BAC Information

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BAC

Clone NameB6Ng01-110C24
Chromosome16 (Build37)
Map Location 6,856,548 - 7,017,044
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneLOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110C24.bB6Ng01-110C24.g
ACCDH916883DH916884
length1,113673
definitionDH916883|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C24, 5' end.DH916884|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,856,548 - 6,857,674)(7,016,372 - 7,017,044)
sequence
gaattctcacctgagtttgatccccagaacacacatggaagagaatcagc
tccaaaagttttattctgatctccacatgtgtgcatgaacacacaaacac
acacacacatccaagcacatgtatgcacaaaacataaatatggagacaca
tactgaataaatgtttaaaaagaaaacacacatctatactattatagcta
caagattccattacactgttgtctgtgataggctttactaagttcaaact
tgaaaaggaacccggaaacaccaagcttacctttagccctgcagctcctc
cctccatccttcctcgttgggtcaccactagcctctatgcaaatagagga
atgaatggaaatcttctgaggtcatagattgtctttggggaagagttgaa
gctgtcttccagagccatttcttgttgatatcttcacaggatttaaagag
agtgaggcacgccaggatatttatgaatcatgagacttaatagagaccaa
agtggatcctattattgatgtgcttactgcttcattaagttccccttaag
gtttgcagcatggataaggatcatttgcaataataattatgctgtgatcg
attgattgggtctgacattgcacttgtcaccttgaaatgcagaatccatc
tatttttgacagtgcgaacattttttgctaatctcacaccccagcagatg
atagtttatttttatggagagagtatagtttataaagtttggagacttaa
ccttttgggggaaaaaaaaggaggaggcatcccttgtcattcacagagaa
gtaaaaatcatcccacccagcaatatttttaagattagggaaacatagtc
taatttcaaaaaggatttttccaacaaacaaaaattgcaggcatttttat
tgactgctacaagtggtattgaaagcatgcaagttgacaagtcttctcat
ggaccattgacgtgtagggctaagggactctagagatatgaaagaatgct
gctcttgcagaagtctcaagtcatttctaacaccatggtggatgtctcag
tgacctgtccaaccacttcagacactgtaggcagcaattgcatgtgcata
acacatgaggaac

gaattcaagtgcaaacccccaaagagaccacctggtgaaaggcagaaaat
atcattaactgaaaacaagacatttctgagaaatccgcatttcagcttta
ccaaagagacaccgtagcactttgcccaagtgacatgttatatacagaga
aaatgcagcatttatttctattacaccagcttcctctgtgtaagtcagag
aggttagacgctcagcacggggtccctcttggccaaagatccacattaaa
aaaagtaagaaagaaaggaagatatatatatatatatagtctcctgaaac
atatggaaattttataatcatttaaaataagagttgttttttgttttttt
ttaatcagtctttcttcactacttacattagaagacctagatcccaggaa
gatcagagtgttttgttttttaaagaaacaaaaagcaaaaagaaaggaaa
tattaaatttcttcactttctatctaaccctcatcaaatggtccctattc
aatgaggtcaatttactttgagaacaagacaacatcagctaagcaccaga
aatcactggtagtcttaacacttggcataaatattagtgttcattttagg
ttttattgcatttttttaaaaaatgaattggatcttgtccatgtttttcc
tgcggggggtggggagtgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6856548_6857674
seq2: B6Ng01-110C24.b_40_1152

seq1  GAATTCTCACCTGAGTTTGATCCCCAGAACACACATGGAAGAGAATCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGTTTGATCCCCAGAACACACATGGAAGAGAATCAGC  50

seq1  TCCAAAAGTTTTATTCTGATCTCCACATGTGTGCATGAACACACAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGTTTTATTCTGATCTCCACATGTGTGCATGAACACACAAACAC  100

seq1  ACACACACATCCAAGCACATGTATGCACAAAACATAAATATGGAGACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATCCAAGCACATGTATGCACAAAACATAAATATGGAGACACA  150

seq1  TACTGAATAAATGTTTAAAAAGAAAACACACATCTATACTATTATAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATAAATGTTTAAAAAGAAAACACACATCTATACTATTATAGCTA  200

seq1  CAAGATTCCATTACACTGTTGTCTGTGATAGGCTTTACTAAGTTCAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTCCATTACACTGTTGTCTGTGATAGGCTTTACTAAGTTCAAACT  250

seq1  TGAAAAGGAACCCGGAAACACCAAGCTTACCTTTAGCCCTGCAGCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGAACCCGGAAACACCAAGCTTACCTTTAGCCCTGCAGCTCCTC  300

seq1  CCTCCATCCTTCCTCGTTGGGTCACCACTAGCCTCTATGCAAATAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCCTTCCTCGTTGGGTCACCACTAGCCTCTATGCAAATAGAGGA  350

seq1  ATGAATGGAAATCTTCTGAGGTCATAGATTGTCTTTGGGGAAGAGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGAAATCTTCTGAGGTCATAGATTGTCTTTGGGGAAGAGTTGAA  400

seq1  GCTGTCTTCCAGAGCCATTTCTTGTTGATATCTTCACAGGATTTAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCCAGAGCCATTTCTTGTTGATATCTTCACAGGATTTAAAGAG  450

seq1  AGTGAGGCACGCCAGGATATTTATGAATCATGAGACTTAATAGAGACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCACGCCAGGATATTTATGAATCATGAGACTTAATAGAGACCAA  500

seq1  AGTGGATCCTATTATTGATGTGCTTACTGCTTCATTAAGTTCCCCTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCCTATTATTGATGTGCTTACTGCTTCATTAAGTTCCCCTTAAG  550

seq1  GTTTGCAGCATGGATAAGGATCATTTGCAATAATAATTATGCTGTGATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGCATGGATAAGGATCATTTGCAATAATAATTATGCTGTGATCG  600

seq1  ATTGATTGGGTCTGACATTGCACTTGTCACCTTGAAATGCAGAATCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGGGTCTGACATTGCACTTGTCACCTTGAAATGCAGAATCCATC  650

seq1  TATTTTTGACAGTGCGAACATTTTTTGCTAATCTCACACCCCAGCAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGACAGTGCGAACATTTTTTGCTAATCTCACACCCCAGCAGATG  700

seq1  ATAGTTTATTTTTATGGAGAGAGTATAGTTTATAAAGTTTGGAGACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATTTTTATGGAGAGAGTATAGTTTATAAAGTTTGGAGACTTAA  750

seq1  CCTTTTGGGG--AAAAAAAAGAAGAAGCATCCCTTGTCATTCACAGAGAA  798
      ||||||||||  ||||||| || || ||||||||||||||||||||||||
seq2  CCTTTTGGGGGAAAAAAAAGGAGGAGGCATCCCTTGTCATTCACAGAGAA  800

seq1  GTAAAAATCAT-CCAACCAGCAATATTTTTAAGATTA-GGAAACATAGTC  846
      ||||||||||| ||| ||||||||||||||||||||| ||||||||||||
seq2  GTAAAAATCATCCCACCCAGCAATATTTTTAAGATTAGGGAAACATAGTC  850

seq1  TAATTTCAAAAAGGATTTTTCCAACAAACAAAAAATTGCAGGCATTTTTA  896
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATTTCAAAAAGGATTTTTCCAACAAAC-AAAAATTGCAGGCATTTTTA  899

seq1  TTGACTGCTACAAGT-GTATTGAAAGCATGCAAGTTGACAAAGTCTTCTC  945
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TTGACTGCTACAAGTGGTATTGAAAGCATGCAAGTTGAC-AAGTCTTCTC  948

seq1  ATGGACCATTGACGTGTAGGGCTAAGGGACTCTAGAGATATGAAAGAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ATGGACCATTGACGTGTAGGGCTAAGGGACTCTAGAGATATGAAAGAA--  996

seq1  TGCTGCTCTTGCAGAAGTCTCACAGTCAATTCCTAACACCCATGTTGGAT  1045
      |||||||||||||||||||||| |||| ||| |||||| ||||| |||||
seq2  TGCTGCTCTTGCAGAAGTCTCA-AGTC-ATTTCTAACA-CCATGGTGGAT  1043

seq1  GTCTCACAGTGACCTGTCACACCACTCCAGGACAACCTTGGTAGGCAGCC  1095
      ||||  ||||||||||||  |||||| || ||||  ||  ||||||||| 
seq2  GTCT--CAGTGACCTGTCCAACCACTTCA-GACA--CT--GTAGGCAGCA  1086

seq1  ATATGCATGTGCACATACACACATGGAGGAAC  1127
      || |||||||||| |   |||||| |||||||
seq2  AT-TGCATGTGCATA---ACACAT-GAGGAAC  1113


seq1: chr16_7016372_7017044
seq2: B6Ng01-110C24.g_65_737 (reverse)

seq1  CCTCCCACTCCCCACCCCCCGCAGGAAAAACATGGACAAGATCCAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTCCCCACCCCCCGCAGGAAAAACATGGACAAGATCCAATTCA  50

seq1  TTTTTTAAAAAAATGCAATAAAACCTAAAATGAACACTAATATTTATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAAATGCAATAAAACCTAAAATGAACACTAATATTTATGCC  100

seq1  AAGTGTTAAGACTACCAGTGATTTCTGGTGCTTAGCTGATGTTGTCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTAAGACTACCAGTGATTTCTGGTGCTTAGCTGATGTTGTCTTGT  150

seq1  TCTCAAAGTAAATTGACCTCATTGAATAGGGACCATTTGATGAGGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTAAATTGACCTCATTGAATAGGGACCATTTGATGAGGGTTAG  200

seq1  ATAGAAAGTGAAGAAATTTAATATTTCCTTTCTTTTTGCTTTTTGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGTGAAGAAATTTAATATTTCCTTTCTTTTTGCTTTTTGTTTCT  250

seq1  TTAAAAAACAAAACACTCTGATCTTCCTGGGATCTAGGTCTTCTAATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACAAAACACTCTGATCTTCCTGGGATCTAGGTCTTCTAATGTA  300

seq1  AGTAGTGAAGAAAGACTGATTAAAAAAAAACAAAAAACAACTCTTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGAAGAAAGACTGATTAAAAAAAAACAAAAAACAACTCTTATTTT  350

seq1  AAATGATTATAAAATTTCCATATGTTTCAGGAGACTATATATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTATAAAATTTCCATATGTTTCAGGAGACTATATATATATATAT  400

seq1  ATCTTCCTTTCTTTCTTACTTTTTTTAATGTGGATCTTTGGCCAAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTTTCTTTCTTACTTTTTTTAATGTGGATCTTTGGCCAAGAGGG  450

seq1  ACCCCGTGCTGAGCGTCTAACCTCTCTGACTTACACAGAGGAAGCTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTGCTGAGCGTCTAACCTCTCTGACTTACACAGAGGAAGCTGGTG  500

seq1  TAATAGAAATAAATGCTGCATTTTCTCTGTATATAACATGTCACTTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAATAAATGCTGCATTTTCTCTGTATATAACATGTCACTTGGGC  550

seq1  AAAGTGCTACGGTGTCTCTTTGGTAAAGCTGAAATGCGGATTTCTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTACGGTGTCTCTTTGGTAAAGCTGAAATGCGGATTTCTCAGAA  600

seq1  ATGTCTTGTTTTCAGTTAATGATATTTTCTGCCTTTCACCAGGTGGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTGTTTTCAGTTAATGATATTTTCTGCCTTTCACCAGGTGGTCTC  650

seq1  TTTGGGGGTTTGCACTTGAATTC  673
      |||||||||||||||||||||||
seq2  TTTGGGGGTTTGCACTTGAATTC  673


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