BAC Information

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BAC

Clone NameB6Ng01-105K10
Chromosome16 (Build37)
Map Location 30,507,792 - 30,608,090
singlet/doubletdoublet
Overlap geneTmem44, Lsg1, BC022623
Upstream geneAtp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
Downstream geneLOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105K10.bB6Ng01-105K10.g
ACCDH913612DH913613
length1,119852
definitionDH913612|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K10, 5' end.DH913613|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,507,792 - 30,508,965)(30,607,239 - 30,608,090)
sequence
gaattcaactagtaaaattaaacctagagattcatgtcaggacaaaagat
aatccactcaggtacaagcccaaatgatttcaaggtaatttaaatgtgct
cttcagttgcagttttctttctttcatgtttaggtgcactctcactatat
aactctagctggcctagaactcaccatgcatgccagactggccttatatt
cacagacccaccggcctttgccccctgagaatcagaactaaaggtgtaca
ccaacacacctggcatgctttatgggtttttttttaaagtttaatgcaaa
atatcatgtcttcattgaagtacaattgttaatcttccctattaggtaat
tttgcatcctaccccaaagtgctaaggattgagccaggggttcattccga
gtagcttaagagggattatctggtgaagtatgactattcctatagtcccc
aaactcgggtgactgagacagaagaactgacttccaagctagcctgactg
atatagaaagccacaggcccagctattcagcaagatcctgtggcacaaac
aaacaagtgaaaaatgtcctgagaatacagtgtctctcagggtccctagg
ttgcctgtaagacaatcatttgagaagctagaatcacacagccctgtcca
gacctaggaaatcatcagggacgatgttcagagctgtaactgagtatcgg
aacttcagggaatacacattcactaagaagtgcaagccagccgggcgtgg
tggtgcacacctttaatcccagcactcgggaggcagaggcaggaggattt
ctgagctcgaggacagcctggtctacaaagtgagtacaaggacagccagg
gctatatagagaaaccctgtctcgaaaatcaaaaaaaaaaaaagaagaga
gagagaagagagagagagatatagagagagagataagaggaaaaaaatag
aggaaagagaaagaaaaattgtgcagctatctaagcctcagaactgagaa
ctgctctttcatatgcagacaggcatcttgggaaatacaggtggtgacag
gtctgtgaacttctgtttggttgtggcctaaaggatcctgggcctggccg
gaggctccatgtactggac
gaattcagctgaaagattggtgccttttgaaatgtggcatctggtgttac
agaaacatttgtaatgttatgagtactccctgcaccaaaacatttcttac
tgcccacaatggttccctatcctggttcctgcaatccccttattattaga
aaaggatccaggacatatactaagcttaaggaggccaaatggggtgcttt
aacagttgttaggggtggggagagggcttatctctgaaaacaagcagctg
gcacctgttccccaggctgtgggactctctcgtttaccttctgcagggct
ctagaagaggattatatggcgtcttggaaagagactgggggcaaaattgt
gccctgagtcctaatctaagctctgctccacatgagcttccagtgacatg
tgtttaaaaatccttcttggcctcggtttccccatttataaaataaaggg
atcaaagcctgaagttctgtgtggctttcaatcagaattagaaagaagcg
aggtccctggcaatgaacctaggcccttgccagccataattggctcattt
tggacttccaaccagagaatccattgttctggggaaagagatggaagggg
ataaggatcctggcgaggtgaggtctgctactagggtgaagcatctctaa
gacagtcagttcctgagtcttgcctcgggtggggacttgggctctgttgt
tacaaagcacccagccaccagatgccctggtggtccttgatggcatgcac
aggctttgctaaatgtcctcagacaaaaatttcatctacttacaaactaa
tgtatccatcacactctaatattcagtgtctaaacctacattcaggagac
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30507792_30508965
seq2: B6Ng01-105K10.b_41_1159

seq1  GAATTCAACTAGTAAAATTAAACCTAGAGATTCATGTCAGGACAAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAGTAAAATTAAACCTAGAGATTCATGTCAGGACAAAAGAT  50

seq1  AATCCACTCAGGTACAAGCCCAAATGATTTCAAGGTAATTTAAATGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTCAGGTACAAGCCCAAATGATTTCAAGGTAATTTAAATGTGCT  100

seq1  CTTCAGTTGCAGTTTTCTTTCTTTCATGTTTAGGTGCACTCTCACTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGCAGTTTTCTTTCTTTCATGTTTAGGTGCACTCTCACTATAT  150

seq1  AACTCTAGCTGGCCTAGAACTCACCATGCATGCCAGACTGGCCTTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGCTGGCCTAGAACTCACCATGCATGCCAGACTGGCCTTATATT  200

seq1  CACAGACCCACCGGCCTTTGCCCCCTGAGAATCAGAACTAAAGGTGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCCACCGGCCTTTGCCCCCTGAGAATCAGAACTAAAGGTGTACA  250

seq1  CCAACACACCTGGCATGCTTTATGGGTTTTTTTTTAAAGTTTAATGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACACCTGGCATGCTTTATGGGTTTTTTTTTAAAGTTTAATGCAAA  300

seq1  ATATCATGTCTTCATTGAAGTACAATTGTTAATCTTCCCTATTAGGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGTCTTCATTGAAGTACAATTGTTAATCTTCCCTATTAGGTAAT  350

seq1  TTTGCATCCTACCCCAAAGTGCTAAGGATTGAGCCAGGGGTTCATTCCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCCTACCCCAAAGTGCTAAGGATTGAGCCAGGGGTTCATTCCGA  400

seq1  GTAGCTTAAGAGGGATTATCTGGTGAAGTATGACTATTCCTATAGTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTAAGAGGGATTATCTGGTGAAGTATGACTATTCCTATAGTCCCC  450

seq1  AAACTCGGGTGACTGAGACAGAAGAACTGACTTCCAAGCTAGCCTGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGGTGACTGAGACAGAAGAACTGACTTCCAAGCTAGCCTGACTG  500

seq1  ATATAGAAAGCCACAGGCCCAGCTATTCAGCAAGATCCTGTGGCACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAAGCCACAGGCCCAGCTATTCAGCAAGATCCTGTGGCACAAAC  550

seq1  AAACAAGTGAAAAATGTCCTGAGAATACAGTGTCTCTCAGGGTCCCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTGAAAAATGTCCTGAGAATACAGTGTCTCTCAGGGTCCCTAGG  600

seq1  TTGCCTGTAAGACAATCATTTGAGAAGCTAGAATCACACAGCCCTGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTAAGACAATCATTTGAGAAGCTAGAATCACACAGCCCTGTCCA  650

seq1  GACCTAGGAAATCATCAGGGACGATGTTCAGAGCTGTAACTGAGTATCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGGAAATCATCAGGGACGATGTTCAGAGCTGTAACTGAGTATCGG  700

seq1  AACTTCAGGGAATACACATTCACTAAGAAGTGCAAGCCAGCCGGGCGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGGGAATACACATTCACTAAGAAGTGCAAGCCAGCCGGGCGTGG  750

seq1  TGGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTT  800

seq1  CTGAGCTCGAGGACAGCCTGGTCTACAAAGTGAGTACCAGGACAGCCAGG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGAGCTCGAGGACAGCCTGGTCTACAAAGTGAGTACAAGGACAGCCAGG  850

seq1  GCTATATAGAGAAACCCTGTCTCGAAAAATCAAAAAAAAAAAAAAAAAGA  900
      |||||||||||||||||||||||| |||||||||||||||||        
seq2  GCTATATAGAGAAACCCTGTCTCG-AAAATCAAAAAAAAAAA--------  891

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  950
                                |||||| |||   ||||||   ||
seq2  --------------------------AAGAAG-AGAGAGAGAAGA--GAG  912

seq1  AAGAAGAAGAAGAAGGAGA-AGAAGAAGAAGAAGAAGGAGAAGAAGGAGA  999
      |   |||   |||  |||| | |||| ||  || ||  ||| ||| ||||
seq2  AGAGAGATATAGAGAGAGAGATAAGAGGA--AAAAAATAGAGGAAAGAGA  960

seq1  AGAAGAAGAAGTGGTGCAAGCTAGTCAGAGCCTCCAGAACCTGAGAACTG  1049
        ||||| || | |||| ||||| ||  ||||| ||||| ||||||||| 
seq2  --AAGAA-AAATTGTGC-AGCTA-TCTAAGCCT-CAGAA-CTGAGAACT-  1002

seq1  GCTCTTGTCATATGCAGCCAGGCATCCTGGGACATCAGGGTGGTGACAAG  1099
      |||||| |||||||||| |||||||| ||||| ||   ||||||||||  
seq2  GCTCTT-TCATATGCAGACAGGCATCTTGGGAAATACAGGTGGTGACA--  1049

seq1  TGTCTGTGAGCTTCTGTTTTGGTTGTGGCCTTAGAGGATCCCCTGGCTTG  1149
       |||||||| |||||| ||||||||||||| || ||||| ||  ||| ||
seq2  GGTCTGTGAACTTCTG-TTTGGTTGTGGCC-TAAAGGAT-CCTGGGCCTG  1096

seq1  CACGGAAAGGCTCCATGTACTGGAC  1174
        |||  ||||||||||||||||||
seq2  GCCGG--AGGCTCCATGTACTGGAC  1119

seq1: chr16_30607239_30608090
seq2: B6Ng01-105K10.g_71_922 (reverse)

seq1  TCGTCTCCTGACTGTGGGTTTTAGACACTGCATATTTAGAGTGTGATGGA  50
      ||||||||||| ||| || ||||||||||| ||| |||||||||||||||
seq2  TCGTCTCCTGAATGTAGG-TTTAGACACTGAATA-TTAGAGTGTGATGGA  48

seq1  TACATTAGTTTGTAAGTAGCTG-AATTTTTGTCTGAGGACATTTAGCAAA  99
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  TACATTAGTTTGTAAGTAGATGAAATTTTTGTCTGAGGACATTTAGCAAA  98

seq1  GCCTGTGCATGCCATCAAGGACCACCAGGGCATCTGGTGGCTGGGTGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCATGCCATCAAGGACCACCAGGGCATCTGGTGGCTGGGTGCTT  148

seq1  TGTAACAACAGAGCCCAAGT-CCCACCCGAGGCAAGACTCAGGAACTGAC  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTAACAACAGAGCCCAAGTCCCCACCCGAGGCAAGACTCAGGAACTGAC  198

seq1  TGTCTTAGAGATGCTTCACCCTAGTAGCAGACCTCACCTCGCCAGGATCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGAGATGCTTCACCCTAGTAGCAGACCTCACCTCGCCAGGATCC  248

seq1  TTATCCCCTTCCATCTCTTTCCCCAGAACAATGGATTCTCTGGTTGGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCTTCCATCTCTTTCCCCAGAACAATGGATTCTCTGGTTGGAAG  298

seq1  TCCAAAATGAGCCAATTATGGCTGGCAAGGGCCTAGGTTCATTGCCAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATGAGCCAATTATGGCTGGCAAGGGCCTAGGTTCATTGCCAGGG  348

seq1  ACCTCGCTTCTTTCTAATTCTGATTGAGAGCCACACAGAACTTCAGGCTT  398
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCTCGCTTCTTTCTAATTCTGATTGAAAGCCACACAGAACTTCAGGCTT  398

seq1  TGATCCCTTTATTTTATAAATGGGGAAACCGAGGCCAAGAAGGATTTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTTTATTTTATAAATGGGGAAACCGAGGCCAAGAAGGATTTTTA  448

seq1  AACACATGTCACTGGAAGCTCATGTGGAGCAGAGCTTAGATTAGGACTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGTCACTGGAAGCTCATGTGGAGCAGAGCTTAGATTAGGACTCA  498

seq1  GGGCACAATTTTGCCCCCAGTCTCTTTCCAAGACGCCATATAATCCTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAATTTTGCCCCCAGTCTCTTTCCAAGACGCCATATAATCCTCTT  548

seq1  CTAGAGCCCTGCAGAAGGTAAACGAGAGAGTCCCACAGCCTGGGGAACAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCCCTGCAGAAGGTAAACGAGAGAGTCCCACAGCCTGGGGAACAG  598

seq1  GTGCCAGCTGCTTGTTTTCAGAGATAAGCCCTCTCCCCACCCCTAACAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGCTGCTTGTTTTCAGAGATAAGCCCTCTCCCCACCCCTAACAAC  648

seq1  TGTTAAAGCACCCCATTTGGCCTCCTTAAGCTTAGTATATGTCCTGGATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGCACCCCATTTGGCCTCCTTAAGCTTAGTATATGTCCTGGATC  698

seq1  CTTTTCTAATAATAAGGGGATTGCAGGAACCAGGATAGGGAACCATTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAATAATAAGGGGATTGCAGGAACCAGGATAGGGAACCATTGTG  748

seq1  GGCAGTAAGAAATGTTTTGGTGCAGGGAGTACTCATAACATTACAAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAAGAAATGTTTTGGTGCAGGGAGTACTCATAACATTACAAATGT  798

seq1  TTCTGTAACACCAGATGCCACATTTCAAAAGGCACCAATCTTTCAGCTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAACACCAGATGCCACATTTCAAAAGGCACCAATCTTTCAGCTGA  848

seq1  ATTC  852
      ||||
seq2  ATTC  852