BAC Information

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BAC

Clone NameB6Ng01-083F20
Chromosome16 (Build37)
Map Location 72,196,838 - 72,341,894
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F20.bB6Ng01-083F20.g
ACCDH897648DH897649
length8011,141
definitionDH897648|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F20, 5' end.DH897649|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,196,838 - 72,197,638)(72,340,731 - 72,341,894)
sequence
gaattcaatttattttctaaaaatagggagagatacaagaagaaattcat
gatagtatatgaggcagctatataaaggcatagaaaatccctgctgcctt
aagccttgtaatcttaaagcatacattgttttctacccttaactaatgaa
attggtagacattgttaaaataataaccacttatggaaccactttggaag
tgtttggctttatgtcttttctgataatctcccaagatgtagcttctatt
ccatagctggagataaagtacccctaagccacagagcaacaagtgacatg
gcaactactgccagctgactgagaccttctgttgctccttaatttgggcc
accatctatcaatattggtgggacaacaccttaaatccaagcatttagag
ggtagtggctggtgagtttcaggccagcctggtttacaaagcaggttcca
ggatacacacaaacccttcttggggaaaaaaaaaatacacacacacacac
acacacacacacacacacacacacacacacaccctttcatcatttactct
tggcaagtgctaaagttaatttaatatctattcctgtactgtcaactgct
acaagtttattgaaaagaactccttcttatggaaaagaatcttgtgtaac
tcattcatttcaaattaatctgaagataatttaacacatgtaaaaatttt
aaaaattatttttactaaattaaaaattattaaatattcctcccagtggt
tatatatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
t
gaattcaccttcaaatctaattgccactcacacccggatctagaaagttt
gatgctgttttttttttcaacaatataaaatacatactggtgataatatt
gtttctcttaaggtagtactataaaataatgctcttttgggttcaattta
ttaataattgaacactataattcaaataaatacttcttacctatatattt
taatgtgcttttaaaattattacctaagaccaaaatattaagaaaaaaat
aaaagcaagcaaaacctacaacaggctcagcatcatctacttatatttag
aagtaaaaaaaaaaaaatcctgaaacacattacaaacttactgagaaaag
gtgctcatagacagatctaataacttggtatctgtttatcaagacttcag
gttcatgctgatacatgctacctaccccttgaagaacactaccttataca
attatgtaattactcatttattcaaaaatatctgtccatctctttcaatg
caaatcattatgaacatcaaatgcttcctggttccaatttttctcataca
tttcttggcaaaattagtctaaatttcccaataatttgcacttttgcatc
tcattatgttgcttcatttgtcatgtgacctgtcttcttttttcacagaa
agcaaacagcgccccctatccctcccaggattctctaccacagagctact
tctcattctccctttcattcaactcagaaaaagtaatgccatatttgctt
tctaagatcatattcttcttgagcttatttcattaaaacccctatgtact
ctgatcttttttttccatttgtttttctatgattttcaaatgtgtaagag
gggagaaatagtctatcccattaactttacagctgccatgtagccctcat
tcaaatatcttaccatgaactcaagtgtccttgtaatggactgtctgtta
gtctctggaattgtggaataatctcatcaggcttctgagatcatttggca
tatttagctaatattagctacatttcagagcatttatcagttgaagagcc
ctcattgatgagcgaaaaaattcatgtaacatgttcgtaggatcttggtg
tgcatcgattccattgcagaatgatgccaatttctattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72196838_72197638
seq2: B6Ng01-083F20.b_44_844

seq1  GAATTCAATTTATTTTCTAAAAATAGGGAGAGATACAAGAAGAAATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTATTTTCTAAAAATAGGGAGAGATACAAGAAGAAATTCAT  50

seq1  GATAGTATATGAGGCAGCTATATAAAGGCATAGAAAATCCCTGCTGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATATGAGGCAGCTATATAAAGGCATAGAAAATCCCTGCTGCCTT  100

seq1  AAGCCTTGTAATCTTAAAGCATACATTGTTTTCTACCCTTAACTAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGTAATCTTAAAGCATACATTGTTTTCTACCCTTAACTAATGAA  150

seq1  ATTGGTAGACATTGTTAAAATAATAACCACTTATGGAACCACTTTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGACATTGTTAAAATAATAACCACTTATGGAACCACTTTGGAAG  200

seq1  TGTTTGGCTTTATGTCTTTTCTGATAATCTCCCAAGATGTAGCTTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCTTTATGTCTTTTCTGATAATCTCCCAAGATGTAGCTTCTATT  250

seq1  CCATAGCTGGAGATAAAGTACCCCTAAGCCACAGAGCAACAAGTGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTGGAGATAAAGTACCCCTAAGCCACAGAGCAACAAGTGACATG  300

seq1  GCAACTACTGCCAGCTGACTGAGACCTTCTGTTGCTCCTTAATTTGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTACTGCCAGCTGACTGAGACCTTCTGTTGCTCCTTAATTTGGGCC  350

seq1  ACCATCTATCAATATTGGTGGGACAACACCTTAAATCCAAGCATTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTATCAATATTGGTGGGACAACACCTTAAATCCAAGCATTTAGAG  400

seq1  GGTAGTGGCTGGTGAGTTTCAGGCCAGCCTGGTTTACAAAGCAGGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGGCTGGTGAGTTTCAGGCCAGCCTGGTTTACAAAGCAGGTTCCA  450

seq1  GGATACACACAAACCCTTCTTGGGGAAAAAAAAAATACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACACAAACCCTTCTTGGGGAAAAAAAAAATACACACACACACAC  500

seq1  ACACACACACACACACACACACACACACACACCCTTTCATCATTTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACCCTTTCATCATTTACTCT  550

seq1  TGGCAAGTGCTAAAGTTAATTTAATATCTATTCCTGTACTGTCAACTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTGCTAAAGTTAATTTAATATCTATTCCTGTACTGTCAACTGCT  600

seq1  ACAAGTTTATTGAAAAGAACTCCTTCTTATGGAAAAGAATCTTGTGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTATTGAAAAGAACTCCTTCTTATGGAAAAGAATCTTGTGTAAC  650

seq1  TCATTCATTTCAAATTAATCTGAAGATAATTTAACACATGTAAAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTTCAAATTAATCTGAAGATAATTTAACACATGTAAAAATTTT  700

seq1  AAAAATTATTTTTACTAAATTAAAAATTATTAAATATTCCTCCCAGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTTTTACTAAATTAAAAATTATTAAATATTCCTCCCAGTGGT  750

seq1  TATATATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAG  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATATATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  800

seq1  T  801
      |
seq2  T  801

seq1: chr16_72340731_72341894
seq2: B6Ng01-083F20.g_68_1208 (reverse)

seq1  CAGAATAGAATATGGGCATCATTCTGTGCCATTGGAATCGATGCACACCA  50
      |||||||||| || ||||||||||||   || ||||||||||||||||||
seq2  CAGAATAGAA-ATTGGCATCATTCTG---CAATGGAATCGATGCACACCA  46

seq1  GATTCTTACCGAACATGTTACATGAATGTTTTTCTGCTCAATCATTTGAG  100
         || || |||||||||||||||||| |||||| |||| ||||  ||||
seq2  AGATCCTA-CGAACATGTTACATGAAT-TTTTTC-GCTC-ATCA-ATGAG  91

seq1  GGCTCTTTCAACTGAATAAAATTGCTTCTGAAATGTTAGCCTAATATTAG  150
      ||||| |||||||| |||||  ||| ||||||||| ||| ||||||||||
seq2  GGCTC-TTCAACTG-ATAAA--TGC-TCTGAAATG-TAG-CTAATATTAG  134

seq1  CTAAATATGGCCAAATGAATCCTCAGAAGCCTTGATGGAGATTATTCCAC  200
      |||||||| |||||||||   |||||||||| |||| |||||||||||||
seq2  CTAAATAT-GCCAAATGA--TCTCAGAAGCC-TGAT-GAGATTATTCCAC  179

seq1  AATTCCAGGAGACTAACAGACAGTCCATTACAAGGACACTTGAGTTCATG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCA-GAGACTAACAGACAGTCCATTACAAGGACACTTGAGTTCATG  228

seq1  GTAAGATATTTGAATGAGGGCTACATGGCAGCTGTAAAGTTAATGGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATATTTGAATGAGGGCTACATGGCAGCTGTAAAGTTAATGGGATA  278

seq1  GACTATTTTCTCCCCTCTTACACATTTGAAAATCATAGAAAAACAAATGG  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTA-TTTCTCCCCTCTTACACATTTGAAAATCATAGAAAAACAAATGG  327

seq1  AAAAAAAAGATCAGAGTACATAGGGGTTTTAATGAAATAAGCTCAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGATCAGAGTACATAGGGGTTTTAATGAAATAAGCTCAAGAAG  377

seq1  AATATGATCTTAGAAAGCAAATATGGCATTACTTTTTCTGAGTTGAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATCTTAGAAAGCAAATATGGCATTACTTTTTCTGAGTTGAATGA  427

seq1  AAGGGAGAATGAGAAGTAGCTCTGTGGTAGAGAATCCTGGGAGGGATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAATGAGAAGTAGCTCTGTGGTAGAGAATCCTGGGAGGGATAGG  477

seq1  GGGCGCTGTTTGCTTTCTGTGAAAAAAGAAGACAGGTCACATGACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCTGTTTGCTTTCTGTGAAAAAAGAAGACAGGTCACATGACAAATG  527

seq1  AAGCAACATAATGAGATGCAAAAGTGCAAATTATTGGGAAATTTAGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACATAATGAGATGCAAAAGTGCAAATTATTGGGAAATTTAGACTA  577

seq1  ATTTTGCCAAGAAATGTATGAGAAAAATTGGAACCAGGAAGCATTTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCAAGAAATGTATGAGAAAAATTGGAACCAGGAAGCATTTGATG  627

seq1  TTCATAATGATTTGCATTGAAAGAGATGGACAGATATTTTTGAATAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATGATTTGCATTGAAAGAGATGGACAGATATTTTTGAATAAATG  677

seq1  AGTAATTACATAATTGTATAAGGTAGTGTTCTTCAAGGGGTAGGTAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTACATAATTGTATAAGGTAGTGTTCTTCAAGGGGTAGGTAGCAT  727

seq1  GTATCAGCATGAACCTGAAGTCTTGATAAACAGATACCAAGTTATTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGCATGAACCTGAAGTCTTGATAAACAGATACCAAGTTATTAGAT  777

seq1  CTGTCTATGAGCACCTTTTCTCAGTAAGTTTGTAATGTGTTTCAGGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATGAGCACCTTTTCTCAGTAAGTTTGTAATGTGTTTCAGGATTT  827

seq1  TTTTTTTTTTACTTCTAAATATAAGTAGATGATGCTGAGCCTGTTGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTACTTCTAAATATAAGTAGATGATGCTGAGCCTGTTGTAGG  877

seq1  TTTTGCTTGCTTTTATTTTTTTCTTAATATTTTGGTCTTAGGTAATAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTGCTTTTATTTTTTTCTTAATATTTTGGTCTTAGGTAATAATT  927

seq1  TTAAAAGCACATTAAAATATATAGGTAAGAAGTATTTATTTGAATTATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCACATTAAAATATATAGGTAAGAAGTATTTATTTGAATTATAG  977

seq1  TGTTCAATTATTAATAAATTGAACCCAAAAGAGCATTATTTTATAGTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTATTAATAAATTGAACCCAAAAGAGCATTATTTTATAGTACT  1027

seq1  ACCTTAAGAGAAACAATATTATCACCAGTATGTATTTTATATTGTTGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAGAGAAACAATATTATCACCAGTATGTATTTTATATTGTTGAAA  1077

seq1  AAAAAAACAGCATCAAACTTTCTAGATCCGGGTGTGAGTGGCAATTAGAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAGCATCAAACTTTCTAGATCCGGGTGTGAGTGGCAATTAGAT  1127

seq1  TTGAAGGTGAATTC  1164
      ||||||||||||||
seq2  TTGAAGGTGAATTC  1141