BAC Information

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BAC

Clone NameB6Ng01-104H13
Chromosome16 (Build37)
Map Location 8,580,776 - 8,715,338
singlet/doubletdoublet
Overlap geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7
Upstream gene4930511J11Rik, BC024814
Downstream geneLOC665231, 1810013L24Rik, LOC100043106, Grin2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H13.bB6Ng01-104H13.g
ACCDH912761DH912762
length6421,103
definitionDH912761|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H13, 5' end.DH912762|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,580,776 - 8,581,381)(8,714,237 - 8,715,338)
sequence
gaattcatacattaaataaagtttgaacatattataatataagttatatg
tgtaaataatataattatgtaacgtctctatgtgtatatgtgtatttatg
agaacatgagttggcacatggctgacagaggtacctgccacaaagcccga
tgccctgggattaaatctcaggaatccatagggtggaaggaaagagctaa
ctcctgcaaattgtcttctgaccttagcatgtgtagtgtggtggctatat
acccacccacaaacaaaataaaataaataaaaatgtaaaataaacctaga
gctagcgatgtagctcaatgtagagcgcttgcccagaataagcaagaccg
tgagctctaactgcagcaccacaaaaaagaaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaagaaaagaaagaaagaaagagggct
ggtgagatggctcagtgggtaagagcacccgactgctcttccaaaggcct
ggagttcaaatcccagcaaccacatggtggctcacaaccatccgtaacaa
gatctgacgccctcttctggtttgtctgaagacagctatagtgtacttac
atataataaataaaaaaaaaaaaaaaaaaaaaaaagaaagat

gaattcttagtactaagtactcatgctttatcacaatacctaagagtagc
agtggcccagcttgtcttttccaggttgggaaagcagagcggccagcggt
cctcttggtttgcagttggaagtgtcttcagcaaggcctgggcctgggcc
tgggtctatttacagcatggcagaggcaagggagggtggggctctgtttc
tggagcagatcttagggtgagcttttccggaagtaatgtgactctgaacc
gctggtgtaggttgtatgtgtcatgtggccaggtcagaaccttgggaaat
tcgaggagttctgcattacccatgcctcagctgtcccttagaaaccctgg
ggttttcttaatgatcccttagactctggctttgaacccctttacttaga
tctttttaaaatatatcaaactaggacacatgatctagaaaacattggat
cgaggccaatttgtaatcatatgatctgtgactttattgcgctcagggtt
cttagaggcgtctctcgtgtgagaacttgggtagcttggcagtgcagaca
ttagtggaggacactgcagatattagtggaggacacgtgtagttgaggaa
aagagcatatttttaaaatgcctgttaacagactaatggggtgggcaggt
ggtagagcctctttgttatcatatttctcatttcatcaagtactgcttgt
ccttagatgagaggttttagagcaaacacatgggctatgaggacctagat
aaagctgtgttaagttgtaggtgtctagaaacaacctatttcttaagagt
aacagacttgtaaaatttgtattagaataactagtatgtcagaaggtttg
agaagacatccctctagagtcactatatggagaaattagtcccttcaaaa
cctgaagtgtcctgtctgtgtgtttctctacagagttgaggccagggcag
tccactcagagtttttaagtggatctaactcccactcccatgtgccactg
tattcattcttgggcagagaacctttgtcagattgtcagtctcgagaatt
ccctttaaggaagaataatcagccaggctaattaagtactgtggataggt
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_8580776_8581381
seq2: B6Ng01-104H13.b_42_647

seq1  GAATTCATACATTAAATAAAGTTTGAACATATTATAATATAAGTTATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACATTAAATAAAGTTTGAACATATTATAATATAAGTTATATG  50

seq1  TGTAAATAATATAATTATGTAACGTCTCTATGTGTATATGTGTATTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAATATAATTATGTAACGTCTCTATGTGTATATGTGTATTTATG  100

seq1  AGAACATGAGTTGGCACATGGCTGACAGAGGTACCTGCCACAAAGCCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGAGTTGGCACATGGCTGACAGAGGTACCTGCCACAAAGCCCGA  150

seq1  TGCCCTGGGATTAAATCTCAGGAATCCATAGGGTGGAAGGAAAGAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGGATTAAATCTCAGGAATCCATAGGGTGGAAGGAAAGAGCTAA  200

seq1  CTCCTGCAAATTGTCTTCTGACCTTAGCATGTGTAGTGTGGTGGCTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAAATTGTCTTCTGACCTTAGCATGTGTAGTGTGGTGGCTATAT  250

seq1  ACCCACCCACAAACAAAATAAAATAAATAAAAATGTAAAATAAACCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCACAAACAAAATAAAATAAATAAAAATGTAAAATAAACCTAGA  300

seq1  GCTAGCGATGTAGCTCAATGTAGAGCGCTTGCCCAGAATAAGCAAGACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCGATGTAGCTCAATGTAGAGCGCTTGCCCAGAATAAGCAAGACCG  350

seq1  TGAGCTCTAACTGCAGCACCACAAAAAAGAAAGGAAGGAAGGAAGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTAACTGCAGCACCACAAAAAAGAAAGGAAGGAAGGAAGGAAGG  400

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAGAAAGAAAGAAAGAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAGAAAGAAAGAAAGAGGGCT  450

seq1  GGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGCCT  500

seq1  GGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAA  550

seq1  GATCTGACGCCCTCTTCTGGTTTGTCTGAAGACAGCTATAGTGTACTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACGCCCTCTTCTGGTTTGTCTGAAGACAGCTATAGTGTACTTAC  600

seq1  ATATAA  606
      ||||||
seq2  ATATAA  606


seq1: chr16_8714237_8715338
seq2: B6Ng01-104H13.g_69_1171 (reverse)

seq1  GAAACCTATCCACAGTACTAAATTAGCCT-GCTGATTATCCT--CCTAAA  47
      ||||||||||||||||||| ||||||||| ||||||||| ||  | ||||
seq2  GAAACCTATCCACAGTACTTAATTAGCCTGGCTGATTATTCTTCCTTAAA  50

seq1  GGGAATTCCTCGAGACTGACCAATCTGAC-AAGGGTCTCTGCCCAAGAAT  96
      ||||||| ||||||||||| ||||||||| |||| |||||||||||||||
seq2  GGGAATT-CTCGAGACTGA-CAATCTGACAAAGGTTCTCTGCCCAAGAAT  98

seq1  GAATACAGTGGCACATGGGAGTGGGAGTTAGATCCACTTAAAAACTCTGA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGTGGCACATGGGAGTGGGAGTTAGATCCACTTAAAAACTCTGA  148

seq1  GTGGACTGCCCTGGCCTCAACTCTGTAGAGAAAGCACACAGACAGGACAC  196
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGGACTGCCCTGGCCTCAACTCTGTAGAGAAA-CACACAGACAGGACAC  197

seq1  TTCAGGTTTTGAAGGGACTAATTTCTCCATATAGTGACTCTAGAGGGATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTTGAAGGGACTAATTTCTCCATATAGTGACTCTAGAGGGATG  247

seq1  TCTTCTCAAACCTTCTGACATACTAGTTATTCTAATACAAATTTTACAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAAACCTTCTGACATACTAGTTATTCTAATACAAATTTTACAAG  297

seq1  TCTGTTACTCTTAAGAAATAGGTTGTTTCTAGACACCTACAACTTAACAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTCTTAAGAAATAGGTTGTTTCTAGACACCTACAACTTAACAC  347

seq1  AGCTTTATCTAGGTCCTCATAGCCCATGTGTTTGCTCTAAAACCTCTCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATCTAGGTCCTCATAGCCCATGTGTTTGCTCTAAAACCTCTCAT  397

seq1  CTAAGGACAAGCAGTACTTGATGAAATGAGAAATATGATAACAAAGAGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGACAAGCAGTACTTGATGAAATGAGAAATATGATAACAAAGAGGC  447

seq1  TCTACCACCTGCCCACCCCATTAGTCTGTTAACAGGCATTTTAAAAATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACCTGCCCACCCCATTAGTCTGTTAACAGGCATTTTAAAAATAT  497

seq1  GCTCTTTTCCTCAACTACACGTGTCCTCCACTAATATCTGCAGTGTCCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTCCTCAACTACACGTGTCCTCCACTAATATCTGCAGTGTCCTC  547

seq1  CACTAATGTCTGCACTGCCAAGCTACCCAAGTTCTCACACGAGAGACGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGTCTGCACTGCCAAGCTACCCAAGTTCTCACACGAGAGACGCC  597

seq1  TCTAAGAACCCTGAGCGCAATAAAGTCACAGATCATATGATTACAAATTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAACCCTGAGCGCAATAAAGTCACAGATCATATGATTACAAATTG  647

seq1  GCCTCGATCCAATGTTTTCTAGATCATGTGTCCTAGTTTGATATATTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGATCCAATGTTTTCTAGATCATGTGTCCTAGTTTGATATATTTTA  697

seq1  AAAAGATCTAAGTAAAGGGGTTCAAAGCCAGAGTCTAAGGGATCATTAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTAAGTAAAGGGGTTCAAAGCCAGAGTCTAAGGGATCATTAAG  747

seq1  AAAACCCCAGGGTTTCTAAGGGACAGCTGAGGCATGGGTAATGCAGAACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCAGGGTTTCTAAGGGACAGCTGAGGCATGGGTAATGCAGAACT  797

seq1  CCTCGAATTTCCCAAGGTTCTGACCTGGCCACATGACACATACAACCTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAATTTCCCAAGGTTCTGACCTGGCCACATGACACATACAACCTAC  847

seq1  ACCAGCGGTTCAGAGTCACATTACTTCCGGAAAAGCTCACCCTAAGATCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCGGTTCAGAGTCACATTACTTCCGGAAAAGCTCACCCTAAGATCT  897

seq1  GCTCCAGAAACAGAGCCCCACCCTCCCTTGCCTCTGCCATGCTGTAAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAAACAGAGCCCCACCCTCCCTTGCCTCTGCCATGCTGTAAATA  947

seq1  GACCCAGGCCCAGGCCCAGGCCTTGCTGAAGACACTTCCAACTGCAAACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGCCCAGGCCCAGGCCTTGCTGAAGACACTTCCAACTGCAAACC  997

seq1  AAGAGGACCGCTGGCCGCTCTGCTTTCCCAACCTGGAAAAGACAAGCTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACCGCTGGCCGCTCTGCTTTCCCAACCTGGAAAAGACAAGCTGG  1047

seq1  GCCACTGCTACTCTTAGGTATTGTGATAAAGCATGAGTACTTAGTACTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCTACTCTTAGGTATTGTGATAAAGCATGAGTACTTAGTACTAA  1097

seq1  GAATTC  1102
      ||||||
seq2  GAATTC  1103


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