BAC Information

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BAC

Clone NameB6Ng01-093N12
Chromosome16 (Build37)
Map Location 52,637,997 - 52,796,983
singlet/doubletdoublet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N12.bB6Ng01-093N12.g
ACCDH905218DH905219
length1,1301,163
definitionDH905218|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N12, 5' end.DH905219|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,795,847 - 52,796,983)(52,637,997 - 52,639,175)
sequence
gaattcactggatgggagaccacctctgctaacttaacattccaaatgtc
tcaggacagagcaatggtcttgatcatgtgctttaaagatggatccacac
agtttttatttttatgaaacatctcataacttgaaaccttagtctcttta
attctacatctcaaatgtctacacctaaccaactctacaattctgaggtg
tggtactaataggattcattcattcattcattcattcattcatttactta
ttcattcattttattattctttcaatatcacggtgtttgttgtattagtt
tatagtataaataacttaaatctgtgataatgcatgcatatataactctg
aagataatacttaagttctgccaccatcatgtgattccacacatagacaa
cacatagcccatagtaaactcaacatggataaatatcattcaccatttcc
aaatgaaaaagacaaacaggaaaggaaagtacaataaacatttctttcta
tcctacgatatccatgccctgtaaggaaaggcaaacatagccatataaca
gaaaccaaatcatcttattaacacagcaatggagtctaattaagacagtg
cacagtgttgatgtatggtgcaatgactagtgaccgatactgcctctccc
cacacaagtgtgttaattacatgttctgccactgaaagtcacattctagt
tcataagtccttaagtggttagatatatttgctaaaaggttacaacaggt
aaccatagaatatatcatgtagaataagagaattaaaaagaaaacagtaa
tatcaagacactttggcttcactgtttgtagtatccctaaccacagcaca
gctatctgcaatctatcatcacgctgattttgcctttaaaactatgcgat
tgacaaaaagaaaaaagaaacttcttgctacaagtgctcaaccatatacc
cttatttggccaccatgcataacaaaatctattataaaaataaaaatttt
acgacatttccttcaaatcagttgttctttacatcaatgtccataatttt
catattttccattcttaattatatatagaaggtaatttttgctaatttat
tgatagatctggcactatagaactgtctga
gaattcttttctctttgccccttgttgtagcatctttcctatggaatgta
tggcaaaacaaagtgatttgagtagactggtcttcaacgcagatgttgga
caatgttttgtatatatatagtttgtgtgtatatatagttttatatggtc
ttgtgagaatgaaagagagaacggtaagaagaaaattgtcatctttggaa
aatcagtgatgtcccctgtagttcttctgagatggagggctggaggactt
ggcataaggttattttatgcaccatcactgtggcatatcagcattaaaat
gatgtggaccatccattggggtaaacccacaagaagaagaggaaggtaaa
agacctaatgaagaagagctggctttgtgtcctagcagtttctaatctac
tttctttgttctcttctatcttgcagcatttctacatcacactctatgtg
gctacaatcatccatcattctttgcgtgtttgcttttcaagtctagtcag
aggtgaacgagatcgtgctcttttggcgagctgcggcactattactttta
gaaagcaggtgggaagctcagtgggaacaaaatgtcatgcagtttgaccc
caccacctcggagaagacctttagctttagacagctgtcatatatagttc
atcggaaggtagaacagacgtttaggtgatcctgctcttaaaatcagtat
ggaagcccagaatgacaacgctggaaaagttactttaacttagctttcta
cttcacacttagctctacactagtttcctatttctctatagctgcctctg
acctcttcccaatgaaattctcatgccattactacttcactcatacctgt
gtcagtatttatcactataaattgacccctttctctttctatttttgtgt
cagttaagtatactatcacatttctgaatttcccaattagaattgaggtg
cttctttttaaacttcttttcctcacatttgcataatttcccattggcta
ggacatgacttctaacagtggttttatacctttatttccattgatacttt
atactgtaccaagtataaaactactctggtagcagagagatgcttgaggc
tttcttgcttattttatataatatggagtagccaggagctacctgtgtgc
tcccaagtttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52795847_52796983
seq2: B6Ng01-093N12.b_49_1178 (reverse)

seq1  TCAGACAGTACTATAGTGCCAGAAATCCTATCAGATAAAATAGCAAAAAT  50
      ||||||||| |||||||||||||    |||||| ||||| ||||||||||
seq2  TCAGACAGTTCTATAGTGCCAGA---TCTATCA-ATAAATTAGCAAAAAT  46

seq1  TACCTTCTATATATAATGTAAGAAATGGAAAATATGAAAA-TATGGACAT  99
      ||||||||||||||||| |||| ||||||||||||||||| |||||||||
seq2  TACCTTCTATATATAAT-TAAG-AATGGAAAATATGAAAATTATGGACAT  94

seq1  TGATGTAAAGAACAAACTGATTTGAAGGAAATTGTCGTAAAATTTTTATT  149
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TGATGTAAAGAAC-AACTGATTTGAAGGAAA-TGTCGTAAAATTTTTATT  142

seq1  TTTATAATAGATTTTGTTATGCATGGTGGCCAAATAAGGGTATATGGTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAGATTTTGTTATGCATGGTGGCCAAATAAGGGTATATGGTTG  192

seq1  AGCACTTGTAGCAAGAAGTTTCTTTTTTCTTTTTGTCAATCGCATAGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGTAGCAAGAAGTTTCTTTTTTCTTTTTGTCAATCGCATAGTTT  242

seq1  TAAAGGCAAAATCAGCCTGATGATAGATTGCAGATAGCTGTGCTGTGGTT  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAGGCAAAATCAGCGTGATGATAGATTGCAGATAGCTGTGCTGTGGTT  292

seq1  AGGGATACTACAAACAGTGAAGCCAAAGTGTCTTGATATTACTGTTTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATACTACAAACAGTGAAGCCAAAGTGTCTTGATATTACTGTTTTCT  342

seq1  TTTTAATTCTCTTATTCTACATGATATATTCTATGGTTACCTGTTGTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCTCTTATTCTACATGATATATTCTATGGTTACCTGTTGTAAC  392

seq1  CTTTTAGCAAATATATCTAACCACTTAAGGACTTATGAACTAGAATGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCAAATATATCTAACCACTTAAGGACTTATGAACTAGAATGTGA  442

seq1  CTTTCAGTGGCAGAACATGTAATTAACACACTTGTGTGGGGAGAGGCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTGGCAGAACATGTAATTAACACACTTGTGTGGGGAGAGGCAGT  492

seq1  ATCGGTCACTAGTCATTGCACCATACATCAACACTGTGCACTGTCTTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTCACTAGTCATTGCACCATACATCAACACTGTGCACTGTCTTAAT  542

seq1  TAGACTCCATTGCTGTGTTAATAAGATGATTTGGTTTCTGTTATATGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCATTGCTGTGTTAATAAGATGATTTGGTTTCTGTTATATGGCT  592

seq1  ATGTTTGCCTTTCCTTACAGGGCATGGATATCGTAGGATAGAAAGAAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCCTTTCCTTACAGGGCATGGATATCGTAGGATAGAAAGAAATG  642

seq1  TTTATTGTACTTTCCTTTCCTGTTTGTCTTTTTCATTTGGAAATGGTGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTACTTTCCTTTCCTGTTTGTCTTTTTCATTTGGAAATGGTGAA  692

seq1  TGATATTTATCCATGTTGAGTTTACTATGGGCTATGTGTTGTCTATGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTATCCATGTTGAGTTTACTATGGGCTATGTGTTGTCTATGTGT  742

seq1  GGAATCACATGATGGTGGCAGAACTTAAGTATTATCTTCAGAGTTATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACATGATGGTGGCAGAACTTAAGTATTATCTTCAGAGTTATATA  792

seq1  TGCATGCATTATCACAGATTTAAGTTATTTATACTATAAACTAATACAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATTATCACAGATTTAAGTTATTTATACTATAAACTAATACAAC  842

seq1  AAACACCGTGATATTGAAAGAATAATAAAATGAATGAATAAGTAAATGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCGTGATATTGAAAGAATAATAAAATGAATGAATAAGTAAATGAA  892

seq1  TGAATGAATGAATGAATGAATGAATCCTATTAGTACCACACCTCAGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAATGAATGAATGAATCCTATTAGTACCACACCTCAGAATT  942

seq1  GTAGAGTTGGTTAGGTGTAGACATTTGAGATGTAGAATTAAAGAGACTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTGGTTAGGTGTAGACATTTGAGATGTAGAATTAAAGAGACTAA  992

seq1  GGTTTCAAGTTATGAGATGTTTCATAAAAATAAAAACTGTGTGGATCCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAGTTATGAGATGTTTCATAAAAATAAAAACTGTGTGGATCCAT  1042

seq1  CTTTAAAGCACATGATCAAGACCATTGCTCTGTCCTGAGACATTTGGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGCACATGATCAAGACCATTGCTCTGTCCTGAGACATTTGGAAT  1092

seq1  GTTAAGTTAGCAGAGGTGGTCTCCCATCCAGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTTAGCAGAGGTGGTCTCCCATCCAGTGAATTC  1130

seq1: chr16_52637997_52639175
seq2: B6Ng01-093N12.g_70_1232

seq1  GAATTCTTTTCTCTTTGCCCCTTGTTGTAGCATCTTTCCTATGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCTTTGCCCCTTGTTGTAGCATCTTTCCTATGGAATGTA  50

seq1  TGGCAAAACAAAGTGATTTGAGTAGACTGGTCTTCAACGCAGATGTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACAAAGTGATTTGAGTAGACTGGTCTTCAACGCAGATGTTGGA  100

seq1  CAATGTTTTGTATATATATAGTTTGTGTGTATATATAGTTTTATATGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTTGTATATATATAGTTTGTGTGTATATATAGTTTTATATGGTC  150

seq1  TTGTGAGAATGAAAGAGAGAACGGTAAGAAGAAAATTGTCATCTTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAATGAAAGAGAGAACGGTAAGAAGAAAATTGTCATCTTTGGAA  200

seq1  AATCAGTGATGTCCCCTGTAGTTCTTCTGAGATGGAGGGCTGGAGGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGATGTCCCCTGTAGTTCTTCTGAGATGGAGGGCTGGAGGACTT  250

seq1  GGCATAAGGTTATTTTATGCACCATCACTGTGGCATATCAGCATTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGGTTATTTTATGCACCATCACTGTGGCATATCAGCATTAAAAT  300

seq1  GATGTGGACCATCCATTGGGGTAAACCCACAAGAAGAAGAGGAAGGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGACCATCCATTGGGGTAAACCCACAAGAAGAAGAGGAAGGTAAA  350

seq1  AGACCTAATGAAGAAGAGCTGGCTTTGTGTCCTAGCAGTTTCTAATCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAATGAAGAAGAGCTGGCTTTGTGTCCTAGCAGTTTCTAATCTAC  400

seq1  TTTCTTTGTTCTCTTCTATCTTGCAGCATTTCTACATCACACTCTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTCTCTTCTATCTTGCAGCATTTCTACATCACACTCTATGTG  450

seq1  GCTACAATCATCCATCATTCTTTGCGTGTTTGCTTTTCAAGTCTAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATCATCCATCATTCTTTGCGTGTTTGCTTTTCAAGTCTAGTCAG  500

seq1  AGGTGAACGAGATCGTGCTCTTTTGGCGAGCTGCGGCACTATTACTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACGAGATCGTGCTCTTTTGGCGAGCTGCGGCACTATTACTTTTA  550

seq1  GAAAGCAGGTGGGAAGCTCAGTGGGAACAAAATGTCATGCAGTTTGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGGTGGGAAGCTCAGTGGGAACAAAATGTCATGCAGTTTGACCC  600

seq1  CACCACCTCGGAGAAGACCTTTAGCTTTAGACAGCTGTCATATATAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTCGGAGAAGACCTTTAGCTTTAGACAGCTGTCATATATAGTTC  650

seq1  ATCGGAAGGTAGAACAGACG-TTAGGTGATCCTGCTCTTAAAATCAGTAT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCGGAAGGTAGAACAGACGTTTAGGTGATCCTGCTCTTAAAATCAGTAT  700

seq1  GGAAGCCCAGAATGACAACGCTGGAAAAGTTACTTTAACTTAGC-TTCTA  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAAGCCCAGAATGACAACGCTGGAAAAGTTACTTTAACTTAGCTTTCTA  750

seq1  CTTCACACTTAGCTCTACACTAGTTTCCTATTTCTCTATAGCTGCCTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACTTAGCTCTACACTAGTTTCCTATTTCTCTATAGCTGCCTCTG  800

seq1  ACCTCTTCCCAATGAAATTCTCATGCCATTACTACTTCACTCATACCTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCCCAATGAAATTCTCATGCCATTACTACTTCACTCATACCTGT  850

seq1  GTCAGTATTTATCACTATAAATTGACCCCTTTCTCTTTCTATTTTTGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTTATCACTATAAATTGACCCCTTTCTCTTTCTATTTTTGTGT  900

seq1  CAAGTTAAGTATACTATCACATTTCTGAATTTCCCAAATGAGAAATTTGA  948
      | ||||||||||||||||||||||||||||||||| ||| ||||  ||||
seq2  C-AGTTAAGTATACTATCACATTTCTGAATTTCCC-AATTAGAA--TTGA  946

seq1  GGTGCTTCTTTTTAAAACTTCTTTTCCTCACATTTGCAT-ATTTCCCAAT  997
      ||||||||||||| ||||||||||||||||||||||||| |||||||| |
seq2  GGTGCTTCTTTTT-AAACTTCTTTTCCTCACATTTGCATAATTTCCCATT  995

seq1  TGCTAGGACATTGACTTCTTACAGTTGTTTTTATAACTTTATTT-CATTG  1046
       ||||||||| |||||||| |||| || ||||||| |||||||| |||||
seq2  GGCTAGGACA-TGACTTCTAACAG-TGGTTTTATACCTTTATTTCCATTG  1043

seq1  TATCTTTATAACTTCTACCATAGAATAAAACATCT-TGAGAGCA-AGAGA  1094
         |||||||   | ||||| || |||||||  || ||  |||| |||||
seq2  ATACTTTATA--CTGTACCA-AGTATAAAACTACTCTGGTAGCAGAGAGA  1090

seq1  TGCCTTGTAGGCTTTCTTGCCTTATTTTATTAAATATAATGTGAAATTAG  1144
      || |||| ||||||||||| ||||||||     ||||||| ||  | |||
seq2  TG-CTTG-AGGCTTTCTTG-CTTATTTT-----ATATAATATG-GAGTAG  1131

seq1  CCCAGTGAGCTAACCTTGTGTCCT-CCAAGTTTCTT  1179
       |||| ||||||  | ||||| || |||||||||||
seq2  -CCAG-GAGCTA--CCTGTGTGCTCCCAAGTTTCTT  1163