BAC Information

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BAC

Clone NameB6Ng01-093B01
Chromosome16 (Build37)
Map Location 40,418,799 - 40,549,590
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093B01.bB6Ng01-093B01.g
ACCDH904654DH904655
length1,1431,084
definitionDH904654|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B01, 5' end.DH904655|Mus musculus domesticus DNA, BAC clone: B6Ng01-093B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,418,799 - 40,419,946)(40,548,505 - 40,549,590)
sequence
gaattcatgcacactagcttcagctccagcttgaacagaaagaaggctga
aggtcaggtcagacaagtcttaatggtgctgactcatgtgagggtgagat
ctgctctttcccctctttctctataatgaacaacagagaagaaaagcctc
tctgagctaacgtttcattgaagagacggagtttgcccagtaaaacaggt
catgttattctttcatagactggttattttccatcatatatggcagtgac
atcatgacaggcagcacccccaaccccaactccttttacttcttctttga
ctttcaaatccatcataacaacatcttgataattagaattattagtattc
ctcacaaccatatttcttgattatttatgttggttgggataatagaattt
cccctcacaaattctcctatatttagcaaagctcggaagcagaattttcc
tatgatgagaactcagttctcccttttggggcaagaattccaagctattt
ttgagcatagatgagaaaaagtgaattcctaaatcaacacctgtcagaga
agcttctcttccagaacttttttggtaagctattttaatcattatcacta
tgcttaattaatgtcactatttagcctgagataatttaagtgttcccttc
ttaagtctcccactgaactttcttctggaagtctctagatagcttctgga
cagattatattgttatctacagcagtacactgcaattcttcagctattat
cattgatttaatattttattcttaataatttagtcatctacctgtatgtc
tatgaagttaaaaaccagatatatatttctggaatctaacacaaagcctt
gctcaaatatatgcctaatgaaaaattattataggttagggtgtaactca
actgctaatcttcttgtataacatgcaccaaagcctttttttgatcccaa
gtaacatatatagacactacgcatgaagtacacaatgataatctaagatc
ctcaaataaatccaatccttttaatttctggaacattggtttttaagggt
ttgtcatgaaagttgccctagatttcatttaagtttatcactcaattata
gtgggattattatacctttactccctagggataaattttattc
gaattcatcagggcaaataaatatcatgcccgaacagctgggaagcatga
gcaagaatacaaaactgctggtatattatctatacccccccatactgaga
gctgtaacttaataagtggacgattacagaggttatgagaaaagcagaaa
tgattacagtgaagtttaaagaacacctgatatgaaagataacttgattt
ctcacagatgcctcaatttcatggaaggctgtttagagtgttcattagga
aggtgggctccaatgacagatgtccaagcaacatacaatttcatatatgt
caattatgagctgtgggtctgcagcaaacaagctacattggctgagtctc
ctgctgtctttgtttttttaaatttctctttctttccttctttcctttcc
ttttttcttttcttttctcttctttcctttctttctttccttccttattt
ccttaatttatttatttccttccttccttccttcttcccatccttccttc
ttcttttctttttctttccttcctttacaagagggtttttttctgtgtat
cactggctgtcctggaactagccctgtagaacaagctagcttcaggttca
cagaggttctcctgactttgcctatcacttgctagaattaaaagtgatac
cactaccacctggaaaatctcactttctttatccatacataagagggcga
tgttaattgctttcaagcatacacagaagaaaacccacaacttccttctt
atcacttctcatggtttccctccactgatggtagttagtagacctcaaat
attgatataaatgataatgtcaatggtttggtagttctgaatcattgata
ttattgttttactcggcccaaacattactgttttactcacgatagaataa
cagagcacgtaatgtgccgccttcaagcattggttataaagatataagtt
tgagagacttctacactgtaaatgaaatatttcttctatccagagcagtg
attatgggaataaattatgggtggacaaatttagtagggtttactaaggt
gctcctgtaccaccaaaaaataatcttaagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40418799_40419946
seq2: B6Ng01-093B01.b_42_1184

seq1  GAATTCATGCACACTAGCTTCAGCTCCAGCTTGAACAGAAAGAAGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCACACTAGCTTCAGCTCCAGCTTGAACAGAAAGAAGGCTGA  50

seq1  AGGTCAGGTCAGACAAGTCTTAATGGTGCTGACTCATGTGAGGGTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGTCAGACAAGTCTTAATGGTGCTGACTCATGTGAGGGTGAGAT  100

seq1  CTGCTCTTTCCCCTCTTTCTCTATAATGAACAACAGAGAAGAAAAGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTCCCCTCTTTCTCTATAATGAACAACAGAGAAGAAAAGCCTC  150

seq1  TCTGAGCTAACGTTTCATTGAAGAGACGGAGTTTGCCCAGTAAAACAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTAACGTTTCATTGAAGAGACGGAGTTTGCCCAGTAAAACAGGT  200

seq1  CATGTTATTCTTTCATAGACTGGTTATTTTCCATCATATATGGCAGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTCTTTCATAGACTGGTTATTTTCCATCATATATGGCAGTGAC  250

seq1  ATCATGACAGGCAGCACCCCCAACCCCAACTCCTTTTACTTCTTCTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACAGGCAGCACCCCCAACCCCAACTCCTTTTACTTCTTCTTTGA  300

seq1  CTTTCAAATCCATCATAACAACATCTTGATAATTAGAATTATTAGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATCCATCATAACAACATCTTGATAATTAGAATTATTAGTATTC  350

seq1  CTCACAACCATATTTCTTGATTATTTATGTTGGTTGGGATAATAGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCATATTTCTTGATTATTTATGTTGGTTGGGATAATAGAATTT  400

seq1  CCCCTCACAAATTCTCCTATATTTAGCAAAGCTCGGAAGCAGAATTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCACAAATTCTCCTATATTTAGCAAAGCTCGGAAGCAGAATTTTCC  450

seq1  TATGATGAGAACTCAGTTCTCCCTTTTGGGGCAAGAATTCCAAGCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAGAACTCAGTTCTCCCTTTTGGGGCAAGAATTCCAAGCTATTT  500

seq1  TTGAGCATAGATGAGAAAAAGTGAATTCCTAAATCAACACCTGTCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATAGATGAGAAAAAGTGAATTCCTAAATCAACACCTGTCAGAGA  550

seq1  AGCTTCTCTTCCAGAACTTTTTTGGTAAGCTATTTTAATCATTATCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTTCCAGAACTTTTTTGGTAAGCTATTTTAATCATTATCACTA  600

seq1  TGCTTAATTAATGTCACTATTTAGCCTGAGATAATTTAAGTGTTCCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATTAATGTCACTATTTAGCCTGAGATAATTTAAGTGTTCCCTTC  650

seq1  TTAAGTCTCCCACTGAACTTTCTTCTGGAAGTCTCTAGATAGCTTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTCCCACTGAACTTTCTTCTGGAAGTCTCTAGATAGCTTCTGGA  700

seq1  CAGATTATATTGTTATCTACAGCAGTACACTGCAATTCTTCAGCTATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATATTGTTATCTACAGCAGTACACTGCAATTCTTCAGCTATTAT  750

seq1  CATTGATTTAATATTTTATTCTTAATAATTTAGTCATCTACCTGTATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTAATATTTTATTCTTAATAATTTAGTCATCTACCTGTATGTC  800

seq1  TATGAAGTTAAAAACCAGATATATATTTCTGGAATCTAACACAAAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTTAAAAACCAGATATATATTTCTGGAATCTAACACAAAGCCTT  850

seq1  GCTCAAATATATGCCTAATGAAAAATTATTATAGGTTAGGGTGTAACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATATATGCCTAATGAAAAATTATTATAGGTTAGGGTGTAACTCA  900

seq1  ACTGCTAATCTTCTTGTATAACATGCACCAAAGCCTTTTTTTGATCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAATCTTCTTGTATAACATGCACCAAAGCCTTTTTTTGATCCCAA  950

seq1  GTAACATATATAAGACACTACGCATGAAGGTACACAATGATAATCTAAGA  1000
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  GTAACATATAT-AGACACTACGCATGAA-GTACACAATGATAATCTAAGA  998

seq1  TCTCAAAATAAATCCAATCCTTTTAATATCTGG-ACATTGGTTTATAAGG  1049
      ||   |||||||||||||||||||||| ||||| |||||||||| |||||
seq2  TCCTCAAATAAATCCAATCCTTTTAATTTCTGGAACATTGGTTTTTAAGG  1048

seq1  GTCTGTCATGAAAGTTGCCTTAGATTTCATTAAAGTTATATTCACTCAAT  1099
      || |||||||||||||||| ||||||||||| ||||| || |||||||||
seq2  GTTTGTCATGAAAGTTGCCCTAGATTTCATTTAAGTT-TA-TCACTCAAT  1096

seq1  TATAGT-GGATTAATTTATA-CTTTACT-CCTAGTGGATTAAATTTATAT  1146
      |||||| ||||||  ||||| ||||||| ||||| ||| ||||||| |||
seq2  TATAGTGGGATTA--TTATACCTTTACTCCCTAG-GGA-TAAATTT-TAT  1141

seq1  TC  1148
      ||
seq2  TC  1143

seq1: chr16_40548505_40549590
seq2: B6Ng01-093B01.g_69_1152 (reverse)

seq1  GCAGCTTAAGTATTATTTTTTGTGTGTACAGGAAGACCATATGTAAACCC  50
      |||||||||| |||||||||||   ||||||||  ||| || ||||||||
seq2  GCAGCTTAAG-ATTATTTTTTGGTGGTACAGGAGCACCTTA-GTAAACCC  48

seq1  TACTAAATTTGT-CAACCATAAATTATT-CCATAATCACTGCTCTGAATA  98
      |||||||||||| || |||||| ||||| ||||||||||||||||| |||
seq2  TACTAAATTTGTCCACCCATAATTTATTCCCATAATCACTGCTCTGGATA  98

seq1  GAAG-AATATTTCATTTACAGTGTAGAAGTCTCTCAAAACTTATATCTTT  147
      |||| |||||||||||||||||||||||||||||| ||||||||||| ||
seq2  GAAGAAATATTTCATTTACAGTGTAGAAGTCTCTC-AAACTTATATC-TT  146

seq1  TATAACCAATGCTTGAAGGCGGCACCTTACGTGGCTTCTGTTATTCTATC  197
      ||||||||||||||||||||||||| |||||||   ||||||||||||||
seq2  TATAACCAATGCTTGAAGGCGGCACATTACGTG--CTCTGTTATTCTATC  194

seq1  GTGAGTAAAACAGTAATGTTTGGGCCGAGTAAAACAATAATATC-ATGAT  246
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGAGTAAAACAGTAATGTTTGGGCCGAGTAAAACAATAATATCAATGAT  244

seq1  TCAGAACTACCAAACCATTGACATTATCATTTATATCAATATTTGAGGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTACCAAACCATTGACATTATCATTTATATCAATATTTGAGGTC  294

seq1  TACTAACTACCATCAGTGGAGGGAAACCATGAGAAGTGATAAGAAGGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTACCATCAGTGGAGGGAAACCATGAGAAGTGATAAGAAGGAAG  344

seq1  TTGTGGGTTTTCTTCTGTGTATGCTTGAAAGCAATTAACATCGCCCTCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGTTTTCTTCTGTGTATGCTTGAAAGCAATTAACATCGCCCTCTT  394

seq1  ATGTATGGATAAAGAAAGTGAGATTTTCCAGGTGGTAGTGGTATCACTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGATAAAGAAAGTGAGATTTTCCAGGTGGTAGTGGTATCACTTT  444

seq1  TAATTCTAGCAAGTGATAGGCAAAGTCAGGAGAACCTCTGTGAACCTGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAGCAAGTGATAGGCAAAGTCAGGAGAACCTCTGTGAACCTGAA  494

seq1  GCTAGCTTGTTCTACAGGGCTAGTTCCAGGACAGCCAGTGATACACAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTGTTCTACAGGGCTAGTTCCAGGACAGCCAGTGATACACAGAA  544

seq1  AAAAACCCTCTTGTAAAGGAAGGAAAGAAAAAGAAAAGAAGAAGGAAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTCTTGTAAAGGAAGGAAAGAAAAAGAAAAGAAGAAGGAAGGA  594

seq1  TGGGAAGAAGGAAGGAAGGAAGGAAATAAATAAATTAAGGAAATAAGGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAAGGAAGGAAGGAAGGAAATAAATAAATTAAGGAAATAAGGAA  644

seq1  GGAAAGAAAGAAAGGAAAGAAGAGAAAAGAAAAGAAAAAAGGAAAGGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGAAAGGAAAGAAGAGAAAAGAAAAGAAAAAAGGAAAGGAAA  694

seq1  GAAGGAAAGAAAGAGAAATTTAAAAAAACAAAGACAGCAGGAGACTCAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGAAAGAGAAATTTAAAAAAACAAAGACAGCAGGAGACTCAGC  744

seq1  CAATGTAGCTTGTTTGCTGCAGACCCACAGCTCATAATTGACATATATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGCTTGTTTGCTGCAGACCCACAGCTCATAATTGACATATATGA  794

seq1  AATTGTATGTTGCTTGGACATCTGTCATTGGAGCCCACCTTCCTAATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATGTTGCTTGGACATCTGTCATTGGAGCCCACCTTCCTAATGAA  844

seq1  CACTCTAAACAGCCTTCCATGAAATTGAGGCATCTGTGAGAAATCAAGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAAACAGCCTTCCATGAAATTGAGGCATCTGTGAGAAATCAAGTT  894

seq1  ATCTTTCATATCAGGTGTTCTTTAAACTTCACTGTAATCATTTCTGCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCATATCAGGTGTTCTTTAAACTTCACTGTAATCATTTCTGCTTT  944

seq1  TCTCATAACCTCTGTAATCGTCCACTTATTAAGTTACAGCTCTCAGTATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAACCTCTGTAATCGTCCACTTATTAAGTTACAGCTCTCAGTATG  994

seq1  GGGGGGTATAGATAATATACCAGCAGTTTTGTATTCTTGCTCATGCTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTATAGATAATATACCAGCAGTTTTGTATTCTTGCTCATGCTTCC  1044

seq1  CAGCTGTTCGGGCATGATATTTATTTGCCCTGATGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCGGGCATGATATTTATTTGCCCTGATGAATTC  1084