BAC Information

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BAC

Clone NameB6Ng01-101P21
Chromosome16 (Build37)
Map Location 17,987,122 - 18,084,502
singlet/doubletdoublet
Overlap geneDgcr6, Prodh
Upstream geneMapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2
Downstream geneRtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P21.bB6Ng01-101P21.g
ACCDH911011DH911012
length1,1641,160
definitionDH911011|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P21, 5' end.DH911012|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,083,358 - 18,084,502)(17,987,122 - 17,988,293)
sequence
gaattcttgcttcctgcagacaggagcgctgtgcttttgtgggcctgcac
cagtggagggttgagggatagaactgcaaactctggccctggccatatcc
cgctccccacatagtcctgtacagtttgaggctgtagctttgaattctga
gtggttgaaaagtatcaaaacaagaactatattttttataaaaactatat
aaaattcaaattgtcttttcaatttgcaagggcagagtggtgtagtcata
catcttttaaggctgaggacatgtgctaccttccactcccagaagcattt
ggtgacccctgacttcccactacaatctgcctttctaaggaatcctgact
ggacctgcgggttccagctagttctcagacagtttcctaacctgatgatg
gctgtgcctgcagggcatagaaccttgctgactgggctcagcctggcacc
acggtaaagaggattgtagcgggcagccgtgtcatgtgacaggcagcctg
gagttccccccgctggcaccaacttgctgcaaggcccttccccaggcagc
gagctttcgcacagctcatggacctgccttcttggcagcaggacagagtg
gcctcattctgccctctggggtggtagctgacacactggaggcctaagca
aaaccagcccttttttgcaaagtgctgctgcctgtgaccctcccggacag
gccctcgcttaggttttgggtccgcagtctctggctgcagctgttcaacc
cctgtgaagcttagaacagggccgtccgtccgtgtcagacctttggcttg
ccctggctccctccccaggtaactaacaggagagttggagagggcttggc
agtcatgtgaggcactggtctctgaaaacagaaatgttcgggcctggcct
tcagcctggggagcccagcttcctgctttgttgattggtcattctgaaag
gcggggtgacccagccccagtatcccctttgtgatctcaccgatcttttg
gggagttggctgcagcctttaccaaggctgctgttgaatacccaattgga
ttcacagcttcggcctgggaagggtgagccatgagatgctctctcacccg
ggaactgcctgctgtagaatgtattgtatagtctggcgactgtccttgtc
cggactgcctgccg
gaattctttccaaagaactttctaaagggaaataggagtgccctgagtgt
tttagttcccgatgacagggaggaacaatatgtgagcagctttttagaaa
tatgaaaacaaccatctctaactgccttaatcaaaagtagccaagtatca
tatttttcagaaatataaatatatacagataagcatgtccccgactaatg
agatgtcacatgtacaaaagaaagcacagtggtatctccagaaacagcca
ttgcagttgttagatttcagaacatgggaccagcattgctaacacaaggg
gaagtttcagtcattcacagaggcttgtccctaccccaggctctggtgcc
tacacatacttgctcaaagacttgcaggagatgcacaccaacatgcacac
atatatgtgtaaatacagatccatttatgtgggcatgctaggacatatgt
tatgttcagaagttcagagagtatttctccatctcctacctcagcacagg
cccaaacctataccagacaggcttagaattgtttgtttacatggcataga
aagccacacacattgtggagactatactttgaatttttagttttaatgtt
tctattgtgtggcctgaacctcttatagtgcagaagaattgtgaattgta
gctcccagccaatcttacaatcatgaaggagacataccagtactgcagag
taggatgctgcagttgggtggacagatgaaatcccttttctatctacaaa
ttatcagaatgtagccacgctgtttactccaaacactgcagagtatctgc
aggaattttgtcaaaactctggttctgctgagtcatggggtcagcacatg
atggagggcatagacattgggttctgctgagtcatggggtcagcacatga
tggaaggcaatagacattggttctgctgagtcatggggtcagcacatgat
ggaggtcataaacattagttctgctgagtcatggggtcagcacatgatgg
agcatagaattggtgaagaaggtcagcttcagagcctttgcaattccacc
agaccccttctcttctgggagagaaagtaatagagccatatgcactcttc
ctctggaaagttggggaattaatcatctcaacactgcgaaagtacatctg
ctaactgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18083358_18084502
seq2: B6Ng01-101P21.b_50_1213 (reverse)

seq1  CGGCAGGCAGTCCGG-------CAG--GCC------TACCATTCATTCTC  35
      |||||||||||||||       |||  |||      ||| || |||||| 
seq2  CGGCAGGCAGTCCGGACAAGGACAGTCGCCAGACTATACAATACATTCT-  49

seq1  ACAGCAAGGCAG-TCCCGGGT--GAGAGCA-CTCAGTGCTCACCCTTTCC  81
      ||||| |||||| ||||||||  ||||||| ||||  |||||||||| ||
seq2  ACAGC-AGGCAGTTCCCGGGTGAGAGAGCATCTCATGGCTCACCCTTCCC  98

seq1  AGGCCGAGGCTGTGGAATCCATTTGGTTATTCAACAGCAGCCTTGGTAAA  131
      ||||||| ||||| ||||||| |||| |||||||||||||||||||||||
seq2  AGGCCGAAGCTGT-GAATCCAATTGGGTATTCAACAGCAGCCTTGGTAAA  147

seq1  GGCTTGCAGCCAACTCCCCAAAGCATCGGTGAGGATCAC-AAGGGGATAC  180
      ||| ||||||||||||||||||  |||||||| |||||| ||||||||||
seq2  GGC-TGCAGCCAACTCCCCAAAAGATCGGTGA-GATCACAAAGGGGATAC  195

seq1  TGGGGCTGGGTCACCCCGCC-TTCAGAATGGCCAATC-ACAAAGCAGGGA  228
      |||||||||||||||||||| ||||||||| |||||| |||||||||| |
seq2  TGGGGCTGGGTCACCCCGCCTTTCAGAATGACCAATCAACAAAGCAGGAA  245

seq1  GCTGGGCTCCCCAGGCTG-AGGCCAGGCCCGAACA-TTCTGTTCTCAG-G  275
      |||||||||||||||||| |||||||||||||||| ||||||| |||| |
seq2  GCTGGGCTCCCCAGGCTGAAGGCCAGGCCCGAACATTTCTGTTTTCAGAG  295

seq1  GCCAGTGGCCTCACATGACTGCCAAGCCCTCTCCAACTCCTCCTGTTAGT  325
       ||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCAGT-GCCTCACATGACTGCCAAGCCCTCTCCAACT-CTCCTGTTAGT  343

seq1  TACCTGGGGA-GGAGCCAGGGCAAGCCAAAGGTCTGACACGGACGGACGG  374
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGGAGGGAGCCAGGGCAAGCCAAAGGTCTGACACGGACGGACGG  393

seq1  CCCTGTTCTAAGCTTCACAGGGGTTGAACAGCTGCAGCCAGAGACTGCGG  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTAAGCTTCACAGGGGTTGAACAGCTGCAGCCAGAGACTGCGG  443

seq1  ACCCAAAACCTAAGCGAGGGCCTGTCCGGGAGGGTCACAGGCAGCAGCAC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAACCTAAGCGAGGGCCTGTCCGGGAGGGTCACAGGCAGCAGCAC  493

seq1  TTTGCAAAAAAGGGCTGGTTTTGCTTAGGCCTCCAGTGTGTCAGCTACCA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAAAAGGGCTGGTTTTGCTTAGGCCTCCAGTGTGTCAGCTACCA  543

seq1  CCCCAGAGGGCAGAATGAGGCCACTCTGTCCTGCTGCCAAGAAGGCAGGT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGGGCAGAATGAGGCCACTCTGTCCTGCTGCCAAGAAGGCAGGT  593

seq1  CCATGAGCTGTGCGAAAGCTCGCTGCCTGGGGAAGGGCCTTGCAGCAAGT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGCTGTGCGAAAGCTCGCTGCCTGGGGAAGGGCCTTGCAGCAAGT  643

seq1  TGGTGCCAGCGGGGGGAACTCCAGGCTGCCTGTCACATGACACGGCTGCC  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCAGCGGGGGGAACTCCAGGCTGCCTGTCACATGACACGGCTGCC  693

seq1  CGCTACAATCCTCTTTACCGTGGTGCCAGGCTGAGCCCAGTCAGCAAGGT  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACAATCCTCTTTACCGTGGTGCCAGGCTGAGCCCAGTCAGCAAGGT  743

seq1  TCTATGCCCTGCAGGCACAGCCATCATCAGGTTAGGAAACTGTCTGAGAA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCCTGCAGGCACAGCCATCATCAGGTTAGGAAACTGTCTGAGAA  793

seq1  CTAGCTGGAACCCGCAGGTCCAGTCAGGATTCCTTAGAAAGGCAGATTGT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGGAACCCGCAGGTCCAGTCAGGATTCCTTAGAAAGGCAGATTGT  843

seq1  AGTGGGAAGTCAGGGGTCACCAAATGCTTCTGGGAGTGGAAGGTAGCACA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGTCAGGGGTCACCAAATGCTTCTGGGAGTGGAAGGTAGCACA  893

seq1  TGTCCTCAGCCTTAAAAGATGTATGACTACACCACTCTGCCCTTGCAAAT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGCCTTAAAAGATGTATGACTACACCACTCTGCCCTTGCAAAT  943

seq1  TGAAAAGACAATTTGAATTTTATATAGTTTTTATAAAAAATATAGTTCTT  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGACAATTTGAATTTTATATAGTTTTTATAAAAAATATAGTTCTT  993

seq1  GTTTTGATACTTTTCAACCACTCAGAATTCAAAGCTACAGCCTCAAACTG  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATACTTTTCAACCACTCAGAATTCAAAGCTACAGCCTCAAACTG  1043

seq1  TACAGGACTATGTGGGGAGCGGGATATGGCCAGGGCCAGAGTTTGCAGTT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGACTATGTGGGGAGCGGGATATGGCCAGGGCCAGAGTTTGCAGTT  1093

seq1  CTATCCCTCAACCCTCCACTGGTGCAGGCCCACAAAAGCACAGCGCTCCT  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTCAACCCTCCACTGGTGCAGGCCCACAAAAGCACAGCGCTCCT  1143

seq1  GTCTGCAGGAAGCAAGAATTC  1145
      |||||||||||||||||||||
seq2  GTCTGCAGGAAGCAAGAATTC  1164

seq1: chr16_17987122_17988293
seq2: B6Ng01-101P21.g_69_1228

seq1  GAATTCTTTCCAAAGAACTTTCTAAAGGGAAATAGGAGTGCCCTGAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAAAGAACTTTCTAAAGGGAAATAGGAGTGCCCTGAGTGT  50

seq1  TTTAGTTCCCGATGACAGGGAGGAACAATATGTGAGCAGCTTTTTAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCCCGATGACAGGGAGGAACAATATGTGAGCAGCTTTTTAGAAA  100

seq1  TATGAAAACAACCATCTCTAACTGCCTTAATCAAAAGTAGCCAAGTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACAACCATCTCTAACTGCCTTAATCAAAAGTAGCCAAGTATCA  150

seq1  TATTTTTCAGAAATATAAATATATACAGATAAGCATGTCCCCGACTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCAGAAATATAAATATATACAGATAAGCATGTCCCCGACTAATG  200

seq1  AGATGTCACATGTACAAAAGAAAGCACAGTGGTATCTCCAGAAACAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCACATGTACAAAAGAAAGCACAGTGGTATCTCCAGAAACAGCCA  250

seq1  TTGCAGTTGTTAGATTTCAGAACATGGGACCAGCATTGCTAACACAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTGTTAGATTTCAGAACATGGGACCAGCATTGCTAACACAAGGG  300

seq1  GAAGTTTCAGTCATTCACAGAGGCTTGTCCCTACCCCAGGCTCTGGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCAGTCATTCACAGAGGCTTGTCCCTACCCCAGGCTCTGGTGCC  350

seq1  TACACATACTTGCTCAAAGACTTGCAGGAGATGCACACCAACATGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACTTGCTCAAAGACTTGCAGGAGATGCACACCAACATGCACAC  400

seq1  ATATATGTGTAAATACAGATCCATTTATGTGGGCATGCTAGGACATATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTAAATACAGATCCATTTATGTGGGCATGCTAGGACATATGT  450

seq1  TATGTTCAGAAGTTCAGAGAGTATTTCTCCATCTCCTACCTCAGCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGAAGTTCAGAGAGTATTTCTCCATCTCCTACCTCAGCACAGG  500

seq1  CCCAAACCTATACCAGACAGGCTTAGAATTGTTTGTTTACATGGCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCTATACCAGACAGGCTTAGAATTGTTTGTTTACATGGCATAGA  550

seq1  AAGCCACACACATTGTGGAGACTATACTTTGAATTTTTAGTTTTAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACACACATTGTGGAGACTATACTTTGAATTTTTAGTTTTAATGTT  600

seq1  TCTATTGTGTGGCCTGAACCTCTTATAGTGCAGAAGAATTGTGAATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTGTGGCCTGAACCTCTTATAGTGCAGAAGAATTGTGAATTGTA  650

seq1  GCTCCCAGCCAATCTTACAATCATGAAGGAGACATACCAGTACTGCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGCCAATCTTACAATCATGAAGGAGACATACCAGTACTGCAGAG  700

seq1  TAGGATGCTGCAGTTGGGTGGACAGATGAAATCCCTTTTCTATCTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGCTGCAGTTGGGTGGACAGATGAAATCCCTTTTCTATCTACAAA  750

seq1  TTATCAGAATGTAGCCACGCTGTTTACTCCAAACACTGCAGAGTATCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAATGTAGCCACGCTGTTTACTCCAAACACTGCAGAGTATCTGC  800

seq1  AGGAATTTTGTCAAAACTCTGGTTCTGCTGAGTCATGGGGTCAGCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTGTCAAAACTCTGGTTCTGCTGAGTCATGGGGTCAGCACATG  850

seq1  ATGGAGGGCATAGACATT-GGTTCTGCTGAGTCATGGGGTCAGCACATGA  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGGAGGGCATAGACATTGGGTTCTGCTGAGTCATGGGGTCAGCACATGA  900

seq1  TGGAAGGC-ATAGACATTGGTTCTGCTGAGTCATGGGGTCAGCACATGAT  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCAATAGACATTGGTTCTGCTGAGTCATGGGGTCAGCACATGAT  950

seq1  GGAGGTCATAAACATTAGTTCTGCTGAGTCATGGGGTCAGCACATGATGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCATAAACATTAGTTCTGCTGAGTCATGGGGTCAGCACATGATGG  1000

seq1  AAGGCATAGACATTGGTGAAG-AGGTCAGCTCAGGAGCTTTGGCAAATCC  1047
      |  ||||||| |||||||||| |||||||||   |||| || || ||| |
seq2  A--GCATAGA-ATTGGTGAAGAAGGTCAGCTTCAGAGCCTTTGC-AATTC  1046

seq1  CACCAGACCCCTCCCCTCCTGGGAGAGAAAGGTAATAGAGCACATAGGCA  1097
      |||||||||||| | || |||||||||||| |||||||||| |||| |||
seq2  CACCAGACCCCTTCTCTTCTGGGAGAGAAA-GTAATAGAGC-CATATGCA  1094

seq1  CCCCTTCCCTCTGGAAGGTTGGGGGATTAATTACATTCCTCAGACCACAG  1147
      | |  | ||||||||| ||||||| ||||||  |||  |||  | ||| |
seq2  CTC--TTCCTCTGGAAAGTTGGGGAATTAAT--CAT--CTC--AACACTG  1136

seq1  GGAAATGACCATCTGCTACCTGTGG  1172
       |||| |  ||||||||| ||||||
seq2  CGAAA-GTACATCTGCTAACTGTGG  1160