAATGGCACATGGGA-GAATAGCTTTATGAGCATGTACA  49
      ||||||||||||||| |||||||||| |||||||||||||||||||| | 
seq2  TAGCACTTAAAGAAT-GCACATGGGAGGAATAGCTTTATGAGCATGT-CC  48

seq1  ATCAAAAATA-TCCTAGTGAATAAGGGAGTCAATATTATGGACAAACTGA  98
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  ATCAAAAATATTCCTAGTGAATAAGGGAGTCAAT-TTATGGACAAACTGA  97

seq1  TAAGAATTTTAAAATCAGGAATGACATGTAGATGGATATATGCTCACCTT  148
      | |||||||  ||||||||||||||||||||||||||| |||||||||||
seq2  TTAGAATTT--AAATCAGGAATGACATGTAGATGGATA-ATGCTCACCTT  144

seq1  CATTAAACATGCTGGTCGTTAGTGCCTGGTAGCCTGTGACAGTAGAGCTG  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACATGCTGGTCGTTAGTGCCTGGTAGCCTGTGACAGTAGAGCTG  194

seq1  TGAGTTAGCTTAGACTGAAGCAGAGAGAGTTATGTCTTGATGGATACTGG  248
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGCTAAGACTGAAGCAGAGAGAGTTATGTCTTGATGGATACTGG  244

seq1  TGTTCAGCATCCTTTCTTCTTTTTTGTTTTAAAAATCTTTTT--ATTTTC  296
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TGTTCAGCATCCTTTCTTCTTTTTTGTTTTAAAAATCTTTTTTATTTTTC  294

seq1  TTTTTTATTAGATATTTTATTTACATTTTTAATGTTATCCCCTTT-CCTA  345
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  TTTTTTATTAGATATTTTATTTACATTTTTAATGTAATCCCCTTTCCCTA  344

seq1  GTTTCCCCTCTGAAAACCCCCTATCCTTTTCCCCCTCCGACTGCTCACCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCTCTGAAAACCCCCTATCCTTTTCCCCCTCCGACTGCTCACCA  394

seq1  ACTCACCTACTCTTGCTTCCTGACCCTGACATTCTCCTATCCTGGGGCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTACTCTTGCTTCCTGACCCTGACATTCTCCTATCCTGGGGCAT  444

seq1  AGAACCATCACAGGACCAAGGGCCTCTCCTCTCATTGATGACCGACTAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATCACAGGACCAAGGGCCTCTCCTCTCATTGATGACCGACTAGG  494

seq1  CCATCCTCTACTAGGGCCATGAGTCCAACCATGTGTTTTCTTTGGTTGG  544
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCTACTAGGGCCATGAGTCCAACCATGTGTTTTCTTTGGTTGG  543