BAC Information

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BAC

Clone NameB6Ng01-079C06
Chromosome16 (Build37)
Map Location 88,199,727 - 88,333,370
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079C06.bB6Ng01-079C06.g
ACCDH894639DH894640
length3301,142
definitionDH894639|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C06, 5' end.DH894640|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,199,727 - 88,200,056)(88,332,197 - 88,333,370)
sequence
ttaaataagtttttaaaaaaaaaataaacagattcatttattttctacat
gcatttagtgttttcctatttatgtgcatgggtgttttcactgcatatat
gtctgtgggagggaatcagaacctctggagttagagacagttgtgagctg
ccttgtggttgctgggaattgatccccgggtcctctgaaagagcagccag
tgctcttaactgctgagttatatctccaccccagagatttttcttctatc
aaatagcttttccttttctcttctcttccctcttctcttctcttctctct
actcttctcttctcttctcttctcttatct
gaattcattttagttgacaaagtgaagctcctctctgcttcaattctcat
catgtaagcaagcttgccagttcctgggggaggcagcaggctacagggca
ttcttctttgggaaatttgagcaagaaataattagctgtgcaccttcgaa
caagctcttgacatgggagaagtggctttgtgtctctgtaaaggtgattg
ccctaatgtgctgttacatgtatcaaaagcaaggactgtcagcgcctcat
gaaaagcttagcttttgcttggctttcatggaccacttttttttttttaa
gttggtgtttgtagcttagttattacaatgtcacctattgctttgatgga
tttttctaggtgtcattgtgagatgttccctgaattttgggaaagaagga
gctaattaaaatgggtaggaaggtagcatagcctccttgattatttcttg
gtgtagtctaagataacagaccaagaagttatgtaaagtttgatgcccac
aatgaataaatcaactacaatataacctggacttccaagtttggagatat
caaaaggagcctaaagaaactcaaacagtgcctctttcttaggttgaaca
tgctaggagctctgaggtcaggccaatgattgaactaggcttagtaactg
atgtaaagacattttaagagcaggtaaaattagttctatggatttttctc
ccatgactaaagaaatgtctcgagttaatacaactatccgcttgactagg
tactcaaaagacaaaggaataattcccctttaaagaagaaaatttaaaag
ccataagtaaacttttagcttaatgttccactccagaatggcagaaaatt
gggcaaatcggcaattacactgtgcaagagtaataattaatgttaagcta
tgaaagatattaatcatttctcagcagagtgcctttcagatgttttgatg
ttaaaatgccattcaaactcattatttagcattttgatgtctgctgtgtg
tgctccctcagtcgagatgaagacccaaggatagcactcacagatacagc
agagcctccagctctgaaggaaactgtgagaacagaaagctcacaactag
gctatctagactttgatgtaaaaagaatgcctgtacaatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88199727_88200056
seq2: B6Ng01-079C06.b_52_381

seq1  TTAAATAAGTTTTTAAAAAAAAAATAAACAGATTCATTTATTTTCTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGTTTTTAAAAAAAAAATAAACAGATTCATTTATTTTCTACAT  50

seq1  GCATTTAGTGTTTTCCTATTTATGTGCATGGGTGTTTTCACTGCATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGTGTTTTCCTATTTATGTGCATGGGTGTTTTCACTGCATATAT  100

seq1  GTCTGTGGGAGGGAATCAGAACCTCTGGAGTTAGAGACAGTTGTGAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGGAGGGAATCAGAACCTCTGGAGTTAGAGACAGTTGTGAGCTG  150

seq1  CCTTGTGGTTGCTGGGAATTGATCCCCGGGTCCTCTGAAAGAGCAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGTTGCTGGGAATTGATCCCCGGGTCCTCTGAAAGAGCAGCCAG  200

seq1  TGCTCTTAACTGCTGAGTTATATCTCCACCCCAGAGATTTTTCTTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAACTGCTGAGTTATATCTCCACCCCAGAGATTTTTCTTCTATC  250

seq1  AAATAGCTTTTCCTTTTCTCTTCTCTTCCCTCTTCTCTTCTCTTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTTTTCCTTTTCTCTTCTCTTCCCTCTTCTCTTCTCTTCTCTCT  300

seq1  TCTCTTCTCTTCTCTTCTCTTCTCTTCTCT  330
       ||||||||||||||||||||||||| |||
seq2  ACTCTTCTCTTCTCTTCTCTTCTCTTATCT  330

seq1: chr16_88332197_88333370
seq2: B6Ng01-079C06.g_68_1209 (reverse)

seq1  ATCATATGTACATGGCATTCTTTTTTACATTCAAAAAAGTTTCTAGAATA  50
      ||||| |||||| ||||||| |||||||| |||||      ||||| |||
seq2  ATCAT-TGTACA-GGCATTC-TTTTTACA-TCAAA-----GTCTAG-ATA  40

seq1  GCCTAGTTTGTGAGCTTTTCTG-TCTCACAGTTTTCCTTCAGAGCTGGAG  99
      |||||| |||||||| |||||| |||||||| ||||||||||||||||||
seq2  GCCTAG-TTGTGAGC-TTTCTGTTCTCACAG-TTTCCTTCAGAGCTGGAG  87

seq1  GCTCTGCCTTGTATCCCTGTTGAGTGCTATCCTGTGGGTCTTCATCTCGG  149
      |||||||  |||||  ||| ||||||||||||| |||||||||||||| |
seq2  GCTCTGC--TGTAT--CTG-TGAGTGCTATCCT-TGGGTCTTCATCTC-G  130

seq1  ACTGAGTGAGCACACACAGCAGACATTCAAAAAATGCTAAATAAATGAGT  199
      |||||| |||||||||||||||||||    |||||||||||| |||||| 
seq2  ACTGAGGGAGCACACACAGCAGACAT---CAAAATGCTAAAT-AATGAG-  175

seq1  TTTGAATTGGCATTTTAAACATTCAAAACATCTTGAAAAGGCACTCTGCT  249
      |||||| ||||||||| |||| |||||||||||   ||||||||||||||
seq2  TTTGAA-TGGCATTTT-AACA-TCAAAACATCT--GAAAGGCACTCTGCT  220

seq1  GAAGAAATGATTAATATCTTTCATAGCTTAACATTAATTATTACTCTTGC  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGAAATGATTAATATCTTTCATAGCTTAACATTAATTATTACTCTTGC  269

seq1  ACAGTGTAATTGCCGATTTTGCCCAATTTTCTGCCATTCTGGAGTGGAAC  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAGTGTAATTGCCGA-TTTGCCCAATTTTCTGCCATTCTGGAGTGGAAC  318

seq1  ATTAAGCTAAAAGTTTACTTATGGCTTTTTAAATTTTCTTCTTTAAAGGG  399
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTAAGCTAAAAGTTTACTTATGGC-TTTTAAATTTTCTTCTTTAAAGGG  367

seq1  GAATTATTCCTTTGTCTTTTGAGTACCTAGTCAAGCGGATAGTTGTATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTCCTTTGTCTTTTGAGTACCTAGTCAAGCGGATAGTTGTATTA  417

seq1  ACTCGAGACATTTCTTTAGTCATGGGAGAAAAATCCATAGAACTAATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGACATTTCTTTAGTCATGGGAGAAAAATCCATAGAACTAATTTT  467

seq1  ACCTGCTCTTAAAATGTCTTTACATCAGTTACTAAGCCTAGTTCAATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCTTAAAATGTCTTTACATCAGTTACTAAGCCTAGTTCAATCAT  517

seq1  TGGCCTGACCTCAGAGCTCCTAGCATGTTCAACCTAAGAAAGAGGCACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGACCTCAGAGCTCCTAGCATGTTCAACCTAAGAAAGAGGCACTG  567

seq1  TTTGAGTTTCTTTAGGCTCCTTTTGATATCTCCAAACTTGGAAGTCCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTCTTTAGGCTCCTTTTGATATCTCCAAACTTGGAAGTCCAGG  617

seq1  TTATATTGTAGTTGATTTATTCATTGTGGGCATCAAACTTTACATAACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTAGTTGATTTATTCATTGTGGGCATCAAACTTTACATAACTT  667

seq1  CTTGGTCTGTTATCTTAGACTACACCAAGAAATAATCAAGGAGGCTATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTGTTATCTTAGACTACACCAAGAAATAATCAAGGAGGCTATGC  717

seq1  TACCTTCCTACCCATTTTAATTAGCTCCTTCTTTCCCAAAATTCAGGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCCTACCCATTTTAATTAGCTCCTTCTTTCCCAAAATTCAGGGAA  767

seq1  CATCTCACAATGACACCTAGAAAAATCCATCAAAGCAATAGGTGACATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACAATGACACCTAGAAAAATCCATCAAAGCAATAGGTGACATTG  817

seq1  TAATAACTAAGCTACAAACACCAACTTAAAAAAAAAAAAGTGGTCCATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTAAGCTACAAACACCAACTTAAAAAAAAAAAAGTGGTCCATGA  867

seq1  AAGCCAAGCAAAAGCTAAGCTTTTCATGAGGCGCTGACAGTCCTTGCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGCAAAAGCTAAGCTTTTCATGAGGCGCTGACAGTCCTTGCTTT  917

seq1  TGATACATGTAACAGCACATTAGGGCAATCACCTTTACAGAGACACAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGTAACAGCACATTAGGGCAATCACCTTTACAGAGACACAAAG  967

seq1  CCACTTCTCCCATGTCAAGAGCTTGTTCGAAGGTGCACAGCTAATTATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTCCCATGTCAAGAGCTTGTTCGAAGGTGCACAGCTAATTATTT  1017

seq1  CTTGCTCAAATTTCCCAAAGAAGAATGCCCTGTAGCCTGCTGCCTCCCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAAATTTCCCAAAGAAGAATGCCCTGTAGCCTGCTGCCTCCCCC  1067

seq1  AGGAACTGGCAAGCTTGCTTACATGATGAGAATTGAAGCAGAGAGGAGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGCAAGCTTGCTTACATGATGAGAATTGAAGCAGAGAGGAGCT  1117

seq1  TCACTTTGTCAACTAAAATGAATTC  1174
      |||||||||||||||||||||||||
seq2  TCACTTTGTCAACTAAAATGAATTC  1142