BAC Information

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BAC

Clone NameB6Ng01-106O20
Chromosome16 (Build37)
Map Location 55,599,599 - 55,600,107
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106O20.bB6Ng01-106O20.g
ACCDH914531DH914532
length910180
definitionDH914531|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O20, 5' end.DH914532|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggggggagggtatgggggacttttgggatagcattgtaaatgtaattgag
gaaaatacataataaaaaaaattttaaaaaaagaaaagtaagtttttcat
atcctcccatctatttccctttccctccattttccttctgaagaacttgt
gatgctactgattcttgaataatgtaaggtttgttggggtcctgcatctg
ccccaccacagggctagggccacttggagaggaaggacatgggagtgtga
tgccccttagccctctctgttaaattgaggatgttggactatggggaagc
tgtgggacaccattctgcaggtggaagaccacagtctgaagtcatgggac
aactagagatgccttgggggtccccgggcctttgacaaggacttggccat
ataattctcaggctgttggacacccaggcaccatagaaatctgaaaaaga
gttgagaacagactgggtcccccacactggatctatcctggtgccttagg
acaagtcagggagctctggctgtgacctgaggggagagtccttgacttgt
ctgctgctagctttgctttgccatctctggggacacacagtggccttcca
caggagattagattcccaaatctttaggagaaggcccctgttgctcccca
tggcagatcataatgaaaagaggcagtccattgttttaagacattttttt
tgtcatggcagaaagtagatgagtaaaaactgtataccagttctcagggc
aggcctgagttaaattcctttttcagggaggagtgtctgggaagaaagct
taattggctaagccctgtaggcctttaggtacctcattaaaatggagatc
tattgaggctacaagacctgtgatcacatcctttatttgtggaggggatt
ggggctttgc
cagggccagaaagtgggagtgagtgtgttgggaagcagggggaggggagg
ggatagaaattttggagggaaaactaggaaatgggacaagatttgaaatg
taaataaagaaaatatctaataaaaataaatagaaaaaaatctgaaagca
gaaaacctataattcagaggaatataatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55599599_55600107
seq2: B6Ng01-106O20.g_106_228

seq1  GAAGCAGGGGGAGGGAGTATGGGATAGGGGGTTCCCGGAAAGGGTCAGGG  50
      ||||||||||||||  | | |||||||    ||   ||  ||||  |   
seq2  GAAGCAGGGGGAGG--GGAGGGGATAGAAATTT--TGG--AGGGAAA---  41

seq1  ACCAGGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATA  100
      || |||||| |||| || ||||||||||||||||||||||||||||||||
seq2  ACTAGGAAATGGGACAAGATTTGAAATGTAAATAAAGAAAATATCTAATA  91

seq1  AAAA-AATAAGAAAGGAA--GGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  147
      |||| ||  |||||  ||   ||| | || ||                  
seq2  AAAATAAATAGAAAAAAATCTGAAAGCAGAAA------------------  123

seq1  AAGGAAGGAAGGAAGGAAGGAGAGGGAGAGAAAGAGAGAAAGAAAGAAAG  197
                                                        
seq2  --------------------------------------------------  123

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  247
                                                        
seq2  --------------------------------------------------  123

seq1  AGAAAGAAAAGTTATTGTTGTATATTTAGACTCCAGTGTTAAGCAATGTT  297
                                                        
seq2  --------------------------------------------------  123

seq1  TTATACAGCACATATATCCATTAACCTCATCAGCTCTGATATTTGGCTTC  347
                                                        
seq2  --------------------------------------------------  123

seq1  TTGAGATGAAACAATGTGTAAAACTGGATCTTCATCACCCTAAATTGAAC  397
                                                        
seq2  --------------------------------------------------  123

seq1  CCAAATGTATCTTTGGAAGGAGCATGCATCAAGTTTCCTTGCAGACTTCC  447
                                                        
seq2  --------------------------------------------------  123

seq1  ATGTGCTGACAGGCAGACCTGAACTCACAGTGACTGGTGAATCAGAAATC  497
                                                        
seq2  --------------------------------------------------  123

seq1  TGAAAGCAGAAA  509
                  
seq2  ------------  123