BAC Information

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BAC

Clone NameB6Ng01-080N16
Chromosome16 (Build37)
Map Location 89,419,076 - 89,659,874
singlet/doubletdoublet
Overlap geneKrtap6-2, 5430433J05Rik
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080N16.bB6Ng01-080N16.g
ACCDH895874DH895875
length1,145126
definitionDH895874|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N16, 5' end.DH895875|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,419,076 - 89,420,209)(89,659,778 - 89,659,874)
sequence
gaattcagtaaatatatttgcatttctatcggatacagaataagtaataa
tatacttttcttttaacttatcccttttcgaggttttaatcctccgacta
gcacccaagtctaatgctactgcctcaataagtctgaaaataatctctcc
gaattcattcctccgttaagatcccaggctgtgtctgttaccctaggacg
tttgccataagctcttatgtaggtgttgtccttcccctcttaccctttcc
atcctcatttcagaaatggtgccctttccgaagctcagtgaagaaatgct
cacgtgacttgtgcttagatgaatgaagcccagagatatgtgtggaaaat
attgggggaacacattattgatgtaacataggctcacaagaatcaaatca
aggtgctctgtaaaacttagtcaatgaaaagtcaattcagctttcaatat
aagccaaggcaggagtaacttacaaatgaatacacaaaagtttgttagaa
accagtacccattttattgaaaagaaaccatgctcccagctgtagatgta
acagccatgttcaggcaacagaaacagatagcaagacagcagaactagtg
agacgagactgcagatgccaggatcacaaagttgccttctaaaaatgtgc
agctggaggtcaaagactttgtcaaatttgtagtttcctggatatagagc
tcttggccatggatctttaaagaagcattttcttcagaagtgtcagttta
ggagcaactgatcctctctcaggggtgttctaacagcaagaataacatct
tctgtagcaagatggtccgtagccacagcagccagatctgtagtaagagc
catatccacagccacagccacttccatagccagagccgtatccagagcca
tagccagagccatatccacagccatagccagagccatatccacagccata
gccagagccatatccacagccatagccaggagccatttccacagccatag
cccgagccatatccacagccatagccaggggccatattccacagccatag
ccagaggccgtatcccagcctaggcgagcctattccacaggctagccgag
cgagccacagcctatgcggactagccagctagccgagcatagcca
aaccggatggtctgaaataaagcaaactttccttagcacagagggcctct
ttcttccatttttgggaatgagagtgctccagatggagtttcctttctct
cctctcctctcctctcctctccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89419076_89420209
seq2: B6Ng01-080N16.b_50_1194

seq1  GAATTCAGTAAATATATTTGCATTTCTATCGGATACAGAATAAGTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAATATATTTGCATTTCTATCGGATACAGAATAAGTAATAA  50

seq1  TATACTTTTCTTTTAACTTATCCCTTTTCGAGGTTTTAATCCTCCGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTCTTTTAACTTATCCCTTTTCGAGGTTTTAATCCTCCGACTA  100

seq1  GCACCCAAGTCTAATGCTACTGCCTCAATAAGTCTGAAAATAATCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAAGTCTAATGCTACTGCCTCAATAAGTCTGAAAATAATCTCTCC  150

seq1  GAATTCATTCCTCCGTTAAGATCCCAGGCTGTGTCTGTTACCCTAGGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTCCGTTAAGATCCCAGGCTGTGTCTGTTACCCTAGGACG  200

seq1  TTTGCCATAAGCTCTTATGTAGGTGTTGTCCTTCCCCTCTTACCCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATAAGCTCTTATGTAGGTGTTGTCCTTCCCCTCTTACCCTTTCC  250

seq1  ATCCTCATTTCAGAAATGGTGCCCTTTCCGAAGCTCAGTGAAGAAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATTTCAGAAATGGTGCCCTTTCCGAAGCTCAGTGAAGAAATGCT  300

seq1  CACGTGACTTGTGCTTAGATGAATGAAGCCCAGAGATATGTGTGGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGACTTGTGCTTAGATGAATGAAGCCCAGAGATATGTGTGGAAAAT  350

seq1  ATTGGGGGAACACATTATTGATGTAACATAGGCTCACAAGAATCAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGAACACATTATTGATGTAACATAGGCTCACAAGAATCAAATCA  400

seq1  AGGTGCTCTGTAAAACTTAGTCAATGAAAAGTCAATTCAGCTTTCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCTGTAAAACTTAGTCAATGAAAAGTCAATTCAGCTTTCAATAT  450

seq1  AAGCCAAGGCAGGAGTAACTTACAAATGAATACACAAAAGTTTGTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGGCAGGAGTAACTTACAAATGAATACACAAAAGTTTGTTAGAA  500

seq1  ACCAGTACCCATTTTATTGAAAAGAAACCATGCTCCCAGCTGTAGATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCCATTTTATTGAAAAGAAACCATGCTCCCAGCTGTAGATGTA  550

seq1  ACAGCCATGTTCAGGCAACAGAAACAGATAGCAAGACAGCAGAACTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATGTTCAGGCAACAGAAACAGATAGCAAGACAGCAGAACTAGTG  600

seq1  AGACGAGACTGCAGATGCCAGGATCACAAAGTTGCCTTCTAAAAATGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGACTGCAGATGCCAGGATCACAAAGTTGCCTTCTAAAAATGTGC  650

seq1  AGCTGGAGGTCAAAGACTTTGTCAAATTTGTAGTTTCCTGGATATAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGGTCAAAGACTTTGTCAAATTTGTAGTTTCCTGGATATAGAGC  700

seq1  TCTTGGCCATGGATCTTTAAAGAAGCATTTTCTTCAGAAGTGTCAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCATGGATCTTTAAAGAAGCATTTTCTTCAGAAGTGTCAGTTTA  750

seq1  GGAGCAACTGATCCTCTCTCAGGGGTGTTCTAACAGCAAGAATAACATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAACTGATCCTCTCTCAGGGGTGTTCTAACAGCAAGAATAACATCT  800

seq1  TCTGTAGCAAGATGGTCCGTAGCCACAGCAGCCAGATCTGTAGTAAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCAAGATGGTCCGTAGCCACAGCAGCCAGATCTGTAGTAAGAGC  850

seq1  CATATCCACAGCCACAGCCACTTCCATAGCCAGAGCCGTATCCAGAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCACAGCCACAGCCACTTCCATAGCCAGAGCCGTATCCAGAGCCA  900

seq1  TAGCCAGAGCCATATCCACAGCCATAGCCAGAGCCATATCCACAGCCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAGCCATATCCACAGCCATAGCCAGAGCCATATCCACAGCCATA  950

seq1  GCCAGAGCCATATCCACAGCCATAGCCA-GAGCCATATCCACAGCCATAG  999
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  GCCAGAGCCATATCCACAGCCATAGCCAGGAGCCATTTCCACAGCCATAG  1000

seq1  CCAGAGCCATATCCACAGCCATAGCCA-GAGCCATA-TCCACAGCCATAG  1047
      || |||||||||||||||||||||||| | |||||| |||||||||||||
seq2  CCCGAGCCATATCCACAGCCATAGCCAGGGGCCATATTCCACAGCCATAG  1050

seq1  CCAGA-GCCGTATCCACAGCCATAGCCAGAGCCATATCCACAGCCATAGC  1096
      ||||| ||||||||| ||||| ||| | |||||   ||||||| | ||||
seq2  CCAGAGGCCGTATCC-CAGCC-TAGGC-GAGCCTATTCCACAGGC-TAGC  1096

seq1  CAGAGCCAGAGCCACAGCC--------ATAGCCAG------AACCATAGC  1132
      | ||||  |||||||||||         |||||||       | ||||||
seq2  C-GAGC--GAGCCACAGCCTATGCGGACTAGCCAGCTAGCCGAGCATAGC  1143

seq1  CA  1134
      ||
seq2  CA  1145

seq1: chr16_89659778_89659874
seq2: B6Ng01-080N16.g_29_126 (reverse)

seq1  GAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAAAGGAAACTCCATCTGGAG  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGAGGAGAGGAGAGGAGAGGAGAGAAAGGAAACTCCATCTGGAG  50

seq1  CACTCTCATTCCC-TAAATGGAAGAAAGAGGCCCTCTGTGCTAAGGAA  97
      |||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CACTCTCATTCCCAAAAATGGAAGAAAGAGGCCCTCTGTGCTAAGGAA  98