BAC Information

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BAC

Clone NameB6Ng01-100P24
Chromosome16 (Build37)8 (Build37)
Map Location 80,688,045 - 80,689,084103,184,261 - 103,184,399
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100P24.bB6Ng01-100P24.g
ACCDH910325DH910326
length1,044572
definitionDH910325|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P24, 5' end.DH910326|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,688,045 - 80,689,084)(103,184,261 - 103,184,399)
sequence
gaattctgtgcatactatagtagaacatggtaagacaaatatattttcaa
gtatgtttctgttttattcaaatatagctataaagtattctagtattcta
tggcatcttatgcacattttacttgtcttttattacaaatttctaatttc
tatgtgtttattcatgagttctagaatttatatttatgataaacaaagcc
aactcatctatttggtaaagataaatgattggtaaatacttcctaccata
aactaatagtactttatgttgaattgtttgatgaaaataaatgaaaaaaa
aaatcacctagcaaacccctgaagtaccttattttgatgactctgagaga
tttcaatcttttttttcaaataagtatcctttattgaaggaaaaaaaaaa
aaggaatattgttagtgccaaaactgcgtgttgttacattgcatgtacaa
agagaaatgtgagtgcaacactgggtgagcaagtacttaactctgaagtc
aggagtgtgaaatgtaaaaaaaaaaaaaaaaaaaaaaaggcagcaacccg
gtgcagaaaggctgcactagggagaaggcgacagtcataacagtgattgg
agattttatagtattgctataaatgcctgcttagtagtttccttatactc
ataatacttgagagtgttaattgagcatatttccatacataaatttgcaa
gagatggcatttatagtatgctatggacaatccacttaatgttgggtggg
aatgccatctgtaaatgccaagcacagtgcatagtgtgttgccttcataa
cacttcacataactaataatggtatcagtctgccattgtaatcttcattt
acccacaactatggtaaaaaagacaaaggtgtcagtttatgtagccccag
tgggttttactcatgctaactaacctgcagctttccatttctcaataaac
tacatattatggttttataccttggcaatgcataccgtccgagaagaatt
ccatcaaggcagtggcgaattgggtcaaaatcattataagaaac
atcccatatagagtcaccaaatgcagacactattgtggaagccaaaaagt
acattttgacaggaatctgatatagctgtctcctgagaggaccggccaga
acctgacaaatacagagatggatacttgcatccaaccattggactgagca
caggatccccaatggagaagttagaaaaggacagaaggcgctgaagtggt
ttgcaatcccataggaagactaacaatatcaaccaactataccccccgcc
ccagagctcccagggagtaagtcaccaaccaaggaatacagagctccagt
tgcatatgtagcagagaatggccttgtcaggcatcaaagggaggagaggt
ccttggtcctatgaagaagactcaatagatgccccagtgtaggggcatca
tcgagggcaggaagatgggagtgggtgggtgtgtagaggaacatcctcat
agaaggcggtgggagagaaaaatgggtagggagtttccagggtgggagac
tggaaaagaggataacattttgaaatgtaaataaaagaaattatctaata
aaaatagctatataaaaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80688045_80689084
seq2: B6Ng01-100P24.b_44_1087

seq1  GAATTCTGTGCATACTATAGTAGAACATGGTAAGACAAATATATTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCATACTATAGTAGAACATGGTAAGACAAATATATTTTCAA  50

seq1  GTATGTTTCTGTTTTATTCAAATATAGCTATAAAGTATTCTAGTATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTCTGTTTTATTCAAATATAGCTATAAAGTATTCTAGTATTCTA  100

seq1  TGGCATCTTATGCACATTTTACTTGTCTTTTATTACAAATTTCTAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTATGCACATTTTACTTGTCTTTTATTACAAATTTCTAATTTC  150

seq1  TATGTGTTTATTCATGAGTTCTAGAATTTATATTTATGATAAACAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTATTCATGAGTTCTAGAATTTATATTTATGATAAACAAAGCC  200

seq1  AACTCATCTATTTGGTAAAGATAAATGATTGGTAAATACTTCCTACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCTATTTGGTAAAGATAAATGATTGGTAAATACTTCCTACCATA  250

seq1  AACTAATAGTACTTTATGTTGAATTGTTTGATGAAAATAAATGAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATAGTACTTTATGTTGAATTGTTTGATGAAAATAAATGAAAAAAA  300

seq1  AAATCACCTAGCAAACCCCTGAAGTACCTTATTTTGATGACTCTGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCTAGCAAACCCCTGAAGTACCTTATTTTGATGACTCTGAGAGA  350

seq1  TTTCAATCTTTTTTTTCAAATAAGTATCCTTTATTGAAGGAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCTTTTTTTTCAAATAAGTATCCTTTATTGAAGGAAAAAAAAAA  400

seq1  AAGGAATATTGTTAGTGCCAAAACTGCGTGTTGTTACATTGCATGTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATATTGTTAGTGCCAAAACTGCGTGTTGTTACATTGCATGTACAA  450

seq1  AGAGAAATGTGAGTGCAACACTGGGTGAGCAAGTACTTAACTCTGAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGTGAGTGCAACACTGGGTGAGCAAGTACTTAACTCTGAAGTC  500

seq1  AGGAGTGTGAAATGTAAAAAAAAAAAAAAAAAAAAAAAGGCAGCAACCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTGAAATGTAAAAAAAAAAAAAAAAAAAAAAAGGCAGCAACCCG  550

seq1  GTGCAGAAAGGCTGCACTAGGGAGAAGGCGACAGTCATAACAGTGATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAAGGCTGCACTAGGGAGAAGGCGACAGTCATAACAGTGATTGG  600

seq1  AGATTTTATAGTATTGCTATAAATGCCTGCTTAGTAGTTTCCTTATACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATAGTATTGCTATAAATGCCTGCTTAGTAGTTTCCTTATACTC  650

seq1  ATAATACTTGAGAGTGTTAATTGAGCATATTTCCATACATAAATTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTTGAGAGTGTTAATTGAGCATATTTCCATACATAAATTTGCAA  700

seq1  GAGATGGCATTTATAGTATGCTATGGACAATCCACTTAATGTTGGGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCATTTATAGTATGCTATGGACAATCCACTTAATGTTGGGTGGG  750

seq1  AATGCCATCTGTAAA-GCCAAGCACAGTGCATAGTGTGTTGCCTTCATAA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATGCCATCTGTAAATGCCAAGCACAGTGCATAGTGTGTTGCCTTCATAA  800

seq1  CACTGCACAAAACTAATAATGGTATCAGTCTGCCATTGTAATCTTCATTT  849
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACATAACTAATAATGGTATCAGTCTGCCATTGTAATCTTCATTT  850

seq1  ACCCACAACTA-GGTAAAAAAGACAAAGGTGTCAGTTTATGTAGCCCCAG  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAACTATGGTAAAAAAGACAAAGGTGTCAGTTTATGTAGCCCCAG  900

seq1  TGGGTTTTACTCATGCAAACTAACCTGCAGCCTTCCATTTCTCAATAAAC  948
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TGGGTTTTACTCATGCTAACTAACCTGCAGCTTTCCATTTCTCAATAAAC  950

seq1  TACATATTATGGTTTTACA-CTTGGCAGTGCATACAGTACAGAG-AGATA  996
      ||||||||||||||||| | ||||||| ||||||| || | ||| |||  
seq2  TACATATTATGGTTTTATACCTTGGCAATGCATACCGT-CCGAGAAGAAT  999

seq1  TTCAACAAGGCAGTGGCG-ATTGTGTCAAAAACATTATAAGAAAC  1040
      | || ||||||||||||| |||| ||||||| |||||||||||||
seq2  TCCATCAAGGCAGTGGCGAATTGGGTCAAAATCATTATAAGAAAC  1044

seq1: chr8_103184261_103184399
seq2: B6Ng01-100P24.g_490_644 (reverse)

seq1  ATTTTTTTCAGTA-TTATTTTTATTAGATAATTTCTTTTTTTTAATTTTT  49
      ||||||||   ||  |||||||||||||||||||||||| ||||  ||| 
seq2  ATTTTTTTATATAGCTATTTTTATTAGATAATTTCTTTTATTTACATTTC  50

seq1  TTATTAGGTATTTAGCTCATTTACA-TTTCCAATGCTATACCAAAAGTCC  98
        | | | |||    ||| ||| || | ||| |  ||      ||| |||
seq2  AAAAT-GTTAT---CCTCTTTTCCAGTCTCCCACCCT----GGAAACTCC  92

seq1  ---CCCA---TACCCACCCACCCCC------------ACTCCCCT----A  126
         ||||   | | | |||||| ||              ||| ||    |
seq2  CTACCCATTTTTCTCTCCCACCGCCTTCTATGAGGATGTTCCTCTACACA  142

seq1  CCCACCCACTCCC  139
      |||||||||||||
seq2  CCCACCCACTCCC  155