BAC Information

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BAC

Clone NameB6Ng01-109F15
Chromosome16 (Build37)
Map Location 88,056,103 - 88,057,165
singlet/doubletsinglet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109F15.bB6Ng01-109F15.g
ACCDH916282DH916283
length1,0081,054
definitionDH916282|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F15, 5' end.DH916283|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatattatttcaattcttcctttatttcttccatgaacaagtta
tcactgagcagagagttgtttagcttccatgggtgtgtgtgctttctgtt
ctttttgttgttattgaagtctagccttagtccttggtgatctgatagaa
tgcatgggatttttcaaatcttcttgtatctgtttgaggcttgttttatg
tccaaatgtatggtcaaatttggaaatctttcatgaggtgctaagaagaa
agtatattcttttgtttgggggtgaaatgttctgtagatatctgctaaac
ccatttggttcctaacttctgttcatttcacagtgtctctgttcagtttc
tatttctatgatctgaccattggtgaaaatggggtgttgaagtctcccac
tattattgtgtgaggttcaatgtgttctttgagttctagtaatgtttctt
ttacagatgtgggtgcccttgcatttggggcatagatattcagaattgag
agttcatcttggtggattttcctttgataagtgcccttccccatcttttt
tgataacttttagttgaatgtcaaatttttttggatattagaatggctat
tccatcttgtttcgtcagaccattttcttggaaattgtttccagcctttt
taatctgaggtagtgtctgtcttttgtcactgaggtgggttttctgcatg
cggcaaaatgctggggtttgcctacacatccagtctgttagcctgtgtct
ttttattggggaattgagtccattgatgttgagagatgttaaagacagat
gagtgttaattctggttatttttgttgctgggaggtgctaattatgtttt
gttctgattcttttcttttgggttttgtttgaaactggtttagtcttttg
tgatttaattggggtgtagttgccctccgtgttggagatttgttcagtat
cctctgtagggctggattagtataagatataagtttgatttgtcctggga
ttctgctt
gaattcagattgcattgatcagtgatgttggggaccaggaattcctatca
cccatttgcactaagatgcccactttgaaaaagggtgagaaagagaaaag
gtgacccatgcagcagacttatcacccaaggaagctaggaaaacagttac
ctcttcgggaggcttcaaaactatcaaaaagattaattctctggatgtca
taggttaatgtggtattgggcatcaaggttcggtttcggttaatactggt
gactgcaaacttgaaagctaattcttcaacattaacaggttcgttttcca
cagtttcaaaaatccctcctgcagaagtaaaagagatgcataagaaacgt
tagacgggatgctatggcactgttttaaaagaagactgtaagctgcaaac
aaaaatacccaaaccataaatactgggatgaccaaggtagatacagaaac
caggctgaattaagatgtggtacatgcaaatacatagttctttctgcata
tgtatgcacgatgttttagatcccatactggatgcataatgcctcttaga
tggtataaatagattccaaatattgcataccacagaggcatagctgataa
tgcagtagaaaacatctttctccaacttttacaagagttgtgctgtgttt
gatctagacataacttaaactctattctggtaggcactcctgccttggaa
ttacaacttttctattgcaaacagagtttttaggagctggggtaataact
cagcagttgaggacaggtgtacggctcttctagaggacccaggatcagtt
gccagaacccacactagtctgctcattaccgcttgaaagccagcatccgg
aacacatgatttgctggcagcctgcactcatgagcatcccgaacccacat
tcatgtgcacccccacccacacactcatgcgcatgtctcacactcatgaa
caccaccccaccctcatgtgcatcctaccccactcatgtgtacccccacc
ctactctgtgttattcccccacacactggtgcatacactgtgtcacacct
catg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88056103_88057165
seq2: B6Ng01-109F15.g_68_1121

seq1  GAATTCAGATCGCATTGATCAGTGATGTTGGGGACCAGGAATTCCTATCA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTGCATTGATCAGTGATGTTGGGGACCAGGAATTCCTATCA  50

seq1  CCCATTTGCACTAAGATGCCCACTTTGAAAAAGGGTGAGAAAGAGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGCACTAAGATGCCCACTTTGAAAAAGGGTGAGAAAGAGAAAAG  100

seq1  GTGACCCATGCAGCAGACTTATCACCCAAGGAAGCTAGGAAAACAGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCATGCAGCAGACTTATCACCCAAGGAAGCTAGGAAAACAGTTAC  150

seq1  CTCTTCGGGAGGCTTCAAAACTATCAAAAAGATTAATTCTCTGGATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGGGAGGCTTCAAAACTATCAAAAAGATTAATTCTCTGGATGTCA  200

seq1  TAGGTTAATGTGGTATTGGGCATCAAGGTTCGGTTTCGGTTAATACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAATGTGGTATTGGGCATCAAGGTTCGGTTTCGGTTAATACTGGT  250

seq1  GACTGCAAACTTGAAAGCTAATTCTTCAACATTAACAGGTTCGTTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAAACTTGAAAGCTAATTCTTCAACATTAACAGGTTCGTTTTCCA  300

seq1  CAGTTTCAAAAATCCCTCCTGCAGAAGTAAAAGAGATGCATAAGAAACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAAAAATCCCTCCTGCAGAAGTAAAAGAGATGCATAAGAAACGT  350

seq1  TAGACGGGATGCTATGGCACTGTTTTAAAAGAAGACTGTAAGCTGCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGGGATGCTATGGCACTGTTTTAAAAGAAGACTGTAAGCTGCAAAC  400

seq1  AAAAATACCCAAACCATAAATACTGGGATGACCAAGGTAGATACAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACCCAAACCATAAATACTGGGATGACCAAGGTAGATACAGAAAC  450

seq1  CAGGCTGAATTAAGATGTGGTACATGCAAATACATAGTTCTTTCTGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAATTAAGATGTGGTACATGCAAATACATAGTTCTTTCTGCATA  500

seq1  TGTATGCACGATGTTTTAGATCCCATACTGGATGCATAATGCCTCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACGATGTTTTAGATCCCATACTGGATGCATAATGCCTCTTAGA  550

seq1  TGGTATAAATAGATTCCAAATATTGCATACCACAGAGGCATAGCTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAAATAGATTCCAAATATTGCATACCACAGAGGCATAGCTGATAA  600

seq1  TGCAGTAGAAAACATCTTTCTCCAACTTTTACAAGAGTTGTGCTGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGAAAACATCTTTCTCCAACTTTTACAAGAGTTGTGCTGTGTTT  650

seq1  GATCTAGACATAACTTAAACTCTATTCTGGTAGGCACTCCTGCCTTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGACATAACTTAAACTCTATTCTGGTAGGCACTCCTGCCTTGGAA  700

seq1  TTACAACTTTTCTATTGCAAACAGAGTTTTTAGGAGCTGGGGTAATAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTTTTCTATTGCAAACAGAGTTTTTAGGAGCTGGGGTAATAACT  750

seq1  CAGCAGTTGAGGACAGGTGTACGGCTCTTCTAGAGGACCCAGGATCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTGAGGACAGGTGTACGGCTCTTCTAGAGGACCCAGGATCAGTT  800

seq1  GCCAGAACCCACACTAGTCTGCTCATAACCGCTTGAAAGCCAGCATCCGG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCAGAACCCACACTAGTCTGCTCATTACCGCTTGAAAGCCAGCATCCGG  850

seq1  AACACATGATTTGCTGGCAGCCTGCACTCATGAGCATCCCGAACCCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACACATGATTTGCTGGCAGCCTGCACTCATGAGCATCCCGAA-CCCACA  899

seq1  TTCATGTGCACCCCCACCCACACACTCATGCGCATGTCCTCCACACTCAT  950
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTCATGTGCACCCCCACCCACACACTCATGCGCATGTC--TCACACTCAT  947

seq1  GAACACCCACCCCCACCCTCATGTGCATCCCTACCCCCACCTCATGTGTA  1000
      |||||||   |||||||||||||||||| ||||||||   ||||||||||
seq2  GAACACC--ACCCCACCCTCATGTGCAT-CCTACCCC--ACTCATGTGTA  992

seq1  CCCCCACCCCTACTCTCGTG-TATACCCCCACACACTGTGTGCATAACAC  1049
      |||||| ||||||||| ||| ||| ||||||||||||| |||||| ||||
seq2  CCCCCA-CCCTACTCT-GTGTTATTCCCCCACACACTG-GTGCAT-ACAC  1038

seq1  TGT-TCACA-CTCATG  1063
      ||| ||||| ||||||
seq2  TGTGTCACACCTCATG  1054