BAC Information

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BAC

Clone NameB6Ng01-083B03
Chromosome16 (Build37)
Map Location 81,506,039 - 81,507,140
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083B03.bB6Ng01-083B03.g
ACCDH897436DH897437
length1,0211,092
definitionDH897436|Mus musculus domesticus DNA, BAC clone: B6Ng01-083B03, 5' end.DH897437|Mus musculus domesticus DNA, BAC clone: B6Ng01-083B03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatccattcagtttagcatcagttgcaacgaaagaatgagaagg
agacagcagagtagaatagattgccatagttcatttgatggaaaacaaag
cacttcagagagaagcagaaaacaccaaactgaaaaatacattcatccaa
ttttggaagtcccatagtctaaaagtctcagcaatattaaaagttcaacg
tctcttctgagattcatctaattgcttaaccacaattccctataaaataa
aaaccatgaaggagatggaatgatttcaatatcacatgatatacaattcc
attccaaaatgtcatagtgatgaaattctggaccaaagcagtaccaaaaa
caagctgggcaacctccaatctctttatttccatttctgatgtaaaagca
ctcctcatatccctaactcttttcatctttgttgattgcaacaaacttgt
ttctcctgggctggtgccattctccattatttacttttttcatcaggtat
cttacagttcaacatctctagtattttgggctgttcaagacaacttcagc
tttatcctttcttgttccagtatctgggatgcatacatgatcttatgggt
tcctccaaagggcttgcatcacctctcaagacctgctctctgtagcacta
taggctctggttgactccaagtcaatgctgctgctgttctcaggaatcat
ctcatagtactagcatctacaattagtttgagtcttctgctttagcaata
tcctcctcaaagctttcttcatgatgccaagcctcaacttcttgcatgac
ccctagtctggtacatcaggtgcaactggggctgcacttcacataggctc
actgctctttcacatggcaggcctcagctgctctacatgaccggtaatac
tcatacagtaccactatgttctacattaaagtcaggtggagccgaggtca
ctaggtattcctgggaacacgctctttgtctcaagaaaggcattccgaag
atcactacaggaggcgggttc
gaattcattgcagtatgcgaatgccttaggagttcatatgtctgacttgg
tgtcgtaaattttctttaagaaagacaaagtattaaattcttaatgtgat
ttctaaagcatatttatttttatcttttaaacttttcttaattttaatgt
atttctgtctgtctgtctgtctgtctctctctcgtgtgtgtgtgtgtgtg
tgtgtgtgtctatgtctgtgtctgtggtatatatgagagcctctaacaac
tagaaaacagtgtcagatccttgggtttgtaggtgaatttgcaataacta
atgtgagtactcagcaatttctggaagaatagcaggcatacttaactgct
gagacagctctttcccttaaataatttttgtaatttcagctattaagtga
ctattagatatttgtacagtcaattatcttatattactgttcatgactta
atggaaattaggtcaaatatttagtatttcagctcctattttctctaaca
ttttttgttatcagcattgtctggaggcagagataagatgcaggtcagcc
ttcaggggggaagaaaaattcacattcagacaatttcaggccaagaggca
gaaatgcaaagagaaagtgaagtttgcctcaagcaaataattgagtcaga
aaatagaaaaaatatgaataacagcacctgtgaggtagaggaagttaagg
gagaggctattattatcaggaagttcttagtgtgaatctgaatgcagaac
ttttgctgatttctaataggatctgagttggagagcagtcatgttttgtg
aataggaaggtttaagaataggaaaatagaaacagtttagataatgatat
aagagactatgtggggggtactggtaaaattcaatgagaaattcaataaa
aaaatcattcgtatgagaatttcttgaatgtcctagcacactttctgttt
acacacattcattaagtttaaataagtttgactacagttcactcatctta
acatagttaggaaaatatcacggttattagatttttaagactcattcctg
gctgtgtgtggacatgcttctttatccaattatttggaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81506039_81507140
seq2: B6Ng01-083B03.g_68_1159

seq1  GAATTCATTGCAGTATGCGAATGCCTTAGGAGTTCATATGTCTGACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAGTATGCGAATGCCTTAGGAGTTCATATGTCTGACTTGG  50

seq1  TGTCGTAAATTTTCTTTAAGAAAGACAAAGTATTAAATTCTTAATGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTAAATTTTCTTTAAGAAAGACAAAGTATTAAATTCTTAATGTGAT  100

seq1  TTCTAAAGCATATTTATTTTTATCTTTTAAACTTTTCTTAATTTTAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGCATATTTATTTTTATCTTTTAAACTTTTCTTAATTTTAATGT  150

seq1  ATTTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCGTGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCGTGTGTGTGTGTGTGTG  200

seq1  TGTGTGTGTCTATGTCTGTGTCTGTGGTATATATGAGAGCCTCTAACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTATGTCTGTGTCTGTGGTATATATGAGAGCCTCTAACAAC  250

seq1  TAGAAAACAGTGTCAGATCCTTGGGTTTGTAGGTGAATTTGCAATAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACAGTGTCAGATCCTTGGGTTTGTAGGTGAATTTGCAATAACTA  300

seq1  ATGTGAGTACTCAGCAATTTCTGGAAGAATAGCAGGCATACTTAACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTACTCAGCAATTTCTGGAAGAATAGCAGGCATACTTAACTGCT  350

seq1  GAGACAGCTCTTTCCCTTAAATAATTTTTGTAATTTCAGCTATTAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTCTTTCCCTTAAATAATTTTTGTAATTTCAGCTATTAAGTGA  400

seq1  CTATTAGATATTTGTACAGTCAATTATCTTATATTACTGTTCATGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGATATTTGTACAGTCAATTATCTTATATTACTGTTCATGACTTA  450

seq1  ATGGAAATTAGGTCAAATATTTAGTATTTCAGCTCCTATTTTCTCTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATTAGGTCAAATATTTAGTATTTCAGCTCCTATTTTCTCTAACA  500

seq1  TTTTTTGTTATCAGCATTGTCTGGAGGCAGAGATAAGATGCAGGTCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTATCAGCATTGTCTGGAGGCAGAGATAAGATGCAGGTCAGCC  550

seq1  TTCAGGGGGGAAGAAAAATTCACATTCAGACAATTTCAGGCCAAGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGGGAAGAAAAATTCACATTCAGACAATTTCAGGCCAAGAGGCA  600

seq1  GAAATGCAAAGAGAAAGTGAAGTTTGCCTCAAGCAAATAATTGAGTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAAAGAGAAAGTGAAGTTTGCCTCAAGCAAATAATTGAGTCAGA  650

seq1  AAATAGAAAAAATATGAATAACAGCACCTGTGAGGTAGAGGAAGTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAAAATATGAATAACAGCACCTGTGAGGTAGAGGAAGTTAAGG  700

seq1  GAGAGGCTATTATTATCAGGAAGTTCTTAGTGTGAATCTGAATGCAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTATTATTATCAGGAAGTTCTTAGTGTGAATCTGAATGCAGAAC  750

seq1  TTTTGCTGATTTCTAATAGGATCTGAGTTGGAGAGCAGGTCATGTTTTGT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTGCTGATTTCTAATAGGATCTGAGTTGGAGAGCA-GTCATGTTTTGT  799

seq1  GAATAGGAAGGTTTAAGAATAGGAAAATAGAAACAGTTTAGATAATGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGAAGGTTTAAGAATAGGAAAATAGAAACAGTTTAGATAATGATA  849

seq1  TAAGAGGACTATGTGGGGGGTACTGGTAAAATTCAATGAGAAATTCAATA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGA-GACTATGTGGGGGGTACTGGTAAAATTCAATGAGAAATTCAATA  898

seq1  AAAAAATCATTCGTATGAGAATTTCTTGAATGTCCTAGCACAACTTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAAATCATTCGTATGAGAATTTCTTGAATGTCCTAGCAC-ACTTTCTG  947

seq1  TTTACACACATTCATTAAGTTTAAATAAGTTTGACCTACAGTTCACTGCA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TTTACACACATTCATTAAGTTTAAATAAGTTTGA-CTACAGTTCACT-CA  995

seq1  TCTTAACAATAGTTAGGAAAAAATATCACGGTTATTAGATTTTTAAAGAC  1050
      ||||||| |||||||||  ||||||||||||||||||||||||| |||||
seq2  TCTTAAC-ATAGTTAGG--AAAATATCACGGTTATTAGATTTTT-AAGAC  1041

seq1  TTCAATCCTGGCTGTGTGTGGACATGCTTC-TTATCCCAGTATTTGGAAG  1099
       ||| ||||||||||||||||||||||||| |||||| | ||||||| ||
seq2  -TCATTCCTGGCTGTGTGTGGACATGCTTCTTTATCCAATTATTTGG-AG  1089

seq1  GCT  1102
      |||
seq2  GCT  1092