BAC Information

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BAC

Clone NameB6Ng01-086I05
Chromosome16 (Build37)
Map Location 13,060,881 - 13,221,993
singlet/doubletdoublet
Overlap geneErcc4
Upstream gene2700045P11Rik, EG622509, LOC622553
Downstream geneGt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086I05.bB6Ng01-086I05.g
ACCDH899890DH899891
length1,063997
definitionDH899890|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I05, 5' end.DH899891|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,060,881 - 13,061,626)(13,221,361 - 13,221,993)
sequence
gaattctcttacttgccttggtgtagttacagtctttttctggcttcttt
tagccactgtttcccacctcgaagggtgtatctcaaataagtaacttcag
tctgacacagctgagcctttttagctgaggctcggtcttctgttgcccag
atttcctgtctagatcttgtctttttctttctctcctatcactgaggcca
agattctagtcaaatttctctcttgtctatgatccctctcgtcttctctt
tcttctgcctctcgcctctctctctctctctctctctctctctctctctc
tttcttaatacgccttctctgcctcttacttactggttctactctaaata
tttctcattcgggtatctctctcatctcagacctctctaatctctttcat
ctctattttcacttctcctcactgctatcctccctatttgctactgtcat
ccatctctcctgagtctgctgaagatttgctcttccttacagtctaagct
cacctttttctagacctctatacacatttgtcagagcctggtgattagac
tcataggagctccttacctgggacagaagttttaagtgggcggatgtctg
gatgtctccctcgctggttagcagcttaggatgggcagccctagaagaga
aaacacgtggggcagggaaaggggcgcagctctcacaggtgcctgcacca
ggccactgatatctcaaagtgaaagcactttttctgttaacaagagacag
gatgcaggagaaaggggacaagaagcagccagggaacctgtggtgctctt
ggccagccacttggccagccacgctcacagtgtcttcctcttcttcttgt
ctgtccctcggaggcggggcttggggtcagggtgagggaggtcagctcgg
gctcctaggagcaggaagaaccagtgggcccccagggggcagacactggg
tgggggattcgcagagcagagacttctaggagtcagcccctcgcccctct
ttcttttttgctttcctgtggccgtgaaataatgtggtggggggggcaga
cgtcccgtcccgg
gaattccatcctgcagagacattagcactggtgctgtcacaactgagact
cagattcattctgccactaccaagattccaccacggtactcctgtggcct
cacttcccatttggtcccttgactgtcatgctggtcacactgtccccaac
cctaagccccaggtacctctgacctgttgacaatttctatcatttattat
tttgagatagtcttttaaatggcatcatgtagcatttatcctttttgatt
ggagttttttctcttggcataatgccctggagagctagccaagtggttga
atatgttaacattccttccttcctgtggccaaataagagctgattcatcc
acttatctgttgaaggtcatttgggttgtttctggtttggagctattaca
aatagagctgctaggagggttcatgaacacgatttagcacaaacatacac
tttcatgtttggtagaagtgtgcagggaagcaaagactgggcctcaggga
gcatgtgcactttaaagtcatattcctgttactgtgattgtgtgtgtgca
cgtgcacatgcaacggtgtgcacgtggaggtccaagcacaactccctgca
gttgcttctttccttctgccttccaccttgagttccagagatggagctta
ggctatcaggctggcaccgcaagcacttttacctggtgagtcaggtatgt
ggtccctgtgtgtctaacattgtaagaaactaccaggggctgaggagccc
agtggttaagaacacttgctgctcttggagaggacccaaacctggcaccc
acatggcagctcacaaccacctataactccatttccagagggatatgatg
ccctcttctgaccttctgaagcatccagccatgcatatggtgcatataca
tatatataggcaaaacactcatacacataaaatcaaattaataaatctag
agaaagctaccaaatgtgctctgagttgcataatcatttagatccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_13060881_13061626
seq2: B6Ng01-086I05.b_371_1107

seq1  TACTTACTGGTTCTACTCTAAATATTTCTCATTCGGGTATCTCTCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTGGTTCTACTCTAAATATTTCTCATTCGGGTATCTCTCTCATC  50

seq1  TCAGACCTCTCTAATCTCTTTCATCTCTATTTTCACTTCTCCTCACTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTCTCTAATCTCTTTCATCTCTATTTTCACTTCTCCTCACTGCT  100

seq1  ATCCTCCCTATTTGCTACTGTCATCCATCTCTCCTGAGTCTGCTGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCTATTTGCTACTGTCATCCATCTCTCCTGAGTCTGCTGAAGAT  150

seq1  TTGCTCTTCCTTACAGTCTAAGCTCACCTTTTTCTAGACCTCTATACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTCCTTACAGTCTAAGCTCACCTTTTTCTAGACCTCTATACACA  200

seq1  TTTGTCAGAGCCTGGTGATTAGACTCATAGGAGCTCCTTACCTGGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGAGCCTGGTGATTAGACTCATAGGAGCTCCTTACCTGGGACAG  250

seq1  AAGTTTTAAGTGGGCGGATGTCTGGATGTCTCCCTCGCTGGTTAGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAGTGGGCGGATGTCTGGATGTCTCCCTCGCTGGTTAGCAGCT  300

seq1  TAGGATGGGCAGCCCTAGAAGAGAAAACACGTGGGGCAGGGAAAGGGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGGCAGCCCTAGAAGAGAAAACACGTGGGGCAGGGAAAGGGGCG  350

seq1  CAGCTCTCACAGGTGCCTGCACCAGGCCACTGATATCTCAAAGTGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCACAGGTGCCTGCACCAGGCCACTGATATCTCAAAGTGAAAGC  400

seq1  ACTTTTTCTGTTAACAAGAGACAGGATGCAGGAGAAAGGGGACAAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTGTTAACAAGAGACAGGATGCAGGAGAAAGGGGACAAGAAGC  450

seq1  AGCCAGGGAACCTGTGGTGCTCTTGGCCAGCCACTTGGCCAGCCACGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGAACCTGTGGTGCTCTTGGCCAGCCACTTGGCCAGCCACGCTC  500

seq1  ACAGTGTCTTCCTCTTCTTCTTGTCTGTCCCTCGGAGGCGGGGCTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCTTCCTCTTCTTCTTGTCTGTCCCTCGGAGGCGGGGCTTGGGG  550

seq1  TCAGGGGTGAGGGAGGTCAGCTCGGGCTCCTAGGAGCAGGAAGAACCAGT  600
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-GGGTGAGGGAGGTCAGCTCGGGCTCCTAGGAGCAGGAAGAACCAGT  599

seq1  GGGCCCCCAGGGGGGCAGACACTGGGTGGGGGATTCGGCAGAGGCAGAGA  650
      ||||||||| |||||||||||||||||||||||||| ||||| |||||||
seq2  GGGCCCCCA-GGGGGCAGACACTGGGTGGGGGATTC-GCAGA-GCAGAGA  646

seq1  C-TCTAGGGAGTCAGGCGCCTCGCCCCTCTTTCTTTTTTTGCCTCTCCTG  699
      | |||| ||||||| || |||||||||||||||||||||   || |||||
seq2  CTTCTA-GGAGTCA-GCCCCTCGCCCCTCTTTCTTTTTT--GCTTTCCTG  692

seq1  TGGCCGGTGAAATTAATGGTGGT-GGGGGGGCAGACGTCCCGTCCCGG  746
      ||||| |||||| |||| ||||| ||||||||||||||||||||||||
seq2  TGGCC-GTGAAA-TAAT-GTGGTGGGGGGGGCAGACGTCCCGTCCCGG  737

seq1: chr16_13221361_13221993
seq2: B6Ng01-086I05.g_71_703 (reverse)

seq1  ACTCAAGGTGGAAGGCAGAAGGAAAGAAGCAACTGCAGGGAGTTGTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGTGGAAGGCAGAAGGAAAGAAGCAACTGCAGGGAGTTGTGCTT  50

seq1  GGACCTCCACGTGCACACCGTTGCATGTGCACGTGCACACACACAATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCACGTGCACACCGTTGCATGTGCACGTGCACACACACAATCAC  100

seq1  AGTAACAGGAATATGACTTTAAAGTGCACATGCTCCCTGAGGCCCAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGGAATATGACTTTAAAGTGCACATGCTCCCTGAGGCCCAGTCT  150

seq1  TTGCTTCCCTGCACACTTCTACCAAACATGAAAGTGTATGTTTGTGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCTGCACACTTCTACCAAACATGAAAGTGTATGTTTGTGCTAA  200

seq1  ATCGTGTTCATGAACCCTCCTAGCAGCTCTATTTGTAATAGCTCCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTTCATGAACCCTCCTAGCAGCTCTATTTGTAATAGCTCCAAACC  250

seq1  AGAAACAACCCAAATGACCTTCAACAGATAAGTGGATGAATCAGCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACCCAAATGACCTTCAACAGATAAGTGGATGAATCAGCTCTTA  300

seq1  TTTGGCCACAGGAAGGAAGGAATGTTAACATATTCAACCACTTGGCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCACAGGAAGGAAGGAATGTTAACATATTCAACCACTTGGCTAGC  350

seq1  TCTCCAGGGCATTATGCCAAGAGAAAAAACTCCAATCAAAAAGGATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGCATTATGCCAAGAGAAAAAACTCCAATCAAAAAGGATAAAT  400

seq1  GCTACATGATGCCATTTAAAAGACTATCTCAAAATAATAAATGATAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGATGCCATTTAAAAGACTATCTCAAAATAATAAATGATAGAAA  450

seq1  TTGTCAACAGGTCAGAGGTACCTGGGGCTTAGGGTTGGGGACAGTGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAACAGGTCAGAGGTACCTGGGGCTTAGGGTTGGGGACAGTGTGAC  500

seq1  CAGCATGACAGTCAAGGGACCAAATGGGAAGTGAGGCCACAGGAGTACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGACAGTCAAGGGACCAAATGGGAAGTGAGGCCACAGGAGTACCG  550

seq1  TGGTGGAATCTTGGTAGTGGCAGAATGAATCTGAGTCTCAGTTGTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAATCTTGGTAGTGGCAGAATGAATCTGAGTCTCAGTTGTGACAG  600

seq1  CACCAGTGCTAATGTCTCTGCAGGATGGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  CACCAGTGCTAATGTCTCTGCAGGATGGAATTC  633