BAC Information

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BAC

Clone NameB6Ng01-106H02
Chromosome16 (Build37)
Map Location 73,125,764 - 73,257,051
singlet/doubletdoublet
Overlap geneLOC100039310, LOC100039318
Upstream geneRobo1
Downstream geneLOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106H02.bB6Ng01-106H02.g
ACCDH914183DH914184
length1,2101,121
definitionDH914183|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H02, 5' end.DH914184|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,255,868 - 73,257,051)(73,125,764 - 73,126,907)
sequence
gaattcatctgctatattggctttacaaacttacctcatcacaacaacag
caacaacttcccatctaaacatatgtccacatcttttacattaattcaaa
tttcaccatttttattaaaaatatttcatgtgctatttgttgttcttctt
tcttgtatattgttgattatctttcatggccatcttgcaatacatctacc
tctatcttaaaagcaatgatgttgttgttgctcctgttattgttattgtt
gttgttgtaagaaccctactataagtggacctaattgaaagagtgcagaa
acacaaaagtgtgtatttaataagggtctcatgaactccgataaaccttt
ctagaaagttctggatgattttctcactaattaaagtcaaatatggaaac
gtgctgaggggtaacaagacctgtgctgacaaagccgtgtaaagtgctgc
tctcttcacagataaagaaaatattgtcattgatttttttttcttttgtg
ccattaccaaccctggtagaccgtgggcaaatgaaccaacagaaggcatg
agtgaagctcttgctcagcagagggaaaaaaataatttaattttgcaaat
gatttaaaaatataacaagcatcaaaatcagagttgaatctagtgacttt
ttataagcttattttctgaaaagtgcagtgtggatgagatgctacacatt
gctattatatagcttttaccccagaaaacaccacaaaatgtcatctgaga
gcagagccccaacatgcttgctatcttgtcttttaactgtataaattata
tactgggaatttgacataaaggaaagattttcagtgttgtagcagaacac
gattttaaatgtcaaaaaacccttggaggatttggtaacaagagcccatt
tagcacaaaatatcccatgtccagctgggccactgagaagttgctcatta
ttggaaagcagaaaattatagaagtggaatgcaggtgcttaggagatccg
cttggtattgtagagggggagagaattaatttttgatttatggtgatata
acaaatgtatttaacagtgcttaccctgaaacgcatttgctcccagttat
cgccttaaaatattctccaaccatagaataccacaacccttctatcagaa
tttcccgggaaatgccttggccttttgtaacaacctcgaaaagaaaaaaa
tgatattgtg
gaattcttaaattagagcgtcttggatgtagaatcccagtatggaaacta
ttttaagttgtgccatttcggtccgatgtggccatactcttgctgctact
cgattagggttactaatggagtctcagggaagggcaggcattgtcctcag
ttgtttgcccattgatggacaggcacaccatgtttcaactgacagttcaa
atctgggatcgcacagatggccttggttaaactctgtggatcacaaagca
gagcacaaagaagtattaaagagacccataaagaagatgaagatgatggt
ggtaggagaaagataagagagaaaatgaagtatatgcatatttttatttt
tgactaacacatttaataaaagatttctaaaagttgccagttgctgtttt
gttgtaaagttcaaatagggttaaaatcgctggagagcagatttgttctc
ccactgctgccacgttaggccctatgtctttttcgttggtctgtctttcc
tggtcgtgtgtcatcacaggataagggtttatatcgatagcagtcctcaa
aaaggagatttagttctactaaatagatcctgacttcagtcacaacaagg
agaaacagaagttaccccatgtgctatgccctattttaacttgttacata
ggtaacaaaatgatgtagggagttcaagtttgatttaaaaaaaattatct
tctttataaagaatttgccagggacaattgagaattcaggcaacttttct
aggtttcactagaatctgaagtctttctgttaggcttctggataaccctt
atggttggcttggcttccttcctttggaatggaaaggcatttgcatgcct
ccaggcacggctgctatgcacaagaaatggagttaagaattgaagactaa
gatacaatttgctaaacacatgaaactcaagagaatgagactgaatgtgg
acactatgcccctcttagaatggacaacacccatgggaagagttacagag
acaagtttggagctgagatgaaagatgaccatgtaagactgcatatcagg
aatccacccaattcagcatccaacgctgactcatgcaatacactagcaga
attatcgaaggacccgatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73255868_73257051
seq2: B6Ng01-106H02.b_35_1244 (reverse)

seq1  CACACATATCATTTT----CTTTCGAGGTTGTT-CAAAAG--CAAAGC-T  42
      |||| ||||||||||     ||||||||||||| ||||||  ||| || |
seq2  CACA-ATATCATTTTTTTCTTTTCGAGGTTGTTACAAAAGGCCAAGGCAT  49

seq1  TTCTCGGGAAATACTGATAGAA-GGTTGTGGTA-TCTAT-GTTGGTGAAT  89
      ||| |||||||| ||||||||| |||||||||| ||||| ||||| ||||
seq2  TTCCCGGGAAATTCTGATAGAAGGGTTGTGGTATTCTATGGTTGGAGAAT  99

seq1  ATTTTAAGCTGATAACTGGTAGAAAATGCG-TTCAGGCT-AGCACTGTT-  136
      ||||||||  ||||||||| || ||||||| |||||| | ||||||||| 
seq2  ATTTTAAGGCGATAACTGGGAGCAAATGCGTTTCAGGGTAAGCACTGTTA  149

seq1  AATTCATTT-CTATATCA-CATAAATC-AAAGTTATCTCT-TCCCCCTCT  182
      ||| |||||  ||||||| |||||||| ||| |||  ||| |||||||||
seq2  AATACATTTGTTATATCACCATAAATCAAAAATTAATTCTCTCCCCCTCT  199

seq1  GACAATACC-AGCGGATCTCCTAAGCACCTGCATT-CACTTCTTATATTT  230
       |||||||| ||||||||||||||||||||||||| |||||||   ||||
seq2  -ACAATACCAAGCGGATCTCCTAAGCACCTGCATTCCACTTCTATAATTT  248

seq1  TCTGCTTCTCATTAATGAGC-ACTTCTCAGT-GCACAGCTGAACATGGGA  278
      |||||||  || |||||||| |||||||||| || |||||| ||||||||
seq2  TCTGCTTTCCAATAATGAGCAACTTCTCAGTGGCCCAGCTGGACATGGGA  298

seq1  TATTTTGTGCTGAAT-GGCTCTTGTTACCAAATCCTCCAAGGGTTTTTTG  327
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGCTAAATGGGCTCTTGTTACCAAATCCTCCAAGGGTTTTTTG  348

seq1  ACATTTAAAATCGTGTTCTGCTACAACACTG-AAATCTTTCCTTTATGTC  376
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATTTAAAATCGTGTTCTGCTACAACACTGAAAATCTTTCCTTTATGTC  398

seq1  AAATTCCCAGTATATAAATTATACAGTTAAAAGACAAGATAGC-AGCATG  425
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  AAATTCCCAGTATATAATTTATACAGTTAAAAGACAAGATAGCAAGCATG  448

seq1  TTGGGGCTCTGCTCTCAGATGACATTTTGTGGTGTTTTCTGGGGT-AAAG  474
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGGGGCTCTGCTCTCAGATGACATTTTGTGGTGTTTTCTGGGGTAAAAG  498

seq1  CTATATAATAGCAATGTGTAGCATCTCATCCACACTGCAC-TTTCAGAAA  523
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTATATAATAGCAATGTGTAGCATCTCATCCACACTGCACTTTTCAGAAA  548

seq1  ATAAGCTTATAAAAAGTCACTAGATTCAACTCTGA-TTTGATGCTTGTTA  572
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAAGCTTATAAAAAGTCACTAGATTCAACTCTGATTTTGATGCTTGTTA  598

seq1  TATTTTTAAATCATTTGCAAAATTAAATTATTTTTTTCCCTCTGCTGAGC  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATCATTTGCAAAATTAAATTATTTTTTTCCCTCTGCTGAGC  648

seq1  AAGAGCTTCACTCATGCCTTCTGTTGGTTCATTTGCCCACGGTCTACCAG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTCACTCATGCCTTCTGTTGGTTCATTTGCCCACGGTCTACCAG  698

seq1  GGTTGGTAATGGCACAAAAGAAAAAAAAATCAATGACAATATTTTCTTTA  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTAATGGCACAAAAGAAAAAAAAATCAATGACAATATTTTCTTTA  748

seq1  TCTGTGAAGAGAGCAGCACTTTACACGGCTTTGTCAGCACAGGTCTTGTT  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGAGAGCAGCACTTTACACGGCTTTGTCAGCACAGGTCTTGTT  798

seq1  ACCCCTCAGCACGTTTCCATATTTGACTTTAATTAGTGAGAAAATCATCC  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCAGCACGTTTCCATATTTGACTTTAATTAGTGAGAAAATCATCC  848

seq1  AGAACTTTCTAGAAAGGTTTATCGGAGTTCATGAGACCCTTATTAAATAC  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCTAGAAAGGTTTATCGGAGTTCATGAGACCCTTATTAAATAC  898

seq1  ACACTTTTGTGTTTCTGCACTCTTTCAATTAGGTCCACTTATAGTAGGGT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTGTGTTTCTGCACTCTTTCAATTAGGTCCACTTATAGTAGGGT  948

seq1  TCTTACAACAACAACAATAACAATAACAGGAGCAACAACAACATCATTGC  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAACAACAACAATAACAATAACAGGAGCAACAACAACATCATTGC  998

seq1  TTTTAAGATAGAGGTAGATGTATTGCAAGATGGCCATGAAAGATAATCAA  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATAGAGGTAGATGTATTGCAAGATGGCCATGAAAGATAATCAA  1048

seq1  CAATATACAAGAAAGAAGAACAACAAATAGCACATGAAATATTTTTAATA  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACAAGAAAGAAGAACAACAAATAGCACATGAAATATTTTTAATA  1098

seq1  AAAATGGTGAAATTTGAATTAATGTAAAAGATGTGGACATATGTTTAGAT  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTGAAATTTGAATTAATGTAAAAGATGTGGACATATGTTTAGAT  1148

seq1  GGGAAGTTGTTGCTGTTGTTGTGATGAGGTAAGTTTGTAAAGCCAATATA  1172
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTGTTGCTGTTGTTGTGATGAGGTAAGTTTGTAAAGCCAATATA  1198

seq1  GCAGATGAATTC  1184
      ||||||||||||
seq2  GCAGATGAATTC  1210

seq1: chr16_73125764_73126907
seq2: B6Ng01-106H02.g_67_1187

seq1  GAATTCTTAAATTAGAGCGTCTTGGATGTAGAATCCCAGTATGGAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATTAGAGCGTCTTGGATGTAGAATCCCAGTATGGAAACTA  50

seq1  TTTTAAGTTGTGCCATTTCGGTCCGATGTGGCCATACTCTTGCTGCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTGTGCCATTTCGGTCCGATGTGGCCATACTCTTGCTGCTACT  100

seq1  CGATTAGGGTTACTAATGGAGTCTCAGGGAAGGGCAGGCATTGTCCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTAGGGTTACTAATGGAGTCTCAGGGAAGGGCAGGCATTGTCCTCAG  150

seq1  TTGTTTGCCCATTGATGGACAGGCACACCATGTTTCAACTGACAGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCCCATTGATGGACAGGCACACCATGTTTCAACTGACAGTTCAA  200

seq1  ATCTGGGATCGCACAGATGGCCTTGGTTAAACTCTGTGGATCACAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGATCGCACAGATGGCCTTGGTTAAACTCTGTGGATCACAAAGCA  250

seq1  GAGCACAAAGAAGTATTAAAGAGACCCATAAAGAAGATGAAGATGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAAAGAAGTATTAAAGAGACCCATAAAGAAGATGAAGATGATGGT  300

seq1  GGTAGGAGAAAGATAAGAGAGAAAATGAAGTATATGCATATTTTTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGAAAGATAAGAGAGAAAATGAAGTATATGCATATTTTTATTTT  350

seq1  TGACTAACACATTTAATAAAAGATTTCTAAAAGTTGCCAGTTGCTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACACATTTAATAAAAGATTTCTAAAAGTTGCCAGTTGCTGTTTT  400

seq1  GTTGTAAAGTTCAAATAGGGTTAAAATCGCTGGAGAGCAGATTTGTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAAGTTCAAATAGGGTTAAAATCGCTGGAGAGCAGATTTGTTCTC  450

seq1  CCACTGCTGCCACGTTAGGCCCTATGTCTTTTTCGTTGGTCTGTCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTGCCACGTTAGGCCCTATGTCTTTTTCGTTGGTCTGTCTTTCC  500

seq1  TGGTCGTGTGTCATCACAGGATAAGGGTTTATATCGATAGCAGTCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGTGTGTCATCACAGGATAAGGGTTTATATCGATAGCAGTCCTCAA  550

seq1  AAAGGAGATTTAGTTCTACTAAATAGATCCTGACTTCAGTCACAACAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGATTTAGTTCTACTAAATAGATCCTGACTTCAGTCACAACAAGG  600

seq1  AGAAACAGAAGTTACCCCATGTGCTATGCCCTATTTTAACTTGTTACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAAGTTACCCCATGTGCTATGCCCTATTTTAACTTGTTACATA  650

seq1  GGTAACAAAATGATGTAGGGAGTTCAAGTTTGATTTAAAAAAAATTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACAAAATGATGTAGGGAGTTCAAGTTTGATTTAAAAAAAATTATCT  700

seq1  TCTTTATAAAGAATTTGCCAGGGACAATTGAGAATTCAGGCAACTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAAGAATTTGCCAGGGACAATTGAGAATTCAGGCAACTTTTCT  750

seq1  AGGTTTCACTAGAATCTGAAGTCTTTCTGTTAGGCTTCTGGATAACCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCACTAGAATCTGAAGTCTTTCTGTTAGGCTTCTGGATAACCCTT  800

seq1  ATGGTTGGCTTGGCTTCCTTCCTTTGGAATGG-AAGGCATTTGCATGCCT  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGGTTGGCTTGGCTTCCTTCCTTTGGAATGGAAAGGCATTTGCATGCCT  850

seq1  CCAGGCACGGCTGCTATGCACAAGAAAATGGAGTTAAGAATTGAAGACTA  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGGCACGGCTGCTATGCACAAG-AAATGGAGTTAAGAATTGAAGACTA  899

seq1  AGATACAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAAT  949
      |||||||||||||||||||||||||||||||| |||||| |||||| |||
seq2  AGATACAATTTGCTAAACACATGAAACTCAAG-AGAATG-AGACTG-AAT  946

seq1  GTGGACACTATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAAG  999
      ||||||||||||||||| |||||||| |     | ||||||||||| |||
seq2  GTGGACACTATGCCCCT-CTTAGAATGG-----ACAACACCCATGGGAAG  990

seq1  AGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGA  1049
      |||||||||||| ||||||||||||||||||||| ||| ||||||||| |
seq2  AGTTACAGAGAC-AAGTTTGGAGCTGAGATGAAA-GAT-GACCATGTA-A  1036

seq1  GACTGCCATATCCAGGGATCCACCCCATATTCAGCATCCAAACGCTGACA  1099
      ||||| ||||| |||| ||||||||   ||||||||||| ||||||||| 
seq2  GACTG-CATAT-CAGGAATCCACCC--AATTCAGCATCC-AACGCTGAC-  1080

seq1  CCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTA  1144
       |||   |||||||||||  |  |||||| |||||||| ||||||
seq2  TCATGCAATACACTAGCAGAA--TTATCG-AAGGACCC-GATGTA  1121