BAC Information

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BAC

Clone NameB6Ng01-095D24
Chromosome16 (Build37)
Map Location 89,390,220 - 89,391,345
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095D24.b
ACCDH906242
length1,101
definitionDH906242|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D24, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcctttgtcctgtctcaaagttttaaacataaattttcctg
aaatacctttcccattttcaggaatgaatgtctttatagaaaactctaat
tcaaaactcatgctgaatatcttacggatctgcacaccagttttgttgct
atggcacctttctggctcgcccttcggtctagtcaggtcatcttcaaaaa
ggtcacgaaatgcctctcactctctcatttccgaaactgtgccaccatca
tcaactgaccaagatactccaggactgctctgtgcctctttagaagtaga
tgaaattgtccaatcctagtgggatctttataatgtgggaaatctttggt
catcagagagatgaatcagagtccaggttctttgattgagacaatacaca
agacatattcttgaactagttggacattatctaaagtgtgtttggttgat
aatgtgtccctcatgcatttgctcaatccctcctaattatcctaacgttt
atttgctgccctgtgattacagcttcattaccatgcggggtcaatgcacc
atgcatggtagcagagcaaatccagttcagcagcagcaaggggcacacgt
cttctgccagtaacacacttgacttgaacaagtattttgttttaaatact
ttcgttgtgctgattctaaattgtagcactaccaaaaggattgacatgat
aggaaagagactgtcttgaaattatatctaccttgggatatactaaaact
tcaaaactatgtatctgaaagatttcggttataaaaacataaattataaa
gtatttattactcatgctaaggattgtgtcttagagaatcctatgagcaa
tatattaattaatatctaaagttcaaattactgttttctctgtgagactc
ctttgaagaaattcatatgcagctcttacacagttcttacaatgaaagta
aattgcatctaaagtatataatgcagccttaaagatattgagagtcgttt
aattcatattttacatgtgagaaacgagtttgaaaaaaggttatattact
taacagccgaagctgctacgacaaatgttcctctgacatcaatggctgtc
c
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89390220_89391345
seq2: B6Ng01-095D24.b_47_1147

seq1  GAATTCATTTCCTTTGTCCTGTCTCAAAGTTTTAAACATAAATTTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTTTGTCCTGTCTCAAAGTTTTAAACATAAATTTTCCTG  50

seq1  AAATACCTTTCCCATTTTCAGGAATGAATGTCTTTATAGAAAACTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTTCCCATTTTCAGGAATGAATGTCTTTATAGAAAACTCTAAT  100

seq1  TCAAAACTCATGCTGAATATCTTACGGATCTGCACACCAGTTTTGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTCATGCTGAATATCTTACGGATCTGCACACCAGTTTTGTTGCT  150

seq1  ATGGCACCTTTCTGGCTCGCCCTTCGGTCTAGTCAGGTCATCTTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCTTTCTGGCTCGCCCTTCGGTCTAGTCAGGTCATCTTCAAAAA  200

seq1  GGTCACGAAATGCCTCTCACTCTCTCATTTCCGAAACTGTGCCACCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACGAAATGCCTCTCACTCTCTCATTTCCGAAACTGTGCCACCATCA  250

seq1  TCAACTGACCAAGATACTCCAGGACTGCTCTGTGCCTCTTTAGAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGACCAAGATACTCCAGGACTGCTCTGTGCCTCTTTAGAAGTAGA  300

seq1  TGAAATTGTCCAATCCTAGTGGGATCTTTATAATGTGGGAAATCTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTGTCCAATCCTAGTGGGATCTTTATAATGTGGGAAATCTTTGGT  350

seq1  CATCAGAGAGATGAATCAGAGTCCAGGTTCTTTGATTGAGACAATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGAGATGAATCAGAGTCCAGGTTCTTTGATTGAGACAATACACA  400

seq1  AGACATATTCTTGAACTAGTTGGACATTATCTAAAGTGTGTTTGGTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATTCTTGAACTAGTTGGACATTATCTAAAGTGTGTTTGGTTGAT  450

seq1  AATGTGTCCCTCATGCATTTGCTCAATCCCTCCTAATTATCCTAACGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCCCTCATGCATTTGCTCAATCCCTCCTAATTATCCTAACGTTT  500

seq1  ATTTGCTGCCCTGTGATTACAGCTTCATTACCATGCGGGGTCAATGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGCCCTGTGATTACAGCTTCATTACCATGCGGGGTCAATGCACC  550

seq1  ATGCATGGTAGCAGAGCAAATCCAGTTCAGCAGCAGCAAGGGGCACACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGGTAGCAGAGCAAATCCAGTTCAGCAGCAGCAAGGGGCACACGT  600

seq1  CTTCTGCCAGTAACACACTTGACTTGAACAAGTATTTTGTTTTAAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCAGTAACACACTTGACTTGAACAAGTATTTTGTTTTAAATACT  650

seq1  TTCGTTGTGCTGATTCTAAATTGTAGCACTACCAAAAGGATTGACATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGTGCTGATTCTAAATTGTAGCACTACCAAAAGGATTGACATGAT  700

seq1  AGGAAAGAGACTGTCTTGAAATTATATCTACCTTGGGATATACTAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGACTGTCTTGAAATTATATCTACCTTGGGATATACTAAAACT  750

seq1  TCAAAACTATGTATCTGAAAGATTTCGGTTAATAAAAACATAAATTATAA  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAAAACTATGTATCTGAAAGATTTCGGTT-ATAAAAACATAAATTATAA  799

seq1  AGTATTTATTACTCATGCTAAGGATTGTGTCTTAGAGAATCCTATGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTATTTATTACTCATGCTAAGGATTGTGTCTTAGAGAATCCTATGAGC-  848

seq1  AATATATTAATTAATATCTTAAAGTTCAAATTACTGTTTTCTCTGTGAAG  900
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  AATATATTAATTAATATC-TAAAGTTCAAATTACTGTTTTCTCTGTG-AG  896

seq1  ACTCCTTTGAAGAAATTCATATGGCAGGCTCTTACAACAGTTCTTACAAT  950
      |||||||||||||||||||||| ||| |||||||| ||||||||||||||
seq2  ACTCCTTTGAAGAAATTCATAT-GCA-GCTCTTAC-ACAGTTCTTACAAT  943

seq1  GAAAAGTAAATTGCATCTTAAAGTATTATTAATGCGAGCCTTAAAAGAAT  1000
      | ||||||||||||||| ||||||||   |||||| |||||||||   ||
seq2  G-AAAGTAAATTGCATC-TAAAGTAT--ATAATGC-AGCCTTAAA--GAT  986

seq1  ATTGAGGAAGTCGTTTAATTCATATTTTACATGTGAGGAAACAGAGTTTG  1050
      ||||||  |||||||||||||||||||||||||||| ||||| |||||||
seq2  ATTGAG--AGTCGTTTAATTCATATTTTACATGTGA-GAAAC-GAGTTTG  1032

seq1  AAAAAAAGCGTTATATTACTAACCAAGGCAGAAGCTGCTCACGACAAATG  1100
      ||||||   ||||||||||| | ||  || ||||||||| ||||||||||
seq2  AAAAAA--GGTTATATTACTTAACA--GCCGAAGCTGCT-ACGACAAATG  1077

seq1  TTCACCCTGACATCAGTGGCTTGTCC  1126
      ||| | ||||||||| |||| |||||
seq2  TTC-CTCTGACATCAATGGC-TGTCC  1101