BAC Information

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BAC

Clone NameB6Ng01-094I20
Chromosome16 (Build37)
Map Location 66,607,066 - 66,637,474
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2, 9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094I20.bB6Ng01-094I20.g
ACCDH905743DH905744
length1,1761,109
definitionDH905743|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I20, 5' end.DH905744|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,607,066 - 66,608,248)(66,636,355 - 66,637,474)
sequence
gaattcttaaagaccaggattcatataaaggaagcagtaactgtgagaac
atagacaggcatggccatttgtgttggagagagcaaaaaggagggagaga
agttgaaacagtctctaaagagtaaaaggaacacattaggaccggacaag
tgtctgtgtggtcactgaagaaatattaaaaaattatatcgagggaaaat
aaaggtaaatacttcatataataactttctgtccatagtagaaacttgtt
aggaagaagttgagagcttatcttcaagagatagtacaatgtgattgtgt
atgtgtgtgcctttattagtttgttgattttgtgtgtgtgtgtggtgttt
ttcaagacagggtttctctgtgtagccctggctgtgctggaactcactct
gtagaccaggctaggcgcgaactcagaaattcacctgcctctgcctccca
agtgctagaattaaaggcatgtgccaccactgcctggcaaatgtgtagcc
caggctggtcttgaactcatgatcctcctgcaactgcctccttcagcaaa
tcctacctgagcacatcaccacaaccagctcactgagaattttataaaca
ttttgatcatattttcccaacctttcctagtatccctcacaatcccctac
ccaccaaactactcttttgcttatttgtttctttgttgttgttgttgtta
gtcttttttttaaacccttcagatatattgctagtagctcctcatatagg
gatgagactgtgggtctacctcctctctccatctggagctttgtttgggc
ttgggactatcttggtcttatgcatgcatgataaccattggtaagttcct
atgtgcacttaccctgctgtgtccagaaaaaaaaaaaaaggtaacaaagc
aaattttgatattccatcttatcccagccatattagaaagattagcaaat
aacagacagcaattctagaaaggatattgggggaaagggacctgattcac
tgtgggtgagaatgcaatttggtccagcactcttggaaaacaaagaaagc
aacaatacagcaacaaagaaataaattcacggatggatcagctatttcca
ctcctggctataccttagactggacttctctactcggtaatacagggtta
ggcttggattgcgtgttctattcaca
gaattcctttgaaatactaccatgcaacctccaacgataggccatgtact
ccagaattcaacactattatgacttttccaatgtgtacttttgagaattc
cggggtttttatctgttaataattataaataaatctgttataaataattt
tagtcacataataaaactacaaatggtttcacttatattaaaatatcctt
tcaagtagaaaaactatatatatatatatatatatatatatatatatata
tacacacacatataattttattcttttacttactcaattacatcccactc
actgccccctcgcagtcccaaaatccttccccaatggcccgctccccttc
taatctcagcaggtgaccctaacaccctagagagccccaacccctgccac
ttcaagtatttaagtgttctcaagcaccctaggctgcaggtggtggtctg
actggctgcaaatggtggtctatttaggttccatatcatcaatgtagtga
gtcacatctaagatcacccccattgattcttgggtgccttccttatccca
ggtttctgtcttgtcctggagatgccctatctcctcattcttgttcattt
gcagattttcattcattttcatggtcatctcgccatctcttctgttcctg
aatccatcattcaccttgtcagcatccctcctttccagttcccaccctcc
atcttcatcttatgactattttattcccccgagtgagattcaaacttcct
tgcttggccttctttcttgtttaattttcttttggatctgtggagtgtaa
catggctgagctttgacagatgttttgggtctatcaaagcaaaagcataa
aactaggtttctagagttgttttatgtgtgtgtatgtgtgtgtgtacata
acacacatattctttttttctgaaacaaggaaatataacagatatagatt
agatagttatattttctctctactattatacataagtaaatctcagtaat
tttctttctactaatcacacatatgtacacaggagagactgcactgccat
ttgtagaccttgttgtattgaatgttcgtttcccaagtttggaactacga
atgcatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66607066_66608248
seq2: B6Ng01-094I20.b_50_1225

seq1  GAATTCTTAAAGACCAGGATTCATATAAAGGAAGCAGTAACTGTGAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAGACCAGGATTCATATAAAGGAAGCAGTAACTGTGAGAAC  50

seq1  ATAGACAGGCATGGCCATTTGTGTTGGAGAGAGCAAAAAGGAGGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGGCATGGCCATTTGTGTTGGAGAGAGCAAAAAGGAGGGAGAGA  100

seq1  AGTTGAAACAGTCTCTAAAGAGTAAAAGGAACACATTAGGACCGGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAACAGTCTCTAAAGAGTAAAAGGAACACATTAGGACCGGACAAG  150

seq1  TGTCTGTGTGGTCACTGAAGAAATATTAAAAAATTATATCGAGGGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGGTCACTGAAGAAATATTAAAAAATTATATCGAGGGAAAAT  200

seq1  AAAGGTAAATACTTCATATAATAACTTTCTGTCCATAGTAGAAACTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAATACTTCATATAATAACTTTCTGTCCATAGTAGAAACTTGTT  250

seq1  AGGAAGAAGTTGAGAGCTTATCTTCAAGAGATAGTACAATGTGATTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGTTGAGAGCTTATCTTCAAGAGATAGTACAATGTGATTGTGT  300

seq1  ATGTGTGTGCCTTTATTAGTTTGTTGATTTTGTGTGTGTGTGTGGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGCCTTTATTAGTTTGTTGATTTTGTGTGTGTGTGTGGTGTTT  350

seq1  TTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTGCTGGAACTCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTGCTGGAACTCACTCT  400

seq1  GTAGACCAGGCTAGGCGCGAACTCAGAAATTCACCTGCCTCTGCCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTAGGCGCGAACTCAGAAATTCACCTGCCTCTGCCTCCCA  450

seq1  AGTGCTAGAATTAAAGGCATGTGCCACCACTGCCTGGCAAATGTGTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAATTAAAGGCATGTGCCACCACTGCCTGGCAAATGTGTAGCC  500

seq1  CAGGCTGGTCTTGAACTCATGATCCTCCTGCAACTGCCTCCTTCAGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTCTTGAACTCATGATCCTCCTGCAACTGCCTCCTTCAGCAAA  550

seq1  TCCTACCTGAGCACATCACCACAACCAGCTCACTGAGAATTTTATAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTGAGCACATCACCACAACCAGCTCACTGAGAATTTTATAAACA  600

seq1  TTTTGATCATATTTTCCCAACCTTTCCTAGTATCCCTCACAATCCCCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCATATTTTCCCAACCTTTCCTAGTATCCCTCACAATCCCCTAC  650

seq1  CCACCAAACTACTCTTTTGCTTATTTGTTTCTTTGTTGTTGTTGTTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAACTACTCTTTTGCTTATTTGTTTCTTTGTTGTTGTTGTTGTTA  700

seq1  GTCTTTTTTTTAAACCCTTCAGATATATTGCTAGTAGCTCCTCATATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTTTAAACCCTTCAGATATATTGCTAGTAGCTCCTCATATAGG  750

seq1  GATGAGACTGTGGGTCTACCTCCTCTCTCCATCTGGAGCTTTGTTTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGACTGTGGGTCTACCTCCTCTCTCCATCTGGAGCTTTGTTTGGGC  800

seq1  TTGGGACTATCTTGGTCTTATGCATGCAATGATAACCATT-GTAAGTTCC  849
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  TTGGGACTATCTTGGTCTTATGCATGC-ATGATAACCATTGGTAAGTTCC  849

seq1  TATGTGCACTTACCCTGCTGTGTCCAG-AAAAAAAAAAAAGGTAACAAAG  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATGTGCACTTACCCTGCTGTGTCCAGAAAAAAAAAAAAAGGTAACAAAG  899

seq1  CAAATTTTGATATTCCATCTTATCCCAGCCATAATTAGAAAGATTAGCAA  948
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  CAAATTTTGATATTCCATCTTATCCCAGCCAT-ATTAGAAAGATTAGC-A  947

seq1  AATAACAGACAGCAAATTCTAGACAGGATATTGGGGGAAAGGGACCCTGA  998
      ||||||||||||| ||||||||| |||||||||||||||||||| |||||
seq2  AATAACAGACAGC-AATTCTAGAAAGGATATTGGGGGAAAGGGA-CCTGA  995

seq1  TTCACTGTGGGTGAGATTGCAAATTGGTCCAGCCACTC-TGGAAAACAAA  1047
      |||||||||||||||| ||||| ||||||||| ||||| |||||||| ||
seq2  TTCACTGTGGGTGAGAATGCAATTTGGTCCAG-CACTCTTGGAAAAC-AA  1043

seq1  AGAAAGCAACAATAACAGCAACAACAGAAATAAATCACCGTATGAATCAG  1097
      ||||||||||||| |||||||||| ||||||||||   || ||| |||||
seq2  AGAAAGCAACAAT-ACAGCAACAA-AGAAATAAATTCACGGATGGATCAG  1091

seq1  CTA-TCCCACT-CTGGCATAAACCTAAAGGACTTGACCTC-CTACTCCGT  1144
      ||| | ||||| ||||| || |||| |  |||| ||| || |||||| ||
seq2  CTATTTCCACTCCTGGC-TATACCTTA--GACTGGACTTCTCTACTCGGT  1138

seq1  AAATACATGGTTAGCTCTGATATTGC-TGTTCTATTCACA  1183
       |||||| ||||||  ||   ||||| |||||||||||||
seq2  -AATACAGGGTTAG-GCTTGGATTGCGTGTTCTATTCACA  1176

seq1: chr16_66636355_66637474
seq2: B6Ng01-094I20.g_66_1174 (reverse)

seq1  GAGATGCATTCTGTAGTTCCAAACTGTGGAAACGGAACCATACCAAATAC  50
      ||||||||||| |||||||||||||  |||||||  | ||| |  |||||
seq2  GAGATGCATTC-GTAGTTCCAAACTTGGGAAACG--AACATTC--AATAC  45

seq1  AACAATGTCTAACAAAATGCCAGGTGCAGTCTCTCCCTGTGTACATATGT  100
      ||||| |||||   ||||| || ||||||||||| |||||||||||||||
seq2  AACAAGGTCTA--CAAATGGCA-GTGCAGTCTCT-CCTGTGTACATATGT  91

seq1  GTGATTAGTAGAAAGAAAATTACTGAGAATTTACTTATGTATAAATAGTA  150
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  GTGATTAGTAGAAAGAAAATTACTGAG-ATTTACTTATGTAT-AATAGTA  139

seq1  GAGAGAAAATATAACTATCTAATTCTAATTATCTGTTTATATTTTCCTTG  200
      |||||||||||||||||||||| ||||  |||||| ||||| ||||||||
seq2  GAGAGAAAATATAACTATCTAA-TCTA--TATCTG-TTATA-TTTCCTTG  184

seq1  TTTCAGAAAAAA--GATATGTGTG-TATGTACACACACACATACACACAC  247
      ||||||||||||   ||||||||| |||||||||||||||||||||||||
seq2  TTTCAGAAAAAAAGAATATGTGTGTTATGTACACACACACATACACACAC  234

seq1  ATAAAACAACTCTAGAAACCTAGTTTTATGCTTTTGCTTTGATAGA-CCA  296
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAAAACAACTCTAGAAACCTAGTTTTATGCTTTTGCTTTGATAGACCCA  284

seq1  AAACATCTGTCAAAGCTCAGCCATGTTACACTCCACAGATCCAAA--GAA  344
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  AAACATCTGTCAAAGCTCAGCCATGTTACACTCCACAGATCCAAAAGAAA  334

seq1  ATTAAACAAGAAAGAAGGCCTAAGCAAGGAAGTTTGAATCTCACTCGGGG  394
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTAAACAAGAAAGAAGGCC-AAGCAAGGAAGTTTGAATCTCACTCGGGG  383

seq1  GAATAAAATAGTCATAAGATGAAGATGGAGGGTGGGAACTGGAAAGGAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATAGTCATAAGATGAAGATGGAGGGTGGGAACTGGAAAGGAGG  433

seq1  GATGCTGACAAGGTGAATGATGGATTCAGGAACAGAAGAGATGGCGAGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGACAAGGTGAATGATGGATTCAGGAACAGAAGAGATGGCGAGAT  483

seq1  GACCATGAAAATGAATGAAAATCTGCAAATGAACAAGAATGAGGAGATAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAAAATGAATGAAAATCTGCAAATGAACAAGAATGAGGAGATAG  533

seq1  GGCATCTCCAGGACAAGACAGAAACCTGGGATAAGGAAGGCACCCAAGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCCAGGACAAGACAGAAACCTGGGATAAGGAAGGCACCCAAGAA  583

seq1  TCAATGGGGGTGATCTTAGATGTGACTCACTACATTGATGATATGGAACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGGGGTGATCTTAGATGTGACTCACTACATTGATGATATGGAACC  633

seq1  TAAATAGACCACCATTTGCAGCCAGTCAGACCACCACCTGCAGCCTAGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGACCACCATTTGCAGCCAGTCAGACCACCACCTGCAGCCTAGGG  683

seq1  TGCTTGAGAACACTTAAATACTTGAAGTGGCAGGGGTTGGGGCTCTCTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGAACACTTAAATACTTGAAGTGGCAGGGGTTGGGGCTCTCTAG  733

seq1  GGTGTTAGGGTCACCTGCTGAGATTAGAAGGGGAGCGGGCCATTGGGGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAGGGTCACCTGCTGAGATTAGAAGGGGAGCGGGCCATTGGGGAA  783

seq1  GGATTTTGGGACTGCGAGGGGGCAGTGAGTGGGATGTAATTGAGTAAGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGGGACTGCGAGGGGGCAGTGAGTGGGATGTAATTGAGTAAGTA  833

seq1  AAAGAATAAAATTATATGTGTGTGTATATATATATATATATATATATATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAAAATTATATGTGTGTGTATATATATATATATATATATATATA  883

seq1  TATATATATATAGTTTTTCTACTTGAAAGGATATTTTAATATAAGTGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATAGTTTTTCTACTTGAAAGGATATTTTAATATAAGTGAAA  933

seq1  CCATTTGTAGTTTTATTATGTGACTAAAATTATTTATAACAGATTTATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTAGTTTTATTATGTGACTAAAATTATTTATAACAGATTTATTT  983

seq1  ATAATTATTAACAGATAAAAACCCCGGAATTCTCAAAAGTACACATTGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTAACAGATAAAAACCCCGGAATTCTCAAAAGTACACATTGGA  1033

seq1  AAAGTCATAATAGTGTTGAATTCTGGAGTACATGGCCTATCGTTGGAGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATAATAGTGTTGAATTCTGGAGTACATGGCCTATCGTTGGAGGT  1083

seq1  TGCATGGTAGTATTTCAAAGGAATTC  1120
      ||||||||||||||||||||||||||
seq2  TGCATGGTAGTATTTCAAAGGAATTC  1109