BAC Information

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BAC

Clone NameB6Ng01-081L01
Chromosome16 (Build37)
Map Location 89,686,245 - 89,895,378
singlet/doubletdoublet
Overlap geneTiam1
Upstream gene2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081L01.bB6Ng01-081L01.g
ACCDH896463DH896464
length1,2091,043
definitionDH896463|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L01, 5' end.DH896464|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,686,245 - 89,687,444)(89,894,339 - 89,895,378)
sequence
gaattcatagatatataaactaaggagtatatacaaataaatccccatgc
aaaatagttctattatgggtaagatggctcagcggataaacatgcccatt
actaattctgacatcctgatttagtttgccataagccacaggatggaagg
agaaaaatgatataaactgtcggttgatctccaaacagaaataggttcat
atacaaaacacaccacacatacacagacacacacacacacaaataagtgg
attttttttaattccagaacccagagaaatggtttacggttaaaagcata
cactgctcttgcagaggatccaagttcagttcccagcacatatatcaggt
agttcacagccacctataatctgacaccctcttcaggtctctgtgtccac
ctataagaatatacccgagacacagacatatgcatataatttttaaaata
agtaaaataaatgtttttaaaaataaaaaaaatgtacataacatattccc
accaaaggaagtaccaagatgtgcccagctccctgagtttagcacttcct
tctgggaggtacagtgtgggaggcaaaatcttctgcagtgcaatggagac
tgacagacgcttcctcagccaggtgaccaaggttaacagtggcagtgaaa
actcattttaatagtttgtgtgcctgacatgacgtgaacagactggcatt
tccctccgaactgtcttccttgtaaaaacccccaaaacccaaactttacc
aaaaaaaaaaaaaaatcagataagcctaaattggaaaacacatttgcaaa
actctttctaaacttatcaaggccatcacagacaaactcagtacaaatgt
caccatctaaaggagccctttgaaaccaggatgacccaacgtgagtagca
tgcattcctggacctcaacacacattacacaaataccacacacataaaaa
taaacaacctcagaatgaattaatggagaaatagtataatgaaaacattc
gaaagctgtgaggattagacagatttttaacacactgccttaaattatag
ttaatcaaacccggaatataatcaatatattaatatcggcagttacttat
ctttggctcctgaggaaagagcattctgacctacaagtggcttagactat
cggagcgtctggaattttgaactccggtcctcacaccttgcctgggatga
gctgcagct
gaattctttttcttctcaaagtttttgacccaagggacctctgtcgcaag
cttgaatcgtagatctcagcctccttgtcggccctggagatgcagtccag
tctctaacagccccgtcagccacttcactcccaccggaaaaatctcctgg
caaacatttggctaagagcgtgacctctcagcttggagaaaatgtgctgg
atccaaactaatgcggacaatttcatttgattcaaaaatgatcaaaaaag
aggtcttggccatttttcctgtttgtgtgtgttcagtggttggatttgtt
tccgaaatgggcaggctgtggagttcacatgttaactttggaagtagcac
gttggacgagccttggcatctggcacacagttatttaattcatgtgcttt
ttatgtgtacacatgttgtgtgtagtttgtgctgagagcttcccaccatt
gaagcagggtttagttactgatttcaacccaggacacaatacacactagg
ttgctccttagatttaattgatggcttgatggattttgtccctttggtta
ttctttctttggtaacagactgaggagagggcagcctggggtcatgcaga
atccagggtgtcagcaagtctgggcttggagtttttgcctcctgcgtcct
ggttatttaacctcatgaatttgggttctttttaaaggaagcttatagga
agatccagcattctgggatgaaataaatgtaaaccttagatcactgactc
tggaaggttgttacagatgcccactgaatagtgggtttagtagggaggtc
aaggcgtggcttcaggttctagagttcctcctctgcagctctggggcttt
caaaggataagtaggaaaggggagacgtgccattggtgatctgccctgtg
accaggcacagaatgtctacggggtgcctgagggaaacttaggctggggg
ccattggtgcacacttgaggaaactttcattgaaactaactagaagatgg
aagaatgtgacttggctctaactactactgttggtaagaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89686245_89687444
seq2: B6Ng01-081L01.b_42_1250

seq1  GAATTCATAGATATATAAACTAAGGAGTATATACAAATAAATCCCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATATATAAACTAAGGAGTATATACAAATAAATCCCCATGC  50

seq1  AAAATAGTTCTATTATGGGTAAGATGGCTCAGCGGATAAACATGCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTCTATTATGGGTAAGATGGCTCAGCGGATAAACATGCCCATT  100

seq1  ACTAATTCTGACATCCTGATTTAGTTTGCCATAAGCCACAGGATGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCTGACATCCTGATTTAGTTTGCCATAAGCCACAGGATGGAAGG  150

seq1  AGAAAAATGATATAAACTGTCGGTTGATCTCCAAACAGAAATAGGTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGATATAAACTGTCGGTTGATCTCCAAACAGAAATAGGTTCAT  200

seq1  ATACAAAACACACCACACATACACAGACACACACACACACAAATAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAACACACCACACATACACAGACACACACACACACAAATAAGTGG  250

seq1  ATTTTTTTTAATTCCAGAACCCAGAGAAATGGTTTACGGTTAAAAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAATTCCAGAACCCAGAGAAATGGTTTACGGTTAAAAGCATA  300

seq1  CACTGCTCTTGCAGAGGATCCAAGTTCAGTTCCCAGCACATATATCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCTTGCAGAGGATCCAAGTTCAGTTCCCAGCACATATATCAGGT  350

seq1  AGTTCACAGCCACCTATAATCTGACACCCTCTTCAGGTCTCTGTGTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAGCCACCTATAATCTGACACCCTCTTCAGGTCTCTGTGTCCAC  400

seq1  CTATAAGAATATACCCGAGACACAGACATATGCATATAATTTTTAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAATATACCCGAGACACAGACATATGCATATAATTTTTAAAATA  450

seq1  AGTAAAATAAATGTTTTTAAAAATAAAAAAAATGTACATAACATATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATAAATGTTTTTAAAAATAAAAAAAATGTACATAACATATTCCC  500

seq1  ACCAAAGGAAGTACCAAGATGTGCCCAGCTCCCTGAGTTTAGCACTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGAAGTACCAAGATGTGCCCAGCTCCCTGAGTTTAGCACTTCCT  550

seq1  TCTGGGAGGTACAGTGTGGGAGGCAAAATCTTCTGCAGTGCAATGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGTACAGTGTGGGAGGCAAAATCTTCTGCAGTGCAATGGAGAC  600

seq1  TGACAGACGCTTCCTCAGCCAGGTGACCAAGGTTAACAGTGGCAGTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACGCTTCCTCAGCCAGGTGACCAAGGTTAACAGTGGCAGTGAAA  650

seq1  ACTCATTTTAATAGTTTGTGTGCCTGACATGACGTGAACAGACTGGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTAATAGTTTGTGTGCCTGACATGACGTGAACAGACTGGCATT  700

seq1  TCCCTCCGAACTGTCTTCCTTGTAAAAACCCCCAAAACCCAAACTTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCGAACTGTCTTCCTTGTAAAAACCCCCAAAACCCAAACTTTACC  750

seq1  -AAAAAAAAAAAAAATCAGATAAGCCTAAATTGGAAAACACA-TTGCAAA  798
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAAAAAAAAAAAATCAGATAAGCCTAAATTGGAAAACACATTTGCAAA  800

seq1  ACTC-TTCTAAACTTATCAAGGCCATCACAGACAAACTCAGTACAAATGT  847
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCTAAACTTATCAAGGCCATCACAGACAAACTCAGTACAAATGT  850

seq1  CACCATCTAAAGGAGCCC-TTGAAACCAGGATGACCCAACGTGAGTAGCA  896
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACCATCTAAAGGAGCCCTTTGAAACCAGGATGACCCAACGTGAGTAGCA  900

seq1  TGCATTCCTGGACCTCAACACACA-TACACAAATACCACACACATAAAAA  945
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCATTCCTGGACCTCAACACACATTACACAAATACCACACACATAAAAA  950

seq1  TAAACAACCTCAGAATGAATTAATGGAGAAATAAGTATAATGAAAACATT  995
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAACAACCTCAGAATGAATTAATGGAGAAAT-AGTATAATGAAAACATT  999

seq1  CGAAAGCTGTGAGGATTAAGACAAGATTTTTAACACACTGCCT--AAATA  1043
      ||||||||||||||||| |||| ||||||||||||||||||||  || ||
seq2  CGAAAGCTGTGAGGATT-AGAC-AGATTTTTAACACACTGCCTTAAATTA  1047

seq1  TAGTTAATCAAACACAGAATATAATCATTATTATTATAATC-GCAGTTTA  1092
      ||||||||||||| | ||||||||||| || |||||  ||| |||| |||
seq2  TAGTTAATCAAACCCGGAATATAATCAATA-TATTAATATCGGCAG-TTA  1095

seq1  CTTATTCTTTGCT-CTGAGGAAAGAGCAATACTGACCTACAAGT-GCTAA  1140
      |||||  || ||| ||||||||||||| || ||||||||||||| ||| |
seq2  CTTATCTTTGGCTCCTGAGGAAAGAGC-ATTCTGACCTACAAGTGGCTTA  1144

seq1  AGCATACGGAGCGTCTG--AATTTGAACTCAGGTCCTCACACCCTTGCTG  1188
        |   |||||||||||  | ||||||||| |||||||||||| |  |||
seq2  GACTATCGGAGCGTCTGGAATTTTGAACTCCGGTCCTCACACCTTGCCTG  1194

seq1  G---TAGCTGCAGCT  1200
      |    ||||||||||
seq2  GGATGAGCTGCAGCT  1209

seq1: chr16_89894339_89895378
seq2: B6Ng01-081L01.g_69_1111 (reverse)

seq1  GGCTTCTTA-CAACAGTAGTAG-TAGAGCCAAGTCACATTCTTCCATCTC  48
      ||||||||| |||||||||||| |||||||||||||||||||||||||| 
seq2  GGCTTCTTACCAACAGTAGTAGTTAGAGCCAAGTCACATTCTTCCATCTT  50

seq1  CTAGTTAGGTTCAATGAAGGTCTCCTCAAGTGTGCA-CAATGGCCCCCAG  97
      |||||||| ||||||||| || |||||||||||||| |||||||||||||
seq2  CTAGTTAGTTTCAATGAAAGTTTCCTCAAGTGTGCACCAATGGCCCCCAG  100

seq1  CCTAAGTTTCCCTCAGGCACCCCGTAGACATTCTGTGCCTGGTCACAGGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTTTCCCTCAGGCACCCCGTAGACATTCTGTGCCTGGTCACAGGG  150

seq1  CAGATCACCAATGGCACGTCTCCCCTTTCCTACTTATCCTTTGAAAGCCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACCAATGGCACGTCTCCCCTTTCCTACTTATCCTTTGAAAGCCC  200

seq1  CAGAGCTGCAGAGGAGGAACTCTAGAACCTGAAGCCACGCCTTGACCTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGCAGAGGAGGAACTCTAGAACCTGAAGCCACGCCTTGACCTCC  250

seq1  CTACTAAACCCACTATTCAGTGGGCATCTGTAACAACCTTCCAGAGTCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAACCCACTATTCAGTGGGCATCTGTAACAACCTTCCAGAGTCAG  300

seq1  TGATCTAAGGTTTACATTTATTTCATCCCAGAATGCTGGATCTTCCTATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAAGGTTTACATTTATTTCATCCCAGAATGCTGGATCTTCCTATA  350

seq1  AGCTTCCTTTAAAAAGAACCCAAATTCATGAGGTTAAATAACCAGGACGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTTTAAAAAGAACCCAAATTCATGAGGTTAAATAACCAGGACGC  400

seq1  AGGAGGCAAAAACTCCAAGCCCAGACTTGCTGACACCCTGGATTCTGCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAAAAACTCCAAGCCCAGACTTGCTGACACCCTGGATTCTGCAT  450

seq1  GACCCCAGGCTGCCCTCTCCTCAGTCTGTTACCAAAGAAAGAATAACCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGGCTGCCCTCTCCTCAGTCTGTTACCAAAGAAAGAATAACCAA  500

seq1  AGGGACAAAATCCATCAAGCCATCAATTAAATCTAAGGAGCAACCTAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAAATCCATCAAGCCATCAATTAAATCTAAGGAGCAACCTAGTG  550

seq1  TGTATTGTGTCCTGGGTTGAAATCAGTAACTAAACCCTGCTTCAATGGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTGTCCTGGGTTGAAATCAGTAACTAAACCCTGCTTCAATGGTG  600

seq1  GGAAGCTCTCAGCACAAACTACACACAACATGTGTACACATAAAAAGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTCAGCACAAACTACACACAACATGTGTACACATAAAAAGCAC  650

seq1  ATGAATTAAATAACTGTGTGCCAGATGCCAAGGCTCGTCCAACGTGCTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAAATAACTGTGTGCCAGATGCCAAGGCTCGTCCAACGTGCTAC  700

seq1  TTCCAAAGTTAACATGTGAACTCCACAGCCTGCCCATTTCGGAAACAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGTTAACATGTGAACTCCACAGCCTGCCCATTTCGGAAACAAAT  750

seq1  CCAACCACTGAACACACACAAACAGGAAAAATGGCCAAGACCTCTTTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACTGAACACACACAAACAGGAAAAATGGCCAAGACCTCTTTTTT  800

seq1  GATCATTTTTGAATCAAATGAAATTGTCCGCATTAGTTTGGATCCAGCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTTTGAATCAAATGAAATTGTCCGCATTAGTTTGGATCCAGCAC  850

seq1  ATTTTCTCCAAGCTGAGAGGTCACGCTCTTAGCCAAATGTTTGCCAGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCAAGCTGAGAGGTCACGCTCTTAGCCAAATGTTTGCCAGGAG  900

seq1  ATTTTTCCGGTGGGAGTGAAGTGGCTGACGGGGCTGTTAGAGACTGGACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCGGTGGGAGTGAAGTGGCTGACGGGGCTGTTAGAGACTGGACT  950

seq1  GCATCTCCAGGGCCGACAAGGAGGCTGAGATCTACGATTCAAGCTTGCGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCAGGGCCGACAAGGAGGCTGAGATCTACGATTCAAGCTTGCGA  1000

seq1  CAGAGGTCCCTTGGGTCAAAAACTTTGAGAAGAAAAAGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCCCTTGGGTCAAAAACTTTGAGAAGAAAAAGAATTC  1043