BAC Information

Click to search

BAC

Clone NameB6Ng01-097B21
Chromosome16 (Build37)
Map Location 73,045,877 - 73,153,618
singlet/doubletdoublet
Overlap geneRobo1, LOC100039310, LOC100039318
Upstream genenone
Downstream geneLOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097B21.bB6Ng01-097B21.g
ACCDH907573DH907574
length1,1101,029
definitionDH907573|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B21, 5' end.DH907574|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,152,508 - 73,153,618)(73,045,877 - 73,046,908)
sequence
gaattcaggcagtagcccagacttggcacaatgttgatgtaaccctcctg
ccttcgtcgtcaacattctgagattataagcattgaataccataccatgt
gcccagcattatagtatgataaaaaataaaacaacacccaaaactacaag
tgtcttaatagtctatgatgattattaatatttttatatattactattgg
tctagaaaaacttcaagccattttgtgtgtattggatgttgccctgactt
gggatatgtaattattattacatgcctgccacttttacattttcccctgt
agcatgttccaaagttgagttttctcaaacaccagtagtacatttttcta
atctggatgcagtaaataaaagattttgatgaactgaaaacttctttctt
ggcaatgcatcttaggtggatacataaaagagctgttccgtttttttgaa
cgagtccggaggggttattttgaaactgttctcagtctcccactttaaaa
gcagaatcgtttcaatccctttaatttcccctcctgagtgtaattttcca
gtcctttcatttatgtggttctccaacgagtcctacacaaagttcattaa
actcctttaggagcctgaaattgggcattgttctctaataacaataaaac
gttgagtacagcaagaagataacactgaaatttttggatgcaaatttggc
atcctactaaggaatttgtgtatttttagtatcattcttgaattgttact
ttctatggaaataaatacagatcctggctccagagagattaccatgaaaa
caaaaacacagaattgtttagggcattaagatccttctgtgacatgaatt
ctggagaggagagagttccatgaaaaaggagtttgtaccggttttcaatt
attaccacatcactgctacgtagtagagggttgaacgatcacagggctct
agaaaatattcctgaacaaataagtaactggatagacatgaatatgtgaa
atggacagaagagggaaaaataataaatgtgatattcatagcttattttt
aattagagttataaacatagcaatgccagatactattcatctaccttacc
cactgaaaga
gaattccaactcggaattgccaagtgatgctctgtgactgtaggtttcta
taattttttttgacattttaagaatttcattgactttataattggtgcta
tttgaagaaaacaaaatgaatctttagtcatgcataggtatcaggcttga
cccccacaaagccaaacaaaactgaactacaaaataaataaataaataaa
taaataaataaataaataaaagcaaataaaaacaaaaggctggtattcac
ctaaaactaagtgtattcatttagctaatttgaagaagccccatgtccca
tagaaaggatgtgcagttctaagggaacaatccacgtgattaatgttttc
attatgttcatgtaagaaacctctttatttttagccatacttttgcatac
tgaaaattcaataatcagaaaagtaattttgtcatattatttattaaaaa
tgttctcaaatacatcatccttccttgtgttgattttttttttcattgta
tgactatcagatttattccattaaatcacaaagttgttttgtcttcgcat
ttcaccaccacattatgaaaacgaaggagttctcagttttcctaatgagc
atccaggttctactaccaagcaaaaaattctcattgcagttgtgtgaagt
aagtgggagctgattctcaagttgaagttagctgtgtggtcagagagcga
ctctgaaaggtgtgctgtgtttggttctgtatgtgtatctgaatttcagt
tagcctgtttctgaaatgatcaggatgcaactccagtaaacctcattggt
caagcttgaaccacctatgttctgtcagtaagaaagcttataaatcccat
tgcttgtcagagaaaatttgggctggcactgatataccaggttgcacgct
gtgatcagttaaagcaccatactgcagaatgtcacgtggatggggtacca
tgggctaccgtgcttggaaatgtcaagatcacagaatgtctgagctaaga
tccctgacacccaccccaccaccctgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73152508_73153618
seq2: B6Ng01-097B21.b_48_1157 (reverse)

seq1  TCTTTCAGTGGGTAA-GTAGATG-ATAGTATCTGGCATTGCTATTGGTTT  48
      ||||||||||||||| ||||||| ||||||||||||||||||||  ||||
seq2  TCTTTCAGTGGGTAAGGTAGATGAATAGTATCTGGCATTGCTAT--GTTT  48

seq1  ATAACTCTAAT--AAAATAAGCTATGATTATCACATTTATTTAATTTTTT  96
      |||||||||||  |||||||||||||| |||||||||||||    |||||
seq2  ATAACTCTAATTAAAAATAAGCTATGAATATCACATTTATT---ATTTTT  95

seq1  CCCTC-TCTGTCCATTTTCACATATTCATGTCTATCCAGTTACTTATTTG  145
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGTCCA-TTTCACATATTCATGTCTATCCAGTTACTTATTTG  144

seq1  TTCAGGAAATATTTTCTAGAG-CCTGTGATCGTTCAACCCTCTACTACGT  194
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCAGG-AATATTTTCTAGAGCCCTGTGATCGTTCAACCCTCTACTACGT  193

seq1  AGCAGTGATGTGGTAATAATTGAAAACCGGTACAAACTCCTTTTTCATGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGATGTGGTAATAATTGAAAACCGGTACAAACTCCTTTTTCATGG  243

seq1  AACTCTCTCCTCTCCAGAATTCATGTCACAGAAGGATCTTAATGCCCTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTCCTCTCCAGAATTCATGTCACAGAAGGATCTTAATGCCCTAA  293

seq1  ACAATTCTGTGTTTTTGTTTTCATGGTAATCTCTCTGGAGCCAGGATCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTGTGTTTTTGTTTTCATGGTAATCTCTCTGGAGCCAGGATCTG  343

seq1  TATTTATTTCCATAGAAAGTAACAATTCAAGAATGATACTAAAAATACAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTCCATAGAAAGTAACAATTCAAGAATGATACTAAAAATACAC  393

seq1  AAATTCCTTAGTAGGATGCCAAATTTGCATCCAAAAATTTCAGTGTTATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTAGTAGGATGCCAAATTTGCATCCAAAAATTTCAGTGTTATC  443

seq1  TTCTTGCTGTACTCAACGTTTTATTGTTATTAGAGAACAATGCCCAATTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTGTACTCAACGTTTTATTGTTATTAGAGAACAATGCCCAATTT  493

seq1  CAGGCTCCTAAAGGAGTTTAATGAACTTTGTGTAGGACTCGTTGGAGAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTAAAGGAGTTTAATGAACTTTGTGTAGGACTCGTTGGAGAAC  543

seq1  CACATAAATGAAAGGACTGGAAAATTACACTCAGGAGGGGAAATTAAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATGAAAGGACTGGAAAATTACACTCAGGAGGGGAAATTAAAGG  593

seq1  GATTGAAACGATTCTGCTTTTAAAGTGGGAGACTGAGAACAGTTTCAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAACGATTCTGCTTTTAAAGTGGGAGACTGAGAACAGTTTCAAAA  643

seq1  TAACCCCTCCGGACTCGTTCAAAAAAACGGAACAGCTCTTTTATGTATCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCTCCGGACTCGTTCAAAAAAACGGAACAGCTCTTTTATGTATCC  693

seq1  ACCTAAGATGCATTGCCAAGAAAGAAGTTTTCAGTTCATCAAAATCTTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGATGCATTGCCAAGAAAGAAGTTTTCAGTTCATCAAAATCTTTT  743

seq1  ATTTACTGCATCCAGATTAGAAAAATGTACTACTGGTGTTTGAGAAAACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGCATCCAGATTAGAAAAATGTACTACTGGTGTTTGAGAAAACT  793

seq1  CAACTTTGGAACATGCTACAGGGGAAAATGTAAAAGTGGCAGGCATGTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGGAACATGCTACAGGGGAAAATGTAAAAGTGGCAGGCATGTAA  843

seq1  TAATAATTACATATCCCAAGTCAGGGCAACATCCAATACACACAAAATGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTACATATCCCAAGTCAGGGCAACATCCAATACACACAAAATGG  893

seq1  CTTGAAGTTTTTCTAGACCAATAGTAATATATAAAAATATTAATAATCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTTTTTCTAGACCAATAGTAATATATAAAAATATTAATAATCAT  943

seq1  CATAGACTATTAAGACACTTGTAGTTTTGGGTGTTGTTTTATTTTTTATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTATTAAGACACTTGTAGTTTTGGGTGTTGTTTTATTTTTTATC  993

seq1  ATACTATAATGCTGGGCACATGGTATGGTATTCAATGCTTATAATCTCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATAATGCTGGGCACATGGTATGGTATTCAATGCTTATAATCTCAG  1043

seq1  AATGTTGACGACGAAGGCAGGAGGGTTACATCAACATTGTGCCAAGTCTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGACGACGAAGGCAGGAGGGTTACATCAACATTGTGCCAAGTCTG  1093

seq1  GGCTACTGCCTGAATTC  1111
      |||||||||||||||||
seq2  GGCTACTGCCTGAATTC  1110

seq1: chr16_73045877_73046908
seq2: B6Ng01-097B21.g_65_1093

seq1  GAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCGGAATTGCCAAGTGATGCTCTGTGACTGTAGGTTTCTA  50

seq1  TAATTTTTTTTGACATTTTAAGAATTTCATTGACTTTATAATTGGTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTTGACATTTTAAGAATTTCATTGACTTTATAATTGGTGCTA  100

seq1  TTTGAAGAAAACAAAATGAATCTTTAGTCATGCATAGGTATCAGGCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAAACAAAATGAATCTTTAGTCATGCATAGGTATCAGGCTTGA  150

seq1  CCCCCACAAAGCCAAACAAAACTGAACTACAAAATAAATAAATAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAAAGCCAAACAAAACTGAACTACAAAATAAATAAATAAATAAA  200

seq1  TAAATAAATAAATAAATAAAAGCAAATAAAAACAAAAGGCTGGTATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAAAGCAAATAAAAACAAAAGGCTGGTATTCAC  250

seq1  CTAAAACTAAGTGTATTCATTTAGCTAATTTGAAGAAGCCCCATGTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTAAGTGTATTCATTTAGCTAATTTGAAGAAGCCCCATGTCCCA  300

seq1  TAGAAAGGATGTGCAGTTCTAAGGGAACAATCCACGTGATTAATGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGATGTGCAGTTCTAAGGGAACAATCCACGTGATTAATGTTTTC  350

seq1  ATTATGTTCATGTAAGAAACCTCTTTATTTTTAGCCATACTTTTGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTCATGTAAGAAACCTCTTTATTTTTAGCCATACTTTTGCATAC  400

seq1  TGAAAATTCAATAATCAGAAAAGTAATTTTGTCATATTATTTATTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTCAATAATCAGAAAAGTAATTTTGTCATATTATTTATTAAAAA  450

seq1  TGTTCTCAAATACATCATCCTTCCTTGTGTTGATTTTTTTTTTCATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAAATACATCATCCTTCCTTGTGTTGATTTTTTTTTTCATTGTA  500

seq1  TGACTATCAGATTTATTCCATTAAATCACAAAGTTGTTTTGTCTTCGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATCAGATTTATTCCATTAAATCACAAAGTTGTTTTGTCTTCGCAT  550

seq1  TTCACCACCACATTATGAAAACGAAGGAGTTCTCAGTTTTCCTAATGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACCACATTATGAAAACGAAGGAGTTCTCAGTTTTCCTAATGAGC  600

seq1  ATCCAGGTTCTACTACCAAGCAAAAAATTCTCATTGCAGTTGTGTGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGTTCTACTACCAAGCAAAAAATTCTCATTGCAGTTGTGTGAAGT  650

seq1  AAGTGGGAGCTGATTCTCAAGTTGAAGTTAGCTGTGTGGTCAGAGAGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAGCTGATTCTCAAGTTGAAGTTAGCTGTGTGGTCAGAGAGCGA  700

seq1  CTCTGAAAGGTGTGCTGTGTTTGGTTCTGTATGTGTATCTGAATTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGGTGTGCTGTGTTTGGTTCTGTATGTGTATCTGAATTTCAGT  750

seq1  TAGCCTGTTTCTGAAATGATCAGGATGCAACTCCAGTAAACCTCATTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTTTCTGAAATGATCAGGATGCAACTCCAGTAAACCTCATTGGT  800

seq1  CAAGCTTGAACCACCTATGTTCTGTCAGTAAGAAAGCTTATAAATCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGAACCACCTATGTTCTGTCAGTAAGAAAGCTTATAAATCCCAT  850

seq1  TGCTTGTCAGAGAAAATTTGGGCTGGCACTGATATACCAGGTTGCACGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCAGAGAAAATTTGGGCTGGCACTGATATACCAGGTTGCACGCT  900

seq1  GTGATCAGTTAAAGCACCATACTGCAGAATGTCACGTGGATGGGGTACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGTTAAAGCACCATACTGCAGAATGTCACGTGGATGGGGTACCA  950

seq1  T-GGCTACCGTGGCTTGGAAATGTCAAGATCCACAGAATGTCCTGGAGCT  999
      | ||||||||| |||||||||||||||||| |||||||||||   |||||
seq2  TGGGCTACCGT-GCTTGGAAATGTCAAGAT-CACAGAATGTC--TGAGCT  996

seq1  TAGATCCCTGACACCCACCCACCCACCCTGTGA  1032
       |||||||||||||||||||  |||||||||||
seq2  AAGATCCCTGACACCCACCCCACCACCCTGTGA  1029