BAC Information

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BAC

Clone NameB6Ng01-097M21
Chromosome16 (Build37)
Map Location 40,930,613 - 41,027,094
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097M21.bB6Ng01-097M21.g
ACCDH908076DH908077
length6791,181
definitionDH908076|Mus musculus domesticus DNA, BAC clone: B6Ng01-097M21, 5' end.DH908077|Mus musculus domesticus DNA, BAC clone: B6Ng01-097M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,026,418 - 41,027,094)(40,930,613 - 40,931,802)
sequence
gaattcaaaagtcacatcattgaaatctacagaagaattagacctgttac
ccatcaaagccaagaatgaaaaattggaattggaggacagttgatagatt
aggaagtgtaaattaaaagatgtgaaataaaaggaaaaattagtaggaag
acagccctgaagatcaattaagctaacaaatcaccaaaaataggtatttc
aactatatcgcagtagttattttaaaatatatattatattctcttaaatt
aaagagtaattcccatttcctagattcatgtcatttcccaggcaatgtca
actttgcacatattatccctgtgactgagtcacccctgtgacctagtgtt
atgcttgtttacagagtaggtatctccatctagcatagtgaggaacatcc
ccatggcacttttattttaaaagagaggtgaatggtcaattatatgctac
aaagagagaacgctgagatctcagtgacccctgaggacaacactgtgcat
ttgttttaagtcagaggaaagttggcgtcttggtggggaggaaggtgtgt
atgaacctagaggttcaaatgcgaaatgagctttgtgaacttctactgaa
aaaaaaaaaaatgctacataaaaattttagggacaaaagtcaggagattt
ctggacatctattcaaaacaatgtgaaat
gaattcacacacacacacacacacacacacacacacacacacacacaaaa
atcacaactttcctcaagagcagtcttacctgcactacatcccatttaat
tgcattgtattagagcagtttattcagattgtaactaattgaggaataag
aataatttgctaaatctagagatgtagttcagtggtataatgctttgtct
agcatgtagcaggccctgtgtttaataagaataattacttttagtgcaga
aacagaggctacaaggcatggagttgcctgaactatctatcagtaatatt
taacttttgtactcaatcaactccaccttatgacctttggaagaaaactt
tcagctcaggaagaaaatatcacgtagaccaataaggccgatcggctggc
aggtgatggccttcgttatagtcaaaatgttagctttggtttaaaacaac
tgaacatgctttaaattcttcttttgaaaagacactaaacaaggcaatac
cctgtttgggaatgatttattcaggagtaaaagctcagtttgggagagcg
aacacaggcatctctttttcatttgtttgtgtctcttcataactaataca
agacaggaaatcagtatcctaaaagaaagagagagagagagagaatgaga
gatagagagagagagagagagaaagcattctttatagatatatgactaat
atttttgtccttattccctattctttttaaatttattaaaaaatgtgtgc
acagtatgtccagctgattctccattagaagcaaggtagaatataggcca
cattctagaatgataggccacattctaagaagcaatagtgttggcacact
ggcctttgaatcctgaggaacttgcccagtggctcagacatcactagtca
ttaatttcaaaatgcatcaatgccctcctgataaaataagaatgagattc
ttcttgggaaaaatcacagtacagataatattctgactgtctgagactgt
aatgttcttggaaaacaaacatggttcgagactgattttacaattttaac
aataaatcatgaaaattcctcttagaggaaaaatctttcaagtgggagaa
tataattattaattaattggttcgtagactagataaagaagtattggata
ggcctttctaccaaaatattttcaaaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41026418_41027094
seq2: B6Ng01-097M21.b_49_726 (reverse)

seq1  TTTCACATTTGTTTTGATTAGATGTCCAGAAATCTCCTGACTTTTGT-CC  49
      ||||||| ||||||||| ||||||||||||||||||||||||||||| ||
seq2  TTTCACA-TTGTTTTGAATAGATGTCCAGAAATCTCCTGACTTTTGTCCC  49

seq1  TGAAATTTTTATGTAGC-TTTTTTTTTTTTTCAGTAGAAGTTCACAAAGC  98
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTATGTAGCATTTTTTTTTTTTTCAGTAGAAGTTCACAAAGC  99

seq1  TCATTTCGCATTTGAACCTCTAGGTTCATACACACCTTCCTCCCCACCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCGCATTTGAACCTCTAGGTTCATACACACCTTCCTCCCCACCAA  149

seq1  GACGCCAACTTTCCTCTGACTTAAAACAAATGCACAGTGTTGTCCTCAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCAACTTTCCTCTGACTTAAAACAAATGCACAGTGTTGTCCTCAGG  199

seq1  GGTCACTGAGATCTCAGCGTTCTCTCTTTGTAGCATATAATTGACCATTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGAGATCTCAGCGTTCTCTCTTTGTAGCATATAATTGACCATTC  249

seq1  ACCTCTCTTTTAAAATAAAAGTGCCATGGGGATGTTCCTCACTATGCTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTTTTAAAATAAAAGTGCCATGGGGATGTTCCTCACTATGCTAG  299

seq1  ATGGAGATACCTACTCTGTAAACAAGCATAACACTAGGTCACAGGGGTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATACCTACTCTGTAAACAAGCATAACACTAGGTCACAGGGGTGA  349

seq1  CTCAGTCACAGGGATAATATGTGCAAAGTTGACATTGCCTGGGAAATGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCACAGGGATAATATGTGCAAAGTTGACATTGCCTGGGAAATGAC  399

seq1  ATGAATCTAGGAAATGGGAATTACTCTTTAATTTAAGAGAATATAATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTAGGAAATGGGAATTACTCTTTAATTTAAGAGAATATAATATA  449

seq1  TATTTTAAAATAACTACTGCGATATAGTTGAAATACCTATTTTTGGTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAATAACTACTGCGATATAGTTGAAATACCTATTTTTGGTGAT  499

seq1  TTGTTAGCTTAATTGATCTTCAGGGCTGTCTTCCTACTAATTTTTCCTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCTTAATTGATCTTCAGGGCTGTCTTCCTACTAATTTTTCCTTT  549

seq1  TATTTCACATCTTTTAATTTACACTTCCTAATCTATCAACTGTCCTCCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACATCTTTTAATTTACACTTCCTAATCTATCAACTGTCCTCCAA  599

seq1  TTCCAATTTTTCATTCTTGGCTTTGATGGGTAACAGGTCTAATTCTTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTTTCATTCTTGGCTTTGATGGGTAACAGGTCTAATTCTTCTG  649

seq1  TAGATTTCAATGATGTGACTTTTGAATTC  677
      |||||||||||||||||||||||||||||
seq2  TAGATTTCAATGATGTGACTTTTGAATTC  678

seq1: chr16_40930613_40931802
seq2: B6Ng01-097M21.g_70_1250

seq1  GAATTCACACACACACACACACACACACACACACACACACACACACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACACACACACACACACACACACACACACACACACACAAAA  50

seq1  ATCACAACTTTCCTCAAGAGCAGTCTTACCTGCACTACATCCCATTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACTTTCCTCAAGAGCAGTCTTACCTGCACTACATCCCATTTAAT  100

seq1  TGCATTGTATTAGAGCAGTTTATTCAGATTGTAACTAATTGAGGAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTATTAGAGCAGTTTATTCAGATTGTAACTAATTGAGGAATAAG  150

seq1  AATAATTTGCTAAATCTAGAGATGTAGTTCAGTGGTATAATGCTTTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGCTAAATCTAGAGATGTAGTTCAGTGGTATAATGCTTTGTCT  200

seq1  AGCATGTAGCAGGCCCTGTGTTTAATAAGAATAATTACTTTTAGTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTAGCAGGCCCTGTGTTTAATAAGAATAATTACTTTTAGTGCAGA  250

seq1  AACAGAGGCTACAAGGCATGGAGTTGCCTGAACTATCTATCAGTAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGCTACAAGGCATGGAGTTGCCTGAACTATCTATCAGTAATATT  300

seq1  TAACTTTTGTACTCAATCAACTCCACCTTATGACCTTTGGAAGAAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTGTACTCAATCAACTCCACCTTATGACCTTTGGAAGAAAACTT  350

seq1  TCAGCTCAGGAAGAAAATATCACGTAGACCAATAAGGCCGATCGGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCAGGAAGAAAATATCACGTAGACCAATAAGGCCGATCGGCTGGC  400

seq1  AGGTGATGGCCTTCGTTATAGTCAAAATGTTAGCTTTGGTTTAAAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGGCCTTCGTTATAGTCAAAATGTTAGCTTTGGTTTAAAACAAC  450

seq1  TGAACATGCTTTAAATTCTTCTTTTGAAAAGACACTAAACAAGGCAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGCTTTAAATTCTTCTTTTGAAAAGACACTAAACAAGGCAATAC  500

seq1  CCTGTTTGGGAATGATTTATTCAGGAGTAAAAGCTCAGTTTGGGAGAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGGGAATGATTTATTCAGGAGTAAAAGCTCAGTTTGGGAGAGCG  550

seq1  AACACAGGCATCTCTTTTTCATTTGTTTGTGTCTCTTCATAACTAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGCATCTCTTTTTCATTTGTTTGTGTCTCTTCATAACTAATACA  600

seq1  AGACAGGAAATCAGTATCCTAAAAGAAAGAGAGAGAGAGAGAGAATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAATCAGTATCCTAAAAGAAAGAGAGAGAGAGAGAGAATGAGA  650

seq1  GATAGAGAGAGAGAGAGAGAGAAAGCATTCTTTATAGATATATGACTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAGAGAGAGAGAGAGAAAGCATTCTTTATAGATATATGACTAAT  700

seq1  ATTTTTGTCCTTATTCCCTATTC-TTTTAAATTTATTAAAAAATGTGTGC  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTTTTGTCCTTATTCCCTATTCTTTTTAAATTTATTAAAAAATGTGTGC  750

seq1  ACAGTATGTCCAGCTGATTCTCCATTAGAAGCAAGGTAGAATATAGGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGTCCAGCTGATTCTCCATTAGAAGCAAGGTAGAATATAGGCCA  800

seq1  CATTCTAGAATGATAGGCCACATTCTAAGAAGCAATAGTGTTGGCACACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGAATGATAGGCCACATTCTAAGAAGCAATAGTGTTGGCACACT  850

seq1  GGCCTTTGAATCCTGAGGAACTTGCCAAGTGGCTCAGACATCACTAGTCA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCCTTTGAATCCTGAGGAACTTGCCCAGTGGCTCAGACATCACTAGTCA  900

seq1  TTAATTTCAAAATGCATCAATGCCCTCCTGATAAAATAAGAATGAGATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCAAAATGCATCAATGCCCTCCTGATAAAATAAGAATGAGATTC  950

seq1  TTCTT-GGAAAAATCACAGTACAGATAAATAATTCTGACTGTTCTGAGAC  998
      ||||| ||||||||||||||||||||||   |||||||||| ||||||||
seq2  TTCTTGGGAAAAATCACAGTACAGATAA--TATTCTGACTG-TCTGAGAC  997

seq1  TGT-ATGTTCTTGGAAAACAAACATTGGTTCGAGACTGATTTTACAAATT  1047
      ||| |||||||||||||||||||| ||||||||||||||||||||||  |
seq2  TGTAATGTTCTTGGAAAACAAACA-TGGTTCGAGACTGATTTTACAA--T  1044

seq1  TTAAACAAATAAAATCATGAAAATTTCTCTTTAGAGGAAAAAGCTTTCCA  1097
      || |||||   |||||||||||||| ||| |||||||||||| |||| ||
seq2  TTTAACAA--TAAATCATGAAAATTCCTC-TTAGAGGAAAAATCTTT-CA  1090

seq1  AGTTGGAGATATATATTATTTATATTTATTTGTTCCGTAGACTAGTAGAG  1147
      ||| |||||   |||| |||  || ||| ||| | ||||||||||   | 
seq2  AGTGGGAGA---ATATAATTATTAATTAATTGGTTCGTAGACTAGATAAA  1137

seq1  GTAGTTATTGGGATAG--CTTTTTCACAATAT-TTTTCAAAAACAG  1190
      | || |||| ||||||  |||| |  ||| || |||||||||||||
seq2  GAAG-TATT-GGATAGGCCTTTCTACCAAAATATTTTCAAAAACAG  1181