BAC Information

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BAC

Clone NameB6Ng01-088I17
Chromosome2 (Build37)16 (Build37)
Map Location 142,776,468 - 142,777,69874,820,690 - 74,821,027
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I17.bB6Ng01-088I17.g
ACCDH901367DH901368
length1,061338
definitionDH901367|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I17, 5' end.DH901368|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,468 - 142,777,698)(74,820,690 - 74,821,027)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagtttttttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgtcttttgccttgcagaagctttggagtttc
atgaggtcccatttgtcaattctcaatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagataagtatggattgattgg
cattcttctacacgataacaaccagttgtgccagcaccaattgttgaaaa
tgccgtctttcttctactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttctctgtcagtataccagtaccatgcagtttttatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctaccctaggttttttgttattccagat
gaatttgcagattgctctttctaattcgttgaagaatttgagttggaatt
ttgatggggattgcattgaatctaggggctgaggtggcacatgggggggg
agtgctagtgtgcatccctcctgcaaaagagaacaaccacattttgaatc
tgggctacaatttctcctttagcttcatttaactggatgagaaaaaaagt
aagtagcaaattaagttcaagccaattcttgtgtaggtgatgaaagtaca
aactcaaaactttctggctctgggttcatcctgctatgctattcacagtt
tctgggactgttcttgctccatgaagtctatctgcttcttttggatctgt
agaatttaaat
tttccagtgaatggctgcaatggagttgttcctgaccaggacagatgaaa
tgttgctcatagagtgtcatggatgtcacagggcaaacagcttcagagaa
actgggcagagttggttataaagcagtgaactatcagagagcagacatca
agaaccagtactgaatcttccccctctataaagcttttgtagtttttatc
atagctgaactttaaatatatcctgagatctaggtactaagtatgatcac
agatcttatcctaagaaagaggaaaggttagattggggtaaagcattgag
gtgaatttgtaggtatttggtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776468_142777698
seq2: B6Ng01-088I17.b_46_818 (reverse)

seq1  AGATTCAATGCAATCCCCATCAAAATTCCAACTC-AATTCTTCAACGAAT  49
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATTCAATGCAATCCCCATCAAAATTCCAACTCAAATTCTTCAACGAAT  50

seq1  TAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATA  99
      ||||| ||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGGTA  100

seq1  GCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCC  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCC  150

seq1  TGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACT  200

seq1  GGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAA  249
      ||||||  |||||| |||||||||||||||||||||||||||||||||||
seq2  GGTATACTGACAGAGAAGTAGACCAATGGAATAGAATTGAAGACCCAGAA  250

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  300

seq1  CATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  349
      |||||||  |||||||||| ||||||||||||||||||||||||||||||
seq2  CATCCAGTAGAAGAAAGACGGCATTTTCAACAATTGGTGCTGGCACAACT  350

seq1  GGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGT  399
      |||||||||| ||||||||||||  |||| ||||||||||||||||||||
seq2  GGTTGTTATCGTGTAGAAGAATGCCAATCAATCCATACTTATCTCCTTGT  400

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  450

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  500

seq1  CAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  549
      ||||||| ||||||||||| |||||||||||||||||||||||||||| |
seq2  CAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATTG  550

seq1  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  599
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  AGAATTGACAAATGGGACCTCATGAAACTCCAAAGCTTCTGCAAGGCAAA  600

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  650

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT-AAAGA  698
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAAAA  700

seq1  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGG  750

seq1  GCTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTG  798
      ||||| ||            ||| |||||    |||              
seq2  GCTCAGAA----------CTGAACAAAGA----ATTC-------------  773

seq1  CTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACT  848
                                                        
seq2  --------------------------------------------------  773

seq1  TATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATA  898
                                                        
seq2  --------------------------------------------------  773

seq1  AAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGA  948
                                                        
seq2  --------------------------------------------------  773

seq1  AGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTG  998
                                                        
seq2  --------------------------------------------------  773

seq1  CTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTC  1048
                                                        
seq2  --------------------------------------------------  773

seq1  TGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTG  1098
                                                        
seq2  --------------------------------------------------  773

seq1  GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACA  1148
                                                        
seq2  --------------------------------------------------  773

seq1  TATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATT  1198
                                                        
seq2  --------------------------------------------------  773

seq1  AAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1231
                                       
seq2  ---------------------------------  773

seq1: chr16_74820690_74821027
seq2: B6Ng01-088I17.g_74_411

seq1  TTTCCAGTGAATGGCTGCAATGGAGTTGTTCCTGACCAGGACAGATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGAATGGCTGCAATGGAGTTGTTCCTGACCAGGACAGATGAAA  50

seq1  TGTTGCTCATAGAGTGTCATGGATGTCACAGGGCAAACAGCTTCAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCATAGAGTGTCATGGATGTCACAGGGCAAACAGCTTCAGAGAA  100

seq1  ACTGGGCAGAGTTGGTTATAAAGCAGTGAACTATCAGAGAGCAGACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCAGAGTTGGTTATAAAGCAGTGAACTATCAGAGAGCAGACATCA  150

seq1  AGAACCAGTACTGAATCTTCCCCCTCTATAAAGCTTTTGTAGTTTTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGTACTGAATCTTCCCCCTCTATAAAGCTTTTGTAGTTTTTATC  200

seq1  ATAGCTGAACTTTAAATATATCCTGAGATCTAGGTACTAAGTATGATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAACTTTAAATATATCCTGAGATCTAGGTACTAAGTATGATCAC  250

seq1  AGATCTTATCCTAAGAAAGAGGAAAGGTTAGATTGGGGTAAAGCATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTATCCTAAGAAAGAGGAAAGGTTAGATTGGGGTAAAGCATTGAG  300

seq1  GTGAATTTGTAGGTATTTGGTGTGTGTGTGTGTGTGTG  338
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTGTAGGTATTTGGTGTGTGTGTGTGTGTGTG  338