BAC Information

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BAC

Clone NameB6Ng01-110B05
Chromosome5 (Build37)16 (Build37)
Map Location 67,583,804 - 67,584,99541,616,674 - 41,617,191
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
Downstream geneTmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110B05.bB6Ng01-110B05.g
ACCDH916803DH916804
length1,177959
definitionDH916803|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B05, 5' end.DH916804|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,583,804 - 67,584,995)(41,616,674 - 41,617,191)
sequence
gaattcactctgtagaccaggctggtcttgaactcagagattctacagcc
tctgcctcccaagtgctgggattaaagacgtgtgccactaccgccaaggt
cttttaaaatgtatatctaagctaagaatggtggagacaggaggattgga
ttcaatgggctataaaaataaaagcctgtgtcaaaaagatgtgtattgaa
ctattatttcatttccagactacgtttctgcagtgactggaagattgaaa
aatactggtcatccttatgaatgtcagaatgttcctttaatgaaaaactt
ctatcccactgtctaagctccctaaggctggacactaggcttgctttatc
atcatctctgggctctcacttaggaaagacttcccagagatgtcaatcta
atcaatgaatccatgcagagtaaacaaatgagcatgccatgaaaatcact
tacattaaagctgtttccgaggtaggcaacttgccctgacttctctgagt
taaatcttctagctttcccccatcagtctcccactggtgtatttgtcacc
cgacaataagttttgatcatacttaacgctggagaggaaactaacagtca
aataggaagaagatacctctgtatacagcagaggaacattttttgcttag
tggcttaactaagcgatggatggagaatgcttcccaatggcttgagttgt
tctccaaggtttcctagtgggagtgatagaaaattatctccgcagccagg
acaggtcccagtgatacccagaagagcctgagcagcggtagcagccccag
tgtctgaccctgcaagttcacctccatcacaaaccagatgggggacaatc
ctgtctccccagcaactctcagaccaatgcaatgccaggaattctttttg
gatggatttgtataagctccagagtgactgtagaacagccacaattggtg
tctatagcagacgtattttagactcaacccagctctggtcacacagagct
gggctctggacactgtcctccaggatttctcaattgcagaggggggagca
ggtcatgacctcactagggtcacagagagaaaaacagcaaagttacttga
gctgctctgaagggcatctgttcagcttggtgactcatagccatcaggcg
cctccagctacctccctatcactctga
gaattctctggtccgtgatgtcggaaattatctgacctagtaaggtggat
ggggagcagcctgtcaggtctaggagcgacatgggaagtccccgaagctg
cagctcacaatccctcaactgcacaggtcttggccgtgtgtggtatttga
ccagtgtgctgagcgtagaagcacatcagctgtggttaagtagggacatg
gttgtggcttccactttgcagtaagtgtctgacatgaccactacagaagt
gcaggattgaacgagccttatttcacgagccagattaaatcaaaagctaa
agtttcatgtcccaggaaatcaaagggggttttatttttgctctcaagat
tcaaaattttaaccaattttttttttctttttttttttttttccattttt
tattaggtatttaactcatttacatttccaatgctataccaaaagtcccc
catatccacccacccccactcccctgcccacccactccccctttttggcc
ctggtattcccctgtactggggcatataaagtttgcaagtccaatgggcc
tctctttccagtgatggccgactaggccatcttttgatatatatgcagct
agagtcaagagctccggggtactggttagctcataatgttgttccaccta
tagggttgcagatccctttagctccttggctactttctctagctcctcca
ttgggagccctatgatccatccattagctgactgtgagcatccacttctg
tgtttgctgggccccggcatagtctcacaagagacagctacatctgggtc
ctttcaataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgc
tgattatggggtggatccctggctatggcagtctctacatggtccatcct
ttcatctcagctccaaactcaatctctgtaactccttccatgggtgtttt
gttcccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67583804_67584995
seq2: B6Ng01-110B05.b_49_1225

seq1  GAATTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAGATTCTACAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAGATTCTACAGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGACGTGTGCCACTACCGCCAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGACGTGTGCCACTACCGCCAAGGT  100

seq1  CTTTTAAAATGTATATCTAAGCTAAGAATGGTGGAGACAGGAGGATTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAATGTATATCTAAGCTAAGAATGGTGGAGACAGGAGGATTGGA  150

seq1  TTCAATGGGCTATAAAAATAAAAGCCTGTGTCAAAAAGATGTGTATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGGCTATAAAAATAAAAGCCTGTGTCAAAAAGATGTGTATTGAA  200

seq1  CTATTATTTCATTTCCAGACTACGTTTCTGCAGTGACTGGAAGATTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTCATTTCCAGACTACGTTTCTGCAGTGACTGGAAGATTGAAA  250

seq1  AATACTGGTCATCCTTATGAATGTCAGAATGTTCCTTTAATGAAAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGTCATCCTTATGAATGTCAGAATGTTCCTTTAATGAAAAACTT  300

seq1  CTATCCCACTGTCTAAGCTCCCTAAGGCTGGACACTAGGCTTGCTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCACTGTCTAAGCTCCCTAAGGCTGGACACTAGGCTTGCTTTATC  350

seq1  ATCATCTCTGGGCTCTCACTTAGGAAAGACTTCCCAGAGATGTCAATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTGGGCTCTCACTTAGGAAAGACTTCCCAGAGATGTCAATCTA  400

seq1  ATCAATGAATCCATGCAGAGTAAACAAATGAGCATGCCATGAAAATCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAATCCATGCAGAGTAAACAAATGAGCATGCCATGAAAATCACT  450

seq1  TACATTAAAGCTGTTTCCGAGGTAGGCAACTTGCCCTGACTTCTCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAAGCTGTTTCCGAGGTAGGCAACTTGCCCTGACTTCTCTGAGT  500

seq1  TAAATCTTCTAGCTTTCCCCCATCAGTCTCCCACTGGTGTATTTGTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTCTAGCTTTCCCCCATCAGTCTCCCACTGGTGTATTTGTCACC  550

seq1  CGACAATAAGTTTTGATCATACTTAACGCTGGAGAGGAAACTAACAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAATAAGTTTTGATCATACTTAACGCTGGAGAGGAAACTAACAGTCA  600

seq1  AATAGGAAGAAGATACCTCTGTATACAGCAGAGGAACATTTTTTGCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAGAAGATACCTCTGTATACAGCAGAGGAACATTTTTTGCTTAG  650

seq1  TGGCTTAACTAAGCGATGGATGGAGAATGCTTCCCAATGGCTTGAGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAACTAAGCGATGGATGGAGAATGCTTCCCAATGGCTTGAGTTGT  700

seq1  TCTCCAAGGTTTCCTAGTGGGAGTGATAGAAAATTATCTCCGCAGCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGTTTCCTAGTGGGAGTGATAGAAAATTATCTCCGCAGCCAGG  750

seq1  ACAGGTCCCAGTGATACCCAGAAGAGCCTGAGCAGCGGTAGCAGCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCCCAGTGATACCCAGAAGAGCCTGAGCAGCGGTAGCAGCCCCAG  800

seq1  TGTCTGACCCTGCAAGTTCACCTCCATCACAAACCAGATGGGGGACAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACCCTGCAAGTTCACCTCCATCACAAACCAGATGGGGGACAATC  850

seq1  CTGTCTCCCCAGCAACTCTCAGACCAATGCAATGCCAGGAATTTCTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGTCTCCCCAGCAACTCTCAGACCAATGCAATGCCAGGAA-TTCTTTTT  899

seq1  GGATGGATTTGTAATAAGCTCCAGAGTGACTGTAGAAACAGCCACAATTG  950
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GGATGGATTTGT-ATAAGCTCCAGAGTGACTGTAG-AACAGCCACAATTG  947

seq1  GTGTTCTATAGCAAGACGTATTTTTAGACTCAACCCAGCTCTGGTCACAC  1000
      ||| |||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GTG-TCTATAGC-AGACGTA-TTTTAGACTCAACCCAGCTCTGGTCACAC  994

seq1  AGAGCTGGGCTCTGGACACTGTCCTCCAGGATTTCTCAAATTGCAGAGGG  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGCTGGGCTCTGGACACTGTCCTCCAGGATTTCTC-AATTGCAGAGGG  1043

seq1  GGGAGCAGGTCATGACCTCACTAGGGTCACAGAGAGGAAAACAGCAAAGT  1100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGAGCAGGTCATGACCTCACTAGGGTCACAGAGAGAAAAACAGCAAAGT  1093

seq1  TACTTGAAGCTGCTCTGAAGGGCAATTCTGTTCAGC-TGGTGACTTCATA  1149
      |||||| |||||||||||||||||  |||||||||| ||||||| |||||
seq2  TACTTG-AGCTGCTCTGAAGGGCA--TCTGTTCAGCTTGGTGAC-TCATA  1139

seq1  GCCATCAAGGCGGCCTCCCCAGCTACCTCCTCATCCACTCTGA  1192
      |||||| |||| ||||  ||||||||||||  || ||||||||
seq2  GCCATC-AGGC-GCCT--CCAGCTACCTCCCTAT-CACTCTGA  1177

seq1: chr16_41616674_41617191
seq2: B6Ng01-110B05.g_418_944

seq1  --------AA--AATTTTTTTTTTCTTTTCTTTTTTTTTTTCCAATTTTT  40
              ||  ||||||||||||||||| |||||||||||||| |||||
seq2  AAAATTTTAACCAATTTTTTTTTTCTTTT-TTTTTTTTTTTCCATTTTTT  49

seq1  ATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCC  90
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCC  99

seq1  ATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCC  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCC  149

seq1  TGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCT  199

seq1  CTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTA  249

seq1  GAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTAT  299

seq1  AGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCAT  349

seq1  TGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGT  399

seq1  GTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCGTCC  440
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCC  449

seq1  TTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCT  499

seq1  GATTATGGGGTGGATCCCTGGCTATGGC  518
      ||||||||||||||||||||||||||||
seq2  GATTATGGGGTGGATCCCTGGCTATGGC  527