BAC Information

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BAC

Clone NameB6Ng01-107N24
Chromosome16 (Build37)7 (Build37)
Map Location 37,935,120 - 37,935,42097,290,847 - 97,291,883
singlet/doubletsingletsinglet
Overlap geneGpr156, LOC100043271
Upstream geneHcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58
Downstream geneLOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N24.bB6Ng01-107N24.g
ACCDH915214DH915215
length1721,021
definitionDH915214|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N24, 5' end.DH915215|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,935,120 - 37,935,420)(97,290,847 - 97,291,883)
sequence
caagggcaccaggtacccatgtggtacatgcaaaacactcacatacatta
aattaattacaagaggggagagagagggagagaagggacagagagagaga
gagagagagagagagagagagagagagagagagagagagaaagagagaga
gagcattaagtgtgctcctctt
gaattccgtgcagcagaaaagaaggtatagacatgtaggtaggaaaactg
cagcagtgtttatgttaacaggtgctttgttgagaagtgggattctaagg
gtcaaaatatagctgaagtcattgacttaaggccagattgtggaaggagt
tgaattttaacaacacacttttcgtcagaggttattgctcaggagttttg
gtcagattgcactgttgttggagctactgtgtcttctcttttgccagtct
gaagatgggagcagaaggctttgcttgctttgaaagctaaatgttatctt
ctacttttgcttactacaagtgtaagctactagattgtgacctcgagcct
tcgttttttgtttctttgagacagaactatgtagctgaagttggcctgct
aatttttatatttagcccagtctggcctcagactcctgaatattggaatt
ataggtggctcctctaagctagactatttcgtttttagacagagtttttc
actgtttgcccaagcgggtctcaaatttgggatttccccttcctcagcct
tccaactggtagaataactatcacaactctgggccagacttttaaatttt
gagtagttccaatgtctgtatttatatagtattattttattacattattg
tactataaactatcatttaaatttttatgttactttattactatagatta
ttattaataatacagtgataagtactcaggtttgaggggtatttgtcttt
caggtgaatgggatcattgaagaagaacaacaaaaggcttaatatctatc
taattttgacctaaatgtagatccctccctttcttccttctggtttgggt
tgtttttttttttttttttttttttgactaggttttagatgtagccacat
accctgtttcctgagtgctgagtttaaggcatgtaccactatgtcaagct
taaagttgttaagtttaagaaacttcatattacacgagtggattgaatta
ttagttagattcggtacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37935120_37935420
seq2: B6Ng01-107N24.b_117_210 (reverse)

seq1  TGCTCTCTCTCTTTCTCTCTCTGTATTTTTCCTTTCTAAAGATTTGTTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTATGTATACAATAGTCTGCCTGCATGTATGCCTCTGCACACCAGAAGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGCACCAAATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AATTGAATTCAGGATCTCTGGAAGAACAGCCAGTTGTTCTTAACTGCTGA  200
                                                  |||   
seq2  --------------------------------------------TGC---  3

seq1  GCCATCTCTCCAGCTCTTTTACAATCTCTCTCTCTCTCTCTCTCTCTCTC  250
          |||||    |||| || |  ||||||||||||||||||||||||||
seq2  ----TCTCT----CTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  45

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCTCTC  300
      ||||||||||||||||||||| || || |||||||||||||||||| |||
seq2  TCTCTCTCTCTCTCTCTCTCTGTCCCT-TCTCTCCCTCTCTCTCCC-CTC  93

seq1  T  301
      |
seq2  T  94

seq1: chr7_97290847_97291883
seq2: B6Ng01-107N24.g_67_1087

seq1  GAATTCCGTGCAGCAGAAAAGAAGGTATAGACATGTAGGTAGGAAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGCAGCAGAAAAGAAGGTATAGACATGTAGGTAGGAAAACTG  50

seq1  CAGCAGTGTTTATGTTAACAGGTGCTTTGTTGAGAAGTGGGATTCTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGTTTATGTTAACAGGTGCTTTGTTGAGAAGTGGGATTCTAAGG  100

seq1  GTCAAAATATAGCTGAAGTCATTGACTTAAGGCCAGATTGTGGAAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATATAGCTGAAGTCATTGACTTAAGGCCAGATTGTGGAAGGAGT  150

seq1  TGAATTTTAACAACACACTTTTCGTCAGAGGTTATTGCTCAGGAGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAACAACACACTTTTCGTCAGAGGTTATTGCTCAGGAGTTTTG  200

seq1  GTCAGATTGCACTGTTGTTGGAGCTACTGTGTCTTCTCTTTTGCCAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATTGCACTGTTGTTGGAGCTACTGTGTCTTCTCTTTTGCCAGTCT  250

seq1  GAAGATGGGAGCAGAAGGCTTTGCTTGCTTTGAAAGCTAAATGTTATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGGAGCAGAAGGCTTTGCTTGCTTTGAAAGCTAAATGTTATCTT  300

seq1  CTACTTTTGCTTACTACAAGTGTAAGCTACTAGATTGTGACCTCGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTGCTTACTACAAGTGTAAGCTACTAGATTGTGACCTCGAGCCT  350

seq1  TCGTTTTTTGTTTCTTTGAGACAGAACTATGTAGCTGAAGTTGGCCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTTTGTTTCTTTGAGACAGAACTATGTAGCTGAAGTTGGCCTGCT  400

seq1  AATTTTTATATTTAGCCCAGTCTGGCCTCAGACTCCTGAATATTGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATATTTAGCCCAGTCTGGCCTCAGACTCCTGAATATTGGAATT  450

seq1  ATAGGTGGCTCCTCTAAGCTAGACTATTTCGTTTTTAGACAGAGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGGCTCCTCTAAGCTAGACTATTTCGTTTTTAGACAGAGTTTTTC  500

seq1  ACTGTTTGCCCAAGCGGGTCTCAAATTTGGGATTTCCCCTTCCTCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCCCAAGCGGGTCTCAAATTTGGGATTTCCCCTTCCTCAGCCT  550

seq1  TCCAACTGGTAGAATAACTATCACAACTCTGGGCCAGACTTTTAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGGTAGAATAACTATCACAACTCTGGGCCAGACTTTTAAATTTT  600

seq1  GAGTAGTTCCAATGTCTGTATTTATATAGTATTATTTTATTACATTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTCCAATGTCTGTATTTATATAGTATTATTTTATTACATTATTG  650

seq1  TACTATAAACTATCATTTAAATTTTTATGTTACTTTATTACTATAGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAACTATCATTTAAATTTTTATGTTACTTTATTACTATAGATTA  700

seq1  TTATTAATAATACAGTGATAAGTACTCAGGTTTGAGGGGTATTTGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATAATACAGTGATAAGTACTCAGGTTTGAGGGGTATTTGTCTTT  750

seq1  CAGGTGAATGGGATCATTGAAGAAGAACAACAAAAGGCTTAATATCTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAATGGGATCATTGAAGAAGAACAACAAAAGGCTTAATATCTATC  800

seq1  TAATTTTGACCTAAATGTAGATCCCTCCCTTTCTTCCTTCTGGTTTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TAATTTTGACCTAAATGTAGATCCCTCCCTTTCTTCCTTCTGGTTTGG--  848

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTGACTAGGTTTTAGTATGTAGCCC  900
       || |||||||||||||||||||||||||||||||||||| |||||| ||
seq2  GTTGTTTTTTTTTTTTTTTTTTTTTTTGACTAGGTTTTAG-ATGTAG-CC  896

seq1  ACATA-CCTGTTTCCTGAGTGCTGAGTTTAAAGGCATGTACCACTATGTC  949
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATACCCTGTTTCCTGAGTGCTGAGTTT-AAGGCATGTACCACTATGTC  945

seq1  AAGCTAAAAGTTTGTTAAAAGTTTAAGAAAACTTCAATATTACACAGAGT  999
      ||||| |||| |||||  ||||||||| ||||||| ||||||||| ||| 
seq2  AAGCTTAAAG-TTGTT--AAGTTTAAG-AAACTTC-ATATTACAC-GAG-  988

seq1  TGGATGAAATTAATTTAGTTAGGATACAGTGTACACAG  1037
      |||||  |||||  ||||||| ||| |   ||||||||
seq2  TGGATTGAATTA--TTAGTTA-GATTC--GGTACACAG  1021