BAC Information

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BAC

Clone NameB6Ng01-098E12
Chromosome16 (Build37)
Map Location 5,579,342 - 5,752,607
singlet/doubletdoublet
Overlap geneLOC100042436
Upstream geneGlis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Downstream geneA2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098E12.bB6Ng01-098E12.g
ACCDH908416DH908417
length1,1141,132
definitionDH908416|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E12, 5' end.DH908417|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,751,486 - 5,752,607)(5,579,342 - 5,580,498)
sequence
gaattctgggagccaaagtcaggccctctgtaggaacagcaatcaccctt
aaacaccaagtatctctccagcccctaaggctcaccttaatgccagcttc
actttagaaacatacaggaagctacacaaaggattctgctaggtgcagcc
tgagtaatctaatgtcagtcatcaatgtgggcaggggactagataagaga
ctttcttgaaaggcagcaggtaagtctaagaagcagatagacctgcagat
agattcttttgaacgagtgatctaggggtggttgtaaatggctgggagtt
atttatccaattgcaatgtgtttctgcctagaccagccatgctaagactt
ccagaactccagccctgtcttgtttttgccatttttaattggctctccta
ttgtcctccaggtagcagagctagaacctgccttgttcccttttattgaa
cctaggttaataaaactcatggacagtgactaagtgactaagactgcata
agaaggccaccatgaagaggcaggagagtgcccaaaagttttctcgatac
ttttatataccatctccacctcagacatcttccacttttatatactacaa
ccccatttgttgtttaaaactttaaaatgtcattggttagagaggtgact
tagcaccagctggcaggctggtaagtggtggactagtgacttgaactcag
atgtgtctgatccactgctgtggcctggtctccaatcacaatgtcctagg
cagagtcctgtgtgcctgggcaaggcttttgtctgtcattagtcactgac
ttcccagccaagggtagctcctttgaaacaccttctcagaccactagtga
cttgtgacttccctgtcacctctgaacagacatgaacattgactcttttt
aaaatgacatggtatttacgaagcacatgaaaaggacagcagaaaggatg
ctggagaccttggacagtgcagagatgacttatttatgtccctctcacat
ctctgctcttccagacagcttcggaattgaggagaaactcggtattgctt
tagctgggccaggcctacttttgaccgtttgcttttcttattaactctgt
ctgccctagtgacc
gaattcctagcagtcatccacatccatgctggatccccatctgtctgtgt
actgttttctcatctagatacaggaggacttcatacttcagagttcctct
cagcctattgttacccaaacaggagcatccatttacataccagaggcagg
gcatcatgctaaaagtaacactcttaataagaacaatggtgatgatgcca
tttacatagctgacagagtctgggaaaacaccagtcaccagagacactgg
gcggcactttatgttcaatctcattcagtatttatggggggcttcataag
gcagctgctattagcagctcatcttataggtgggcaagcagaggctctgt
gaggtttgctaatgaactcagaggatcagatctgaggtggatgcaggcct
gtttgattcccagctttccttcttcactggcattgtgggggtatagggag
gatgcaggtgttacttcatcatgttagcagagccttccctcaacaagcaa
ggcatgtgcaggcagtctgtagttgacctagaaggtaccacacaaggtta
cttacatctcagaagtttttgcacactgtgttctggttctacccagccag
tcaatgtgcagatggacatccaaggagcaaaatgcttatccagacagtac
agtgggactacccagagggttgggtaaacttatgcaaagtagagtgagtt
tatacaggatatatcttacacgcgttctcgcgaccggccaggaagaacgc
aacaaaccggaatcttctgcagcaaaagctttattgcttacatcttcagg
agccagagagcaagagagcaagaatagagcaagaaagcaagagcaagaaa
aggacaagaacagaaagcagagaaagatggcaaaaccccgtccctttaag
gagaattatcttcgcctagaacgtattactccctgattggctgcagccca
tcgccagttgtcatcacgagaaaggcaaacacatggcggaaaactgccct
gcacgtgtgcaatatgtttaccacttaaacccagctgtcagcgccatctt
atatgcaaatgggaggcgctctcacagatatgaggtgatgtttcctgaaa
gtgggaaactttactagaaggaagtagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5751486_5752607
seq2: B6Ng01-098E12.b_50_1163 (reverse)

seq1  GGTCACTA-GGCAGGACGAGGTAATAAGAAAAGCAAACGGTCAACAGTAG  49
      |||||||| |||||   ||| ||||||||||||||||||||||| |||||
seq2  GGTCACTAGGGCAGACAGAGTTAATAAGAAAAGCAAACGGTCAAAAGTAG  50

seq1  GCCTGGCCCAGCTAAAGCAATTACCGAGTTTCTCCTCAATTCCGAGGCTG  99
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  GCCTGGCCCAGCTAAAGCAA-TACCGAGTTTCTCCTCAATTCCGAAGCTG  99

seq1  TCTTGGGAAGAGCAGAGATGTGGAGAGGGACATAAATTATGTCATCTCTG  149
      |||  |||||||||||||||| |||||||||||||| || ||||||||||
seq2  TCT--GGAAGAGCAGAGATGT-GAGAGGGACATAAA-TAAGTCATCTCTG  145

seq1  CACTGTCCAAGGTCTCCAGCATCCCTTTCTGCTGTCCTTTTCATTGTGGC  199
      |||||||||||||||||||||| |||||||||||||||||||| ||| ||
seq2  CACTGTCCAAGGTCTCCAGCAT-CCTTTCTGCTGTCCTTTTCA-TGT-GC  192

seq1  TTCGTAAATACCATGTCATTTTTAAAAAGAGTCATTGTTCATGTCTGTTC  249
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TTCGTAAATACCATGTCA-TTTTAAAAAGAGTCAATGTTCATGTCTGTTC  241

seq1  AGAGGTGACAGGGAAGTCACAAGTCACTAGTGGTCTGAGAAGGTGTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGACAGGGAAGTCACAAGTCACTAGTGGTCTGAGAAGGTGTTTCA  291

seq1  AAGGAGCTACCCTTGGCTGGGAAGTCAGTGACTAATGACAGACAAAAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTACCCTTGGCTGGGAAGTCAGTGACTAATGACAGACAAAAGCC  341

seq1  TTGCCCAGGCACACAGGACTCTGCCTAGGACATTGTGATTGGAGACCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGGCACACAGGACTCTGCCTAGGACATTGTGATTGGAGACCAGG  391

seq1  CCACAGCAGTGGATCAGACACATCTGAGTTCAAGTCACTAGTCCACCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAGTGGATCAGACACATCTGAGTTCAAGTCACTAGTCCACCACT  441

seq1  TACCAGCCTGCCAGCTGGTGCTAAGTCACCTCTCTAACCAATGACATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCCTGCCAGCTGGTGCTAAGTCACCTCTCTAACCAATGACATTTT  491

seq1  AAAGTTTTAAACAACAAATGGGGTTGTAGTATATAAAAGTGGAAGATGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAAACAACAAATGGGGTTGTAGTATATAAAAGTGGAAGATGTC  541

seq1  TGAGGTGGAGATGGTATATAAAAGTATCGAGAAAACTTTTGGGCACTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGAGATGGTATATAAAAGTATCGAGAAAACTTTTGGGCACTCTC  591

seq1  CTGCCTCTTCATGGTGGCCTTCTTATGCAGTCTTAGTCACTTAGTCACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTTCATGGTGGCCTTCTTATGCAGTCTTAGTCACTTAGTCACTG  641

seq1  TCCATGAGTTTTATTAACCTAGGTTCAATAAAAGGGAACAAGGCAGGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGTTTTATTAACCTAGGTTCAATAAAAGGGAACAAGGCAGGTTC  691

seq1  TAGCTCTGCTACCTGGAGGACAATAGGAGAGCCAATTAAAAATGGCAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGCTACCTGGAGGACAATAGGAGAGCCAATTAAAAATGGCAAAA  741

seq1  ACAAGACAGGGCTGGAGTTCTGGAAGTCTTAGCATGGCTGGTCTAGGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAGGGCTGGAGTTCTGGAAGTCTTAGCATGGCTGGTCTAGGCAG  791

seq1  AAACACATTGCAATTGGATAAATAACTCCCAGCCATTTACAACCACCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTGCAATTGGATAAATAACTCCCAGCCATTTACAACCACCCCT  841

seq1  AGATCACTCGTTCAAAAGAATCTATCTGCAGGTCTATCTGCTTCTTAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTCGTTCAAAAGAATCTATCTGCAGGTCTATCTGCTTCTTAGAC  891

seq1  TTACCTGCTGCCTTTCAAGAAAGTCTCTTATCTAGTCCCCTGCCCACATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCTGCCTTTCAAGAAAGTCTCTTATCTAGTCCCCTGCCCACATT  941

seq1  GATGACTGACATTAGATTACTCAGGCTGCACCTAGCAGAATCCTTTGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGACATTAGATTACTCAGGCTGCACCTAGCAGAATCCTTTGTGT  991

seq1  AGCTTCCTGTATGTTTCTAAAGTGAAGCTGGCATTAAGGTGAGCCTTAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTGTATGTTTCTAAAGTGAAGCTGGCATTAAGGTGAGCCTTAGG  1041

seq1  GGCTGGAGAGATACTTGGTGTTTAAGGGTGATTGCTGTTCCTACAGAGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATACTTGGTGTTTAAGGGTGATTGCTGTTCCTACAGAGGG  1091

seq1  CCTGACTTTGGCTCCCAGAATTC  1122
      |||||||||||||||||||||||
seq2  CCTGACTTTGGCTCCCAGAATTC  1114

seq1: chr16_5579342_5580498
seq2: B6Ng01-098E12.g_66_1197

seq1  GAATTCCTAGCAGTCATCCACATCCATGCTGGATCCCCATCTGTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCAGTCATCCACATCCATGCTGGATCCCCATCTGTCTGTGT  50

seq1  ACTGTTTTCTCATCTAGATACAGGAGGACTTCATACTTCAGAGTTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCTCATCTAGATACAGGAGGACTTCATACTTCAGAGTTCCTCT  100

seq1  CAGCCTATTGTTACCCAAACAGGAGCATCCATTTACATACCAGAGGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATTGTTACCCAAACAGGAGCATCCATTTACATACCAGAGGCAGG  150

seq1  GCATCATGCTAAAAGTAACACTCTTAATAAGAACAATGGTGATGATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGCTAAAAGTAACACTCTTAATAAGAACAATGGTGATGATGCCA  200

seq1  TTTACATAGCTGACAGAGTCTGGGAAAACACCAGTCACCAGAGACACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAGCTGACAGAGTCTGGGAAAACACCAGTCACCAGAGACACTGG  250

seq1  GCGGCACTTTATGTTCAATCTCATTCAGTATTTATGGGGGGCTTCATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCACTTTATGTTCAATCTCATTCAGTATTTATGGGGGGCTTCATAAG  300

seq1  GCAGCTGCTATTAGCAGCTCATCTTATAGGTGGGCAAGCAGAGGCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCTATTAGCAGCTCATCTTATAGGTGGGCAAGCAGAGGCTCTGT  350

seq1  GAGGTTTGCTAATGAACTCAGAGGATCAGATCTGAGGTGGATGCAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGCTAATGAACTCAGAGGATCAGATCTGAGGTGGATGCAGGCCT  400

seq1  GTTTGATTCCCAGCTTTCCTTCTTCACTGGCATTGTGGGGGTATAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCCAGCTTTCCTTCTTCACTGGCATTGTGGGGGTATAGGGAG  450

seq1  GATGCAGGTGTTACTTCATCATGTTAGCAGAGCCTTCCCTCAACAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGTGTTACTTCATCATGTTAGCAGAGCCTTCCCTCAACAAGCAA  500

seq1  GGCATGTGCAGGCAGTCTGTAGTTGACCTAGAAGGTACCACACAAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGCAGGCAGTCTGTAGTTGACCTAGAAGGTACCACACAAGGTTA  550

seq1  CTTACATCTCAGAAGTTTTTGCACACTGTGTTCTGGTTCTACCCAGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATCTCAGAAGTTTTTGCACACTGTGTTCTGGTTCTACCCAGCCAG  600

seq1  TCAATGTGCAGATGGACATCCAAGGAGCAAAATGCTTATCCAGACAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGCAGATGGACATCCAAGGAGCAAAATGCTTATCCAGACAGTAC  650

seq1  AGTGGGACTACCCAGAGGGTTGGGTAAACTTATGCAAAGTAGAGTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGACTACCCAGAGGGTTGGGTAAACTTATGCAAAGTAGAGTGAGTT  700

seq1  TATACAGGATATATCTTACACGCGTTCTCGCGACCGGCCAGGAAGAACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGATATATCTTACACGCGTTCTCGCGACCGGCCAGGAAGAACGC  750

seq1  AACAAACCGGAATCTTCTGCAGCAAAAGCTTTATTGCTTACATCTTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCGGAATCTTCTGCAGCAAAAGCTTTATTGCTTACATCTTCAGG  800

seq1  AGCCAGAGAGCAAGAGAGCAAGAACAAGAGCAAGAAAGCAAGAGCAAGAA  850
      ||||||||||||||||||||||||  |||||||||||||||||||||| |
seq2  AGCCAGAGAGCAAGAGAGCAAGAA-TAGAGCAAGAAAGCAAGAGCAAG-A  848

seq1  AAAGAACAAGAACAAGAAAGCAAGAGAAAGAATGGCAAAACCCCGTCCCT  900
      |||| |||||||| ||||||| |||||||| |||||||||||||||||| 
seq2  AAAGGACAAGAAC-AGAAAGC-AGAGAAAG-ATGGCAAAACCCCGTCCC-  894

seq1  TTTAAGGAGAATTATCCTCCGCCTAGAACGTATTACTCCCTGATTGGCTG  950
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  TTTAAGGAGAATTAT-CTTCGCCTAGAACGTATTACTCCCTGATTGGCTG  943

seq1  CAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGGG  1000
      ||||||||||  |||||||||||||||||||||||| |||||||||| ||
seq2  CAGCCCATCG--CCAGTTGTCATCACGAGAAAGGCA-AACACATGGC-GG  989

seq1  AAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAGC  1050
      ||||||| ||||||||||||||  | ||||||||||||||| ||| ||||
seq2  AAAACTG-CCCTGCACGTGTGC--AATATGTTTACCACTTA-AACCCAGC  1035

seq1  TGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCCAACAGATA  1100
      ||||||||||||||||||   ||||||| ||||   |||| | |||||||
seq2  TGTCAGCGCCATCTTATA--TGCAAATGGGAGG--CGCTCTC-ACAGATA  1080

seq1  TAGAGTGAAGTTTTCCTGAAAGTGGGTAAACTTATCTAGGAAGTGAAGTG  1150
      |   |||| | ||||||||||||||| ||||||  ||| |||| ||||| 
seq2  TGAGGTGATG-TTTCCTGAAAGTGGG-AAACTTTACTA-GAAG-GAAGT-  1125

seq1  AGTTTTT  1157
      |||||||
seq2  AGTTTTT  1132