BAC Information

Click to search

BAC

Clone NameB6Ng01-087I22
Chromosome16 (Build37)
Map Location 41,590,113 - 41,745,490
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087I22.bB6Ng01-087I22.g
ACCDH900650DH900651
length1,1601,139
definitionDH900650|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I22, 5' end.DH900651|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,590,113 - 41,591,267)(41,744,339 - 41,745,490)
sequence
gaattcctcatgtcctggaatcagactgacagaggccacagggcatgatt
ttgatgctttactgacctctatagatattcattgatagtgataaatatga
ctgatgttatgtactactataaaaataattattttgttgccttggctgag
gaagacttctcacttgcaattgcattcagagtcagggcactgctggtaca
catagatactggatgtttgtcaaaataacaaggttcctgttatttgattt
tcctttgacctgatgcatgttgagttaacctttcagaacagaaagggaaa
tatgaaaacaaaacaaagacatttgcattgcaggtgccttggatacatga
atgaaatagtaagcaccagagaaggccagattcaccagtctatctgccac
agtaaaatcagttggaaaccaggatgcattcctgagacagcagacaaatg
caaatgataagcaggagcctcccttccttacagcctcacacaaatgtaca
gatgtataatctcatctattcttaatgccaccagcattgcaatataccaa
aagctaattagaaacagtccgtttcatcttggctttatagtcattgtata
aataaaacattatctctacagactcactttaatagctcacaaatataaat
aaaaaggatatcttgacctagacatcccaatattaaagcctgaaaataat
gaactacgtcatagtgatttatcaagaaagatcgttgattgaataatact
tggaaaactagtgcttagtccgtaaaaattcttcttcatataaatttggc
tcagtaagcctgaaaggttctaaggatgatataaattccaagttcttcaa
gagctccagactttaggtaatgtaaatgagcagacagtggactgtgaacc
ttcagagagtgcatttcctacagcatgcgcgtgcgcgcacacacacacac
acacacacacacacacacacatatacatatatattccaacctacttgctg
ccattcgtattaattgctttctgaatttgcctatatgcctcctctctcct
ctcctctttaatttttgatgactggcaatcttgctccatccttggaagga
tcaacctcatattttactttctgtgtggagttctctctccaacttgtaca
aaagcaatat
gaattccacattgcagaacaatgttaacggatgcatgatttatgtgctcc
tgccctcctcgctccagaaggcagaacacagtgttctgtgaacagcaaaa
aatactcccactgactggctcacacactctcccctgaaaggactgggctt
acaatctggcgcaggcaaggaagtgctgactggcctttggcacctgcaca
actcttggctcacacactgggcctggctgttagaaacaaacataatagca
gacaccttggagctgcccctccaagatatactgcttcagcgcaagcactc
tgtctaaccatagttcagttctttcctgtagtggatgttgaatagaagct
tttctggtgcctttataagtctgttcaaagattctaaggattggagaata
cagactcattcatttttcattttagcttctcttgggatatgaatgttagg
agcaagaagaaagaatgaaagaacatacagagagaataattcatgaagtg
accaaatgctacctataagataagaaggaagaacttggcaaaacagaact
atgtggaaggttgagggggccagtctgggacgtgggcagcagcctgggac
agttcttcattccttcatttgtttacctcctatttatttacttaaataag
aaatgttgctctgaccattggaaaaaaagttggcacttcaattcagtcat
aaagaaagcaccacacttgactgcattagaatccttttgtgaggtctaac
tagaagagaaagaaatcttctcagacacgataactgagcttaaaatcaag
gactctccaagtcataaaatttagcatttctttctcctttgagttgtagt
tgtctgacatttaacagaaatacaaggacctgatctcacaatattgatat
tgcaaaagttctgtttttggtattcatctcccaccccacccaccccacag
aactttgtcattattttcaattctgaagtgcatggtcattttgaaataat
aatcataattttattttaatttggagtaaataaaaggagaatgttgtaac
tacatatacattgaggaacttggagactgcataaaatgacaataatgatt
ctgaaaaagccaaggctgaaattatgttaataattccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41590113_41591267
seq2: B6Ng01-087I22.b_41_1200

seq1  GAATTCCTCATGTCCTGGAATCAGACTGACAGAGGCCACAGGGCATGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATGTCCTGGAATCAGACTGACAGAGGCCACAGGGCATGATT  50

seq1  TTGATGCTTTACTGACCTCTATAGATATTCATTGATAGTGATAAATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTTTACTGACCTCTATAGATATTCATTGATAGTGATAAATATGA  100

seq1  CTGATGTTATGTACTACTATAAAAATAATTATTTTGTTGCCTTGGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTATGTACTACTATAAAAATAATTATTTTGTTGCCTTGGCTGAG  150

seq1  GAAGACTTCTCACTTGCAATTGCATTCAGAGTCAGGGCACTGCTGGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTCTCACTTGCAATTGCATTCAGAGTCAGGGCACTGCTGGTACA  200

seq1  CATAGATACTGGATGTTTGTCAAAATAACAAGGTTCCTGTTATTTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATACTGGATGTTTGTCAAAATAACAAGGTTCCTGTTATTTGATTT  250

seq1  TCCTTTGACCTGATGCATGTTGAGTTAACCTTTCAGAACAGAAAGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGACCTGATGCATGTTGAGTTAACCTTTCAGAACAGAAAGGGAAA  300

seq1  TATGAAAACAAAACAAAGACATTTGCATTGCAGGTGCCTTGGATACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACAAAACAAAGACATTTGCATTGCAGGTGCCTTGGATACATGA  350

seq1  ATGAAATAGTAAGCACCAGAGAAGGCCAGATTCACCAGTCTATCTGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGTAAGCACCAGAGAAGGCCAGATTCACCAGTCTATCTGCCAC  400

seq1  AGTAAAATCAGTTGGAAACCAGGATGCATTCCTGAGACAGCAGACAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATCAGTTGGAAACCAGGATGCATTCCTGAGACAGCAGACAAATG  450

seq1  CAAATGATAAGCAGGAGCCTCCCTTCCTTACAGCCTCACACAAATGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATAAGCAGGAGCCTCCCTTCCTTACAGCCTCACACAAATGTACA  500

seq1  GATGTATAATCTCATCTATTCTTAATGCCACCAGCATTGCAATATACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAATCTCATCTATTCTTAATGCCACCAGCATTGCAATATACCAA  550

seq1  AAGCTAATTAGAAACAGTCCGTTTCATCTTGGCTTTATAGTCATTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATTAGAAACAGTCCGTTTCATCTTGGCTTTATAGTCATTGTATA  600

seq1  AATAAAACATTATCTCTACAGACTCACTTTAATAGCTCACAAATATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACATTATCTCTACAGACTCACTTTAATAGCTCACAAATATAAAT  650

seq1  AAAAAGGATATCTTGACCTAGACATCCCAATATTAAAGCCTGAAAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGATATCTTGACCTAGACATCCCAATATTAAAGCCTGAAAATAAT  700

seq1  GAACTACGTCATAGTGATTTATCAAGAAAGATCGTTGATTGAATAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACGTCATAGTGATTTATCAAGAAAGATCGTTGATTGAATAATACT  750

seq1  TGGAAAACTAGTGCTTAGTCCGTAAAAATTCTTCTTCATATAAATTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTAGTGCTTAGTCCGTAAAAATTCTTCTTCATATAAATTTGGC  800

seq1  TCAGTAAGCCTGAAAGGTTCTAAGGATGATATAAATTCCAAGTTCTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGCCTGAAAGGTTCTAAGGATGATATAAATTCCAAGTTCTTCAA  850

seq1  GAGCTCCAGACTTTAGGTAATGTAAATGAGCAGACAGTGGACTGTGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGACTTTAGGTAATGTAAATGAGCAGACAGTGGACTGTGAACC  900

seq1  TTCAGAGAGTGCATTTCCTACAGCATGCGCGTGCGCGCACACACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGTGCATTTCCTACAGCATGCGCGTGCGCGCACACACACACAC  950

seq1  ACACACACACACACACACACATATACATATATATTCCAACCTACTTGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATATACATATATATTCCAACCTACTTGCTG  1000

seq1  CCATTCGTATTAATTGCTTTCTGAAATTTGCTTATATGCCT-CTCTCT-C  1048
      ||||||||||||||||||||||| ||||||| ||||||||| |||||| |
seq2  CCATTCGTATTAATTGCTTTCTG-AATTTGCCTATATGCCTCCTCTCTCC  1049

seq1  TCT-CTCTTTATTTTTTGATGAACTGGCAATCTTGCTCCATCCTT-GAAG  1096
      ||| ||||||| ||||||||| ||||||||||||||||||||||| ||||
seq2  TCTCCTCTTTAATTTTTGATG-ACTGGCAATCTTGCTCCATCCTTGGAAG  1098

seq1  GATCAA-CTCATATTTTACTTTCTGTGT-GAGTTCTCTC-CCAACTTGTA  1143
      |||||| ||||||||||||||||||||| |||||||||| ||||||||||
seq2  GATCAACCTCATATTTTACTTTCTGTGTGGAGTTCTCTCTCCAACTTGTA  1148

seq1  CAAAAGCAATAT  1155
      ||||||||||||
seq2  CAAAAGCAATAT  1160

seq1: chr16_41744339_41745490
seq2: B6Ng01-087I22.g_64_1202 (reverse)

seq1  GTGG-ATTA-TAACATAATTTTCCCAGCCCCTGGGCTTCTCAGAATCATT  48
      |||| |||| |||||||||||   ||| || |||  || |||||||||||
seq2  GTGGAATTATTAACATAATTT---CAG-CCTTGGCTTTTTCAGAATCATT  46

seq1  ATTGTCATTTTTATGCGGTCTTCAAGTTTCCTCAATGTATATTGTAGTTA  98
      ||||||| |||||||| |||| |||| |||||||||||||| ||||||||
seq2  ATTGTCA-TTTTATGCAGTCTCCAAG-TTCCTCAATGTATA-TGTAGTTA  93

seq1  CAACATTCTACCTTTTATTTACCTCCAAATTAAAATAAAATTATGAATTA  148
      ||||||||| ||||||||||| ||||||||||||||||||||||| ||||
seq2  CAACATTCT-CCTTTTATTTA-CTCCAAATTAAAATAAAATTATG-ATTA  140

seq1  TTATTTCAAAATGACCATTGCACTTCAGAATTGAAAATAATGACAAAGTT  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTATTTCAAAATGACCA-TGCACTTCAGAATTGAAAATAATGACAAAGTT  189

seq1  CTGTGGGGGTGGGGTGGGGGTGGGAGATGAATAACCAAAAACAGAACTTT  248
      |||| ||||||||   |||||||||||||||| |||||||||||||||||
seq2  CTGT-GGGGTGGG--TGGGGTGGGAGATGAAT-ACCAAAAACAGAACTTT  235

seq1  TGCAATATCAATATTGTGAGATCAGGTCCTTGTATTTCTGTTAAATGTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATCAATATTGTGAGATCAGGTCCTTGTATTTCTGTTAAATGTCA  285

seq1  GACAACTACAACTCAAAGGAGAAAGAAATGCTAAATTTTATGACTTGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTACAACTCAAAGGAGAAAGAAATGCTAAATTTTATGACTTGGAG  335

seq1  AGTCCTTGATTTTAAGCTCAGTTATCGTGTCTGAGAAGATTTCTTTCTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGATTTTAAGCTCAGTTATCGTGTCTGAGAAGATTTCTTTCTCT  385

seq1  TCTAGTTAGACCTCACAAAAGGATTCTAATGCAGTCAAGTGTGGTGCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTAGACCTCACAAAAGGATTCTAATGCAGTCAAGTGTGGTGCTTT  435

seq1  CTTTATGACTGAATTGAAGTGCCAACTTTTTTTCCAATGGTCAGAGCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGACTGAATTGAAGTGCCAACTTTTTTTCCAATGGTCAGAGCAAC  485

seq1  ATTTCTTATTTAAGTAAATAAATAGGAGGTAAACAAATGAAGGAATGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATTTAAGTAAATAAATAGGAGGTAAACAAATGAAGGAATGAAG  535

seq1  AACTGTCCCAGGCTGCTGCCCACGTCCCAGACTGGCCCCCTCAACCTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCCAGGCTGCTGCCCACGTCCCAGACTGGCCCCCTCAACCTTCC  585

seq1  ACATAGTTCTGTTTTGCCAAGTTCTTCCTTCTTATCTTATAGGTAGCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTCTGTTTTGCCAAGTTCTTCCTTCTTATCTTATAGGTAGCATT  635

seq1  TGGTCACTTCATGAATTATTCTCTCTGTATGTTCTTTCATTCTTTCTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTTCATGAATTATTCTCTCTGTATGTTCTTTCATTCTTTCTTCT  685

seq1  TGCTCCTAACATTCATATCCCAAGAGAAGCTAAAATGAAAAATGAATGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTAACATTCATATCCCAAGAGAAGCTAAAATGAAAAATGAATGAG  735

seq1  TCTGTATTCTCCAATCCTTAGAATCTTTGAACAGACTTATAAAGGCACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTCTCCAATCCTTAGAATCTTTGAACAGACTTATAAAGGCACCA  785

seq1  GAAAAGCTTCTATTCAACATCCACTACAGGAAAGAACTGAACTATGGTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTTCTATTCAACATCCACTACAGGAAAGAACTGAACTATGGTTA  835

seq1  GACAGAGTGCTTGCGCTGAAGCAGTATATCTTGGAGGGGCAGCTCCAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTGCTTGCGCTGAAGCAGTATATCTTGGAGGGGCAGCTCCAAGG  885

seq1  TGTCTGCTATTATGTTTGTTTCTAACAGCCAGGCCCAGTGTGTGAGCCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTATTATGTTTGTTTCTAACAGCCAGGCCCAGTGTGTGAGCCAA  935

seq1  GAGTTGTGCAGGTGCCAAAGGCCAGTCAGCACTTCCTTGCCTGCGCCAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTGCAGGTGCCAAAGGCCAGTCAGCACTTCCTTGCCTGCGCCAGA  985

seq1  TTGTAAGCCCAGTCCTTTCAGGGGAGAGTGTGTGAGCCAGTCAGTGGGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCCCAGTCCTTTCAGGGGAGAGTGTGTGAGCCAGTCAGTGGGAG  1035

seq1  TATTTTTTGCTGTTCACAGAACACTGTGTTCTGCCTTCTGGAGCGAGGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGCTGTTCACAGAACACTGTGTTCTGCCTTCTGGAGCGAGGAG  1085

seq1  GGCAGGAGCACATAAATCATGCATCCGTTAACATTGTTCTGCAATGTGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGCACATAAATCATGCATCCGTTAACATTGTTCTGCAATGTGGA  1135

seq1  ATTC  1152
      ||||
seq2  ATTC  1139