BAC Information

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BAC

Clone NameB6Ng01-088E03
Chromosome16 (Build37)
Map Location 40,642,400 - 40,642,792
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088E03.bB6Ng01-088E03.g
ACCDH901164DH901165
length1,2671,052
definitionDH901164|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E03, 5' end.DH901165|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagtttgaaacccactttttaatgaggttatttgaatt
tctggagtctagcttcttgagctctttgtatatattagatattactcccc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggcctt
tttgtcttattcacagtgtcttttgccttacagaagctttgccattttat
gaggtcccatttgtcaatttttgatcttacatcacaagccattactcttc
tatttaggaatttttcccatgggccaataccttcgaggcttttctccact
ttctcatctattaattacagtgtctctggtctttgatccacttagacttg
agctttgtacaaagagataagaatgaatcaatttgcattcttctacataa
taactgccagttgtgccagcaccatttattgaaaatgctcttatttttcc
actggatagtcttactcccttgtcaaatatcaagtgaccataggtgtgtg
gatacatttctgggtcttcaattctattccattgatctacctgtctgtca
ctggaccagtaccatacagtttttatcacaattgctctgtagtacagctt
aatgtcaggcatggtgattccaacagagattcttttattgttgagaatag
tttttgctatcctaggttttttatttttccagatgaatttaaaaattgcc
ctttctatctcagtgaagaattgaataggaattttgatggggattgcatt
gaatctgtagattgcttttggcaggatagccatttttactatattaatcc
tgccaatacatgagcatgggagatctttctatcttctgagatcctcttca
atttctttcttcagagacttgatcttcttatcatacagatctttcacctc
ctttagtagggtcacaccaaggtacttttatattactttgcaactattgt
gaaggtgttgtttccctaatttctttctcatctgattatcatttgtatag
agaaaggccatgattatttgagttaattttatatccagctactgcattca
gctgtttatcaggttaggagttctctggggaatttttaagggtcacttat
atatactatcatattcatctgcaaaagggattttggacctcttctttgaa
tttgaatcccatgaactccttttattgtcaattgcctgccaagactccag
gactaattgagggaagtaaagggccctgtccagtcgattttaggggatgc
tctctcgtctgctgcct
gaattcttgagggccagcagcaagaatggaaacaggcaactctgggaggt
tggaggtggtgggaccctctagaatgcaccagagaccttggaggtgagaa
gctctcaggactcaaggggagggacattgaatgaaatgccctacagtggg
gagaaggaacttgtagagtccacctcccatcgagggacaggacaccaagt
ggagggatgggatggccatgccacagtcaaaatctctgacctagaactgt
tcctttctgaaggaactgctgggacaaaaatggaaaaaagcctgagagaa
aggaggtccagtgacaagtgaaaactgggatcaagaacaaggagaggtcc
ctgggcctgacactattactgacgctgtggtgtactttcagacagaagcc
aagcatggttgccctctgcaagtcctaacatgcagatcaaagagtcagat
acagatactagcacccaatcaatggagtgaagccagggactcccatggtc
caatttaagaaaagctgggagaagctgaagaggagggtagaccggtagga
agaccagtaattttttttttaatttttattttttactataatcttagcac
catattaataaacattggtagtgaagtaacataattttaataacaatggt
tttgtagcttactaagattttaaatttttcacaactaaagctgaaataaa
ttacctatcttatcatgcagctatatcaaacattgtatatttcaatgtct
aaggatgttcagagatgacccttaggcatcatgatttattttacttaggg
ttctaccacctaccacgcagctccactgctcctgacctgcatggttcttc
atatgatcttgtgttctaaagcttgtcaaagaatcttagtgtctaatgtg
aattcatttctttttatagatgttttcttcatttacatttcaatgctatc
taaagtaccctaaagctcccccaccctgctccctacacacccagtccact
cttgacctcgcattcccaggtatttgttcttgatactggggcatataaag
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40642400_40642792
seq2: B6Ng01-088E03.g_624_1118 (reverse)

seq1  AACTTTATATGCCCCAGTA-CAGGGA--------GGGGAACGCCAGGGCC  41
      ||||||||||||||||||| || | |         ||||| || ||| | 
seq2  AACTTTATATGCCCCAGTATCAAGAACAAATACCTGGGAATGCGAGGTC-  49

seq1  AAAAAGTGGGAGTGGGTGGGTAGCGGAG-TGGGTGGAG--GGTATGGGGG  88
       || ||| ||| |||||| |||| ||||  |||||| |  | | | ||| 
seq2  -AAGAGT-GGACTGGGTGTGTAG-GGAGCAGGGTGGGGGAGCTTTAGGGT  96

seq1  ACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCT---AATAA  135
      |||||   ||||||||| ||||||||||||| ||||| | ||   || | 
seq2  ACTTT--AGATAGCATT-GAAATGTAAATGAAGAAAACATCTATAAAAAG  143

seq1  AAATTATTT----TTA---AAAAAGAGT--------AAATCTACGCCCCC  170
      |||| | ||    |||   |  |||| |        |  | ||   | | 
seq2  AAATGAATTCACATTAGACACTAAGATTCTTTGACAAGCTTTAGAACACA  193

seq1  ACATC--------AACCCT-CAG--CTGGA-CAAT---------------  193
      | |||        |||| | |||  | ||| || |               
seq2  AGATCATATGAAGAACCATGCAGGTCAGGAGCAGTGGAGCTGCGTGGTAG  243

seq1  ----CACACTCATAACTAAACT-TATCTGCAATGAAGATTAAAGAGAA--  236
           | |  | ||| |||| |  |||    |||| |  ||| |   |  
seq2  GTGGTAGAACCCTAAGTAAAATAAATC----ATGATGCCTAAGGGTCATC  289

seq1  ---AAACTGTCTT----CTTAAAAT------CCTTTAATAAAACTACCTT  273
          |||   |||     || ||||        ||| ||| | || | | 
seq2  TCTGAACATCCTTAGACATTGAAATATACAATGTTTGATATAGCTGCATG  339

seq1  TTAAAATAAAAAAAGAA----------AGAAAAGAAAAGGCAAGAATAAC  313
       ||| |||   ||   |          ||    |||||    | |||   
seq2  ATAAGATAGGTAATTTATTTCAGCTTTAGTTGTGAAAAATTTAAAATCTT  389

seq1  AACAATCAGTACAGGA--ATCAGTATCCAAGACAT---------CTTCCC  352
      |  || |  ||||  |  ||   |||  ||   ||         || || 
seq2  AGTAAGC--TACAAAACCATTGTTATTAAAATTATGTTACTTCACTACCA  437

seq1  ATG-------ATATG-----AACTGGATAG-----ATGGGAAATTAAAAA  385
      |||       |||||     ||    ||||     |    ||||||||||
seq2  ATGTTTATTAATATGGTGCTAAGATTATAGTAAAAAATAAAAATTAAAAA  487

seq1  AAAAATTA  393
      ||||||||
seq2  AAAAATTA  495