BAC Information

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BAC

Clone NameB6Ng01-082F21
Chromosome16 (Build37)
Map Location 80,398,754 - 80,515,099
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F21.bB6Ng01-082F21.g
ACCDH896940DH896941
length1,2671,076
definitionDH896940|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F21, 5' end.DH896941|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,398,754 - 80,400,042)(80,514,002 - 80,515,099)
sequence
gaattcaaagagtatagattttaaaagtacatttttttgtcaaagtaatt
taaatttctaagaaaatgtttcaaaacttaagcactagagattaggaaaa
attaaaatataggacttaaaaacatgtagaaaatgattaatttcaatgag
gttatgtttttttttccaaggggaaagaaatatgcctcttctttatcaac
tcctaattaggaaaacatatattattttcttatcagtgtctggcttttct
gcataataattttgctatctagctgagacatttcaaatattgtattattt
catgttgtgtatatttaatcattttaagcatattttcctatttttgagtt
ccatgactactacttttgcttactgttttggactttttctaagttcatgt
tattatatttaatttttattgaatgcccatgtattcagataggcatttaa
attgctcatgagctatttattcccaagtgacttgtcaggtccttgcaata
ctcccataatataataacttgtctgaataacttttgtctaaaattcaata
aaattttctagtgtctaaaaatattattaccatttgttgaattactttat
aaaattgcaaagtcacattttgtaccgcacaagaattctaccataattag
ctgaattttatgattcacaggttcatcttgaccaaagcaacaagaataag
aatactttgcctatatatatatatactcatcagaaaaatcaataactgta
ctttcggtatcaaaattagctctttaaaatactaatttattaatgctttg
gtggaacttacaagtgtaattaagataaactgcaatataccaggttattt
cttttattgttccgtcataaaataaagctcttaatgattaaaatctgtct
tacaatcactggtagttgtcagaggcaaatacaaaagaccaacgttcatt
ctttcacttgtaattctatttcagtgtgcataagaggaaatctatgcaat
agatggtgatagttaagaaacactgcataatttgacttttaagaaactat
acatcatcaactttttctattagtgcatagccagtaaataatgtgaatca
aattatggtaagctgtttttttaagtatactcttatgatggaataagtct
tcagcatcatctagaagacttattaacgaaggatagtgccaggtttcttt
ggagagaatatattgccgctgccatgcttgtgtaaccaacaaatgtgagg
tcccatcatatacaact
gaattctgttgctggaaggttctaagaaaaccagtgaaagagccatctgg
aaaaactgtaggagacacacagagatcaccaagataacccatgcctaaag
tgatttttttttccagtgacagtgcaagcagaagcagttgtgattaaagg
aagatatactaaagcagaagttgtggttgtgaaatcctctgaatgccagc
atctttcgagatggaatgaagtctccttacagtgtccagagagtgagcaa
agtaggttgttgccatggaaagggtcaccctccagtgatcactaagagag
gagctattgaagtacaaacgctgtaagagcagaaactgacagctgtcaat
gcaagagtcaaaggtccacaacatcttaaggttcttgaagaaaagaaaac
attaaagggcatgtaagttaaagagctgtcattaggcttcttgctttgtc
gcagaagagggagagtcctcttttcctggggcactaggtaggtgttaaat
gtgaatgtgtaatcaaataacctaagatgttattattgttaataatcagt
gcttttgtaatttttttattatggcaagcacctgcagatattcattttct
tgtaaaataagctaatattgtttacagaaagacagttcaactttccaatt
agcaactgatgtactattgttgactatgctgcttcccttaagcaaaggga
ccatcaatcaaacagcaagcaagcttatccttatgccagccattttggag
attccactaatacgtcaaagacgttcagaaagatcacagctgcatggtct
ggctcctgaagaggcaaccgcagccagcctcgtttcatatagtttgttat
gaaatttttgctaacacaattgccagtgaaccaatatcctccagccattt
ttatctggacacatgagacctattagaacatcatttgtctgagtgaggga
gcatgctgtaaactgcgcagacacaaacttttgtttgcacactagtaggt
tgctgtgatgtgcaacacttctgctgataataaaatatttactagagagt
agtagtgaatgtcagcctcttttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80398754_80400042
seq2: B6Ng01-082F21.b_46_1312

seq1  GAATTCAAAGAGTATAGATTTTAAAAGTACATTTTTTTGTCAAAGTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGTATAGATTTTAAAAGTACATTTTTTTGTCAAAGTAATT  50

seq1  TAAATTTCTAAGAAAATGTTTCAAAACTTAAGCACTAGAGATTAGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCTAAGAAAATGTTTCAAAACTTAAGCACTAGAGATTAGGAAAA  100

seq1  ATTAAAATATAGGACTTAAAAACATGTAGAAAATGATTAATTTCAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATATAGGACTTAAAAACATGTAGAAAATGATTAATTTCAATGAG  150

seq1  GTTATGTTTTTTTTTCCAAGGGGAAAGAAATATGCCTCTTCTTTATCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTTTTTTTTCCAAGGGGAAAGAAATATGCCTCTTCTTTATCAAC  200

seq1  TCCTAATTAGGAAAACATATATTATTTTCTTATCAGTGTCTGGCTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTAGGAAAACATATATTATTTTCTTATCAGTGTCTGGCTTTTCT  250

seq1  GCATAATAATTTTGCTATCTAGCTGAGACATTTCAAATATTGTATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATAATTTTGCTATCTAGCTGAGACATTTCAAATATTGTATTATTT  300

seq1  CATGTTGTGTATATTTAATCATTTTAAGCATATTTTCCTATTTTTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTGTATATTTAATCATTTTAAGCATATTTTCCTATTTTTGAGTT  350

seq1  CCATGACTACTACTTTTGCTTACTGTTTTGGACTTTTTCTAAGTTCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTACTACTTTTGCTTACTGTTTTGGACTTTTTCTAAGTTCATGT  400

seq1  TATTATATTTAATTTTTATTGAATGCCCATGTATTCAGATAGGCATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTTAATTTTTATTGAATGCCCATGTATTCAGATAGGCATTTAA  450

seq1  ATTGCTCATGAGCTATTTATTCCCAAGTGACTTGTCAGGTCCTTGCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCATGAGCTATTTATTCCCAAGTGACTTGTCAGGTCCTTGCAATA  500

seq1  CTCCCATAATATAATAACTTGTCTGAATAACTTTTGTCTAAAATTCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATAATATAATAACTTGTCTGAATAACTTTTGTCTAAAATTCAATA  550

seq1  AAATTTTCTAGTGTCTAAAAATATTATTACCATTTGTTGAATTACTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTAGTGTCTAAAAATATTATTACCATTTGTTGAATTACTTTAT  600

seq1  AAAATTGCAAAGTCACATTTTGTACCGCACAAGAATTCTACCATAATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCAAAGTCACATTTTGTACCGCACAAGAATTCTACCATAATTAG  650

seq1  CTGAATTTTATGATTCACAGGTTCATCTTGACCAAAGCAACAAGAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTATGATTCACAGGTTCATCTTGACCAAAGCAACAAGAATAAG  700

seq1  AATACTTTGCCTATATATATATATACTCATCAGAAAAATCAATAACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTGCCTATATATATATATACTCATCAGAAAAATCAATAACTGTA  750

seq1  CTTTCGGTATCAAAATTAGCTCTTTAAAATACTAATTTATTAATGCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGGTATCAAAATTAGCTCTTTAAAATACTAATTTATTAATGCTTTG  800

seq1  GTGGAACTTACAAGTGTAATTAAGATAAACTGCAATATACCAGGTTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTTACAAGTGTAATTAAGATAAACTGCAATATACCAGGTTATTT  850

seq1  CTTTTATTGTTCCGTCATAAAATAAAGCTCTTAATGATTAAAATCTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGTTCCGTCATAAAATAAAGCTCTTAATGATTAAAATCTGTCT  900

seq1  TACAATCACTGGTAGTTGTCAGAGGCAAATACAAAAAGACCAACGTTCAT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACAATCACTGGTAGTTGTCAGAGGCAAATAC-AAAAGACCAACGTTCAT  949

seq1  TCTTTCACTTGTAATTCTATTTCAGTGTGCATAAGAGGAAATCTATGCAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTTCACTTGTAATTCTATTTCAGTGTGCATAAGAGGAAATCTATGC-A  998

seq1  ATAGATGGTGATAGTTAAGAAACACTGCATTAATTTTGACTTTTTAAGGA  1050
      ||||||||||||||||||||||||||||||  | ||||||||||  | ||
seq2  ATAGATGGTGATAGTTAAGAAACACTGCAT--AATTTGACTTTT--AAGA  1044

seq1  AACTATACCATCATCAAC-TTTTCTATTAGTGCATAGCCAGTTAGATAAT  1099
      ||||||| |||||||||| |||||||||||||||||||||| || |||||
seq2  AACTATA-CATCATCAACTTTTTCTATTAGTGCATAGCCAG-TAAATAAT  1092

seq1  GTGAATCAAATTTATTGGTAAAAGCTGTTTTTTTAAGTATACCTCTATGA  1149
      ||||||||||||   ||||  |||||||||||||||||||||   |||||
seq2  GTGAATCAAATT--ATGGT--AAGCTGTTTTTTTAAGTATACTCTTATGA  1138

seq1  TGGAATTATGCTACAAGCATCCATCTAGAAAGACTTTATTTAAACAGAAA  1199
      |||||| |  || | ||||| ||||||| ||||| |||||  |||   ||
seq2  TGGAATAAGTCTTC-AGCAT-CATCTAG-AAGAC-TTATT--AAC--GAA  1180

seq1  AGATAAGTAGCCAAGTGGTTTCTTTTTGGA-AGAGTA-AT----GCTGCC  1243
       ||| ||| ||||   ||||||  |||||| ||| || ||    ||||||
seq2  GGAT-AGT-GCCA---GGTTTC--TTTGGAGAGAATATATTGCCGCTGCC  1223

seq1  ATGCTTGATAAAACCAAACAAAATGAAGTTTTCAATCATATA-AACT  1289
      ||||||| |  ||||||  ||  ||| |  | | |||||||| ||||
seq2  ATGCTTG-TGTAACCAACAAATGTGAGG--TCCCATCATATACAACT  1267

seq1: chr16_80514002_80515099
seq2: B6Ng01-082F21.g_70_1145 (reverse)

seq1  CATATAAAGAGCTTGACATTTTCACTAACCTACTCTCTATGTAAAATATT  50
      |||| ||||||  |||||  |||||||  |||||||||| || |||||||
seq2  CATA-AAAGAGGCTGACA--TTCACTA--CTACTCTCTA-GT-AAATATT  43

seq1  TTATTTATCCAGCCAGAAGTGTTTTGCACAATCACAGCAAACCTAACCTA  100
      ||| |||| ||| ||||||||  |||||| |||||||| ||||||  |||
seq2  TTA-TTAT-CAG-CAGAAGTG--TTGCAC-ATCACAGC-AACCTA--CTA  84

seq1  GTGTGCAAACAAAAGTTTGTGTCTGCGCAGTTTACAGCATTGCTCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  GTGTGCAAACAAAAGTTTGTGTCTGCGCAGTTTACAGCA-TGCTCCCT-C  132

seq1  ACTTCAGACAAAATGATTGTTCTAATAGGTCTCATGTTGTCCAGATAAAA  200
      || |||||| |||||| ||||||||||||||||||| |||||||||||||
seq2  AC-TCAGAC-AAATGA-TGTTCTAATAGGTCTCATG-TGTCCAGATAAAA  178

seq1  ATGGCTGGAGGATATTGGTTCACTGGCAATTGTGTTAGCAAAAATTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGAGGATATTGGTTCACTGGCAATTGTGTTAGCAAAAATTTCAT  228

seq1  AACAAACTATATGAAACGAGGCTGGCTGCGGTTGCCTCTTCAGGAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTATATGAAACGAGGCTGGCTGCGGTTGCCTCTTCAGGAGCCAG  278

seq1  ACCATGCAGCTGTGATCTTTCTGAACGTCTTTGACGTATTAGTGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAGCTGTGATCTTTCTGAACGTCTTTGACGTATTAGTGGAATCT  328

seq1  CCAAAATGGCTGGCATAAGGATAAGCTTGCTTGCTGTTTGATTGATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGGCTGGCATAAGGATAAGCTTGCTTGCTGTTTGATTGATGGTC  378

seq1  CCTTTGCTTAAGGGAAGCAGCATAGTCAACAATAGTACATCAGTTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTAAGGGAAGCAGCATAGTCAACAATAGTACATCAGTTGCTAA  428

seq1  TTGGAAAGTTGAACTGTCTTTCTGTAAACAATATTAGCTTATTTTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGTTGAACTGTCTTTCTGTAAACAATATTAGCTTATTTTACAAG  478

seq1  AAAATGAATATCTGCAGGTGCTTGCCATAATAAAAAAATTACAAAAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATATCTGCAGGTGCTTGCCATAATAAAAAAATTACAAAAGCAC  528

seq1  TGATTATTAACAATAATAACATCTTAGGTTATTTGATTACACATTCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTAACAATAATAACATCTTAGGTTATTTGATTACACATTCACAT  578

seq1  TTAACACCTACCTAGTGCCCCAGGAAAAGAGGACTCTCCCTCTTCTGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCTACCTAGTGCCCCAGGAAAAGAGGACTCTCCCTCTTCTGCGA  628

seq1  CAAAGCAAGAAGCCTAATGACAGCTCTTTAACTTACATGCCCTTTAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAGAAGCCTAATGACAGCTCTTTAACTTACATGCCCTTTAATGT  678

seq1  TTTCTTTTCTTCAAGAACCTTAAGATGTTGTGGACCTTTGACTCTTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTCAAGAACCTTAAGATGTTGTGGACCTTTGACTCTTGCAT  728

seq1  TGACAGCTGTCAGTTTCTGCTCTTACAGCGTTTGTACTTCAATAGCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTGTCAGTTTCTGCTCTTACAGCGTTTGTACTTCAATAGCTCCT  778

seq1  CTCTTAGTGATCACTGGAGGGTGACCCTTTCCATGGCAACAACCTACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTGATCACTGGAGGGTGACCCTTTCCATGGCAACAACCTACTTT  828

seq1  GCTCACTCTCTGGACACTGTAAGGAGACTTCATTCCATCTCGAAAGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCTCTGGACACTGTAAGGAGACTTCATTCCATCTCGAAAGATGC  878

seq1  TGGCATTCAGAGGATTTCACAACCACAACTTCTGCTTTAGTATATCTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCAGAGGATTTCACAACCACAACTTCTGCTTTAGTATATCTTCC  928

seq1  TTTAATCACAACTGCTTCTGCTTGCACTGTCACTGGAAAAAAAAATCACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCACAACTGCTTCTGCTTGCACTGTCACTGGAAAAAAAAATCACT  978

seq1  TTAGGCATGGGTTATCTTGGTGATCTCTGTGTGTCTCCTACAGTTTTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATGGGTTATCTTGGTGATCTCTGTGTGTCTCCTACAGTTTTTCC  1028

seq1  AGATGGCTCTTTCACTGGTTTTCTTAGAACCTTCCAGCAACAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCTTTCACTGGTTTTCTTAGAACCTTCCAGCAACAGAATTC  1076