BAC Information

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BAC

Clone NameB6Ng01-111J01
Chromosome16 (Build37)
Map Location 63,124,996 - 63,296,498
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111J01.bB6Ng01-111J01.g
ACCDH917876DH917877
length1,1551,104
definitionDH917876|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J01, 5' end.DH917877|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,124,996 - 63,126,164)(63,295,381 - 63,296,498)
sequence
gaattctcttcagtgtgcttttttcttcaaagtccttctaatatacaaac
atttccagtccccttggtggtggagtgtaagctcactgtcagtatattga
tcgcaaggttaaaatgcttctatttttataaattttgtgtattttttcct
ccaattttttattaggcatttacttcatttacatttcaaatgctatcccg
aaagtcctctatctcccccccccccccgcctacctccctacccacccact
cccacttcttggccctggtatttcccctgtactggggcatatacagtttg
caagaccaaggggcctctcttcccaatgatggccgactaggccatcttct
gctacatatgcagctagagacacgagctctggggggtactggttagttca
tattgttgttccacctatagggttgcagacccctttagctccttgggtac
tctctctagctcctccactgggggccatgtgttccatccaatagctgact
gtgagcatccacttctgtgtttgctaggcactagcttagcctcacaagag
acagctatatcagggttccttcagcaaaatcttgctggcatatgcaatag
tgtctgcatttggtggctgattatgagatggacctccaggtgcggcaagt
gtctggatagtccatcctttcgtctcagctccaaactttgtctctgtaac
tccttccatgggtgtttagttcccaattctaagaagtggcgaattgtcca
cactttgctcttcctccttcttgagtttcatgtgttttgcaagttgtatc
ttgggtattctacgtttctgggctgaaactctgttgggatatttttgtat
tcctaagtgcttaattaaatgcttgggtatctgcattttgtacatatgca
cacactgcccccacacacacccatgcacatacacacagacctcccactgt
ctaatagcagctaagatatgttaaaaatattgcactttgaaactcagggt
tctgtttcctcttcattattggaagatctggtattagcagaattgtagac
aatgaccagtcacattgaatactctaggaagggagacagctgcaacgtat
caatgcaatcctctaagtctatggctcatctgtcttctgaatttagattt
tcttt
gaattctggtctccatgttgtcccgtgacctccagacacatacgacggca
cacacttcccaatcaaccctcacatagtaaatgtaaaaacaaatttgaaa
taaatctctccatgctattttaaacatgataaatttttactatcattttt
cttaattcctcgattatttatgtatcctgtgatgtatttgattatacaaa
aacccatcttaagcttcagcattgtttcaatgccaccagatatagcagaa
tattttctcccaaagaaaacttttaatttagttgggagacaaaattaatt
ttttctaatgatgaaatgaataatttggagaaagaagtgccaaatatata
ttgacatatcataaatgtatctgaatgaaatgcacagtactcacaactta
ggtggacactgtataaattagggaaataaaatcttagattggatgtcttt
aattatttttttacataacagatagatattttaaagggcagagattatgt
tttattcataaatgactcatgttttaaccagtagggatgctgtattagtt
aggattttattgctgtgatcagacaccatgacgtaggcaagtcttcatga
agaacaacatttaattaagactagcttacaggttcagaggctcagtctac
tatcatcaaggtgagagcatggcagtatctaggcaggcatggtgcaggca
gagctgaaagttctacatcttcatctgaaggctgttagtggaagactgac
ttccaggcagctaggatgagggttttaaagcccatgcccacagtgacaaa
cctactccaacagaacaacacccactagtacggccatttccctatgccaa
ccctatagataccactacagatgctcagggaaaatatggcttatgataca
ttccaaatgttttaaaacataactaggacataaatagaaataaagcatat
aaatagattaataaaaattcatgtatgaaatatgcagtgattattatctc
aggctacaagtagaatattttattagtcatcaaattataaggactcatta
tcctccaataatggtgttattcaaaataaggaagtctcaaatattgcttt
cata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63124996_63126164
seq2: B6Ng01-111J01.b_44_1198

seq1  GAATTCTCTTCAGTGTGCTTTTTTCTTCAAAGTCCTTCTAATATACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAGTGTGCTTTTTTCTTCAAAGTCCTTCTAATATACAAAC  50

seq1  ATTTCCAGTCCCCTTGGTGGTGGAGTGTAAGCTCACTGTCAGTATATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGTCCCCTTGGTGGTGGAGTGTAAGCTCACTGTCAGTATATTGA  100

seq1  TCGCAAGGTTAAAATGCTTCTATTTTTATAAATTTTGTGTATTTTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAGGTTAAAATGCTTCTATTTTTATAAATTTTGTGTATTTTTTCCT  150

seq1  CCAATTTTTTATTAGGCATTTACTTCATTTACATTTCAAATGCTATCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTTATTAGGCATTTACTTCATTTACATTTCAAATGCTATCCCG  200

seq1  AAAGTCCTCTATCTCCCCCCCCCCCCCGCCTACCTCCCTACCCACCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTCTATCTCCCCCCCCCCCCCGCCTACCTCCCTACCCACCCACT  250

seq1  CCCACTTCTTGGCCCTGGTATTTCCCCTGTACTGGGGCATATACAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCTTGGCCCTGGTATTTCCCCTGTACTGGGGCATATACAGTTTG  300

seq1  CAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCT  350

seq1  GCTACATATGCAGCTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATATGCAGCTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCA  400

seq1  TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  450

seq1  TCTCTCTAGCTCCTCCACTGGGGGCCATGTGTTCCATCCAATAGCTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGCTCCTCCACTGGGGGCCATGTGTTCCATCCAATAGCTGACT  500

seq1  GTGAGCATCCACTTCTGTGTTTGCTAGGCACTAGCTTAGCCTCACAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATCCACTTCTGTGTTTGCTAGGCACTAGCTTAGCCTCACAAGAG  550

seq1  ACAGCTATATCAGGGTTCCTTCAGCAAAATCTTGCTGGCATATGCAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATATCAGGGTTCCTTCAGCAAAATCTTGCTGGCATATGCAATAG  600

seq1  TGTCTGCATTTGGTGGCTGATTATGAGATGGACCTCCAGGTGCGGCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCATTTGGTGGCTGATTATGAGATGGACCTCCAGGTGCGGCAAGT  650

seq1  GTCTGGATAGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATAGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAAC  700

seq1  TCCTTCCATGGGTGTTTAGTTCCCAATTCTAAGAAGTGGCGAATTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATGGGTGTTTAGTTCCCAATTCTAAGAAGTGGCGAATTGTCCA  750

seq1  CACTTTGCTCTTCCTCCTTCTTGAGTTTCATGTGTTTTGCAAGTTGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCTCTTCCTCCTTCTTGAGTTTCATGTGTTTTGCAAGTTGTATC  800

seq1  TTGGGTATTCTACGTTTCTGGGCTGAAACTCTGTTGGGATATTTTTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATTCTACGTTTCTGGGCTGAAACTCTGTTGGGATATTTTTGTAT  850

seq1  TCCTAAGTGCTTAATTAAATGCTTGGGTATCTGCATTTTGTACATATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTGCTTAATTAAATGCTTGGGTATCTGCATTTTGTACATATGCA  900

seq1  CACACCTGCCCCCACACACACCCATGCACATACACACAGACCTCCCACTG  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACA-CTGCCCCCACACACACCCATGCACATACACACAGACCTCCCACTG  949

seq1  TCTAATAGCAGCTAAGATATGTTTAAAAATAATTGCACTTTGAAACTCAA  1000
      ||||||||||||||||||||| |||||||| |||||||||||||||||| 
seq2  TCTAATAGCAGCTAAGATATG-TTAAAAAT-ATTGCACTTTGAAACTCAG  997

seq1  GGGTCTGTTTCACTCTTCATTATTGGAAGAACCTGGTATTAGCAGAA-TG  1049
      || |||||||| ||||||||||||||||| | ||||||||||||||| ||
seq2  GGTTCTGTTTC-CTCTTCATTATTGGAAG-ATCTGGTATTAGCAGAATTG  1045

seq1  TAGGACAATGAACCAGTCCACATGGACATACTCTAGGGAAGGAGACAGGC  1099
      || ||||||| |||||| ||||| || |||||||||| | ||||||||  
seq2  TA-GACAATG-ACCAGT-CACATTGA-ATACTCTAGGAAGGGAGACAG--  1089

seq1  TTGCAGAACGTATCAGTGCAAATCCTCTCAATGTCTAT-GCTCATCTTTC  1148
       |||  ||||||||| ||| ||||||||  | |||||| |||||||| ||
seq2  CTGC--AACGTATCAATGC-AATCCTCT--AAGTCTATGGCTCATCTGTC  1134

seq1  TTCTGATTTTAGATTTTCTTT  1169
      |||||| ||||||||||||||
seq2  TTCTGAATTTAGATTTTCTTT  1155

seq1: chr16_63295381_63296498
seq2: B6Ng01-111J01.g_68_1171 (reverse)

seq1  TATGAAAGCAATATTTGAGAACTACTTTTATTTTGAAATAACACATTTAT  50
      ||||||||||||||||||||  | |  |||||||| ||||||||  ||||
seq2  TATGAAAGCAATATTTGAGACTTCC--TTATTTTG-AATAACACCATTAT  47

seq1  TGGAGAATTATTGAGT-CTTATATATGAATGACTAAATAAAATTATTCTA  99
      ||||| | || ||||| ||||||  |  |||||| ||||||| |||||| 
seq2  TGGAGGA-TAATGAGTCCTTATAATTTGATGACT-AATAAAA-TATTCT-  93

seq1  ACTTGGTAAGCCTGAGATAATAATCACTGCATATTTTCATACATGAATTT  149
      |||||   ||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTG--TAGCCTGAGATAATAATCACTGCATA-TTTCATACATGAATTT  140

seq1  TTTATTTTATTCTTATTTATATTGCTTTATTTCTATTTATGTCTTAGTTA  199
      |   | ||| || |||||||| ||||||||||||||||||||| ||||||
seq2  T---TATTAATC-TATTTATA-TGCTTTATTTCTATTTATGTCCTAGTTA  185

seq1  TGTTTTAAAAACATTTGGAATGTATCATAAGCCATATTTTCCCTGAGCAT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTT-AAAACATTTGGAATGTATCATAAGCCATATTTTCCCTGAGCAT  234

seq1  CTGTAGTGGTATCTATAGGGTTGGCATAGGG-AATGGCCGTACTAGTGGG  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTAGTGGTATCTATAGGGTTGGCATAGGGAAATGGCCGTACTAGTGGG  284

seq1  TGTTGTTCTGTTGGAGTAGGTTTGTCACTGTGGGCATGGGCTTTAAAACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTGTTGGAGTAGGTTTGTCACTGTGGGCATGGGCTTTAAAACC  334

seq1  CTCATCCTAGCTGCCTGGAAGTCAGTCTTCCACTAACAGCCTTCAGATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTAGCTGCCTGGAAGTCAGTCTTCCACTAACAGCCTTCAGATGA  384

seq1  AGATGTAGAACTTTCAGCTCTGCCTGCACCATGCCTGCCTAGATACTGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGAACTTTCAGCTCTGCCTGCACCATGCCTGCCTAGATACTGCC  434

seq1  ATGCTCTCACCTTGATGATAGTAGACTGAGCCTCTGAACCTGTAAGCTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCACCTTGATGATAGTAGACTGAGCCTCTGAACCTGTAAGCTAG  484

seq1  TCTTAATTAAATGTTGTTCTTCATGAAGACTTGCCTACGTCATGGTGTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTAAATGTTGTTCTTCATGAAGACTTGCCTACGTCATGGTGTCT  534

seq1  GATCACAGCAATAAAATCCTAACTAATACAGCATCCCTACTGGTTAAAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGCAATAAAATCCTAACTAATACAGCATCCCTACTGGTTAAAAC  584

seq1  ATGAGTCATTTATGAATAAAACATAATCTCTGCCCTTTAAAATATCTATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCATTTATGAATAAAACATAATCTCTGCCCTTTAAAATATCTATC  634

seq1  TGTTATGTAAAAAAATAATTAAAGACATCCAATCTAAGATTTTATTTCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTAAAAAAATAATTAAAGACATCCAATCTAAGATTTTATTTCCC  684

seq1  TAATTTATACAGTGTCCACCTAAGTTGTGAGTACTGTGCATTTCATTCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATACAGTGTCCACCTAAGTTGTGAGTACTGTGCATTTCATTCAG  734

seq1  ATACATTTATGATATGTCAATATATATTTGGCACTTCTTTCTCCAAATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTATGATATGTCAATATATATTTGGCACTTCTTTCTCCAAATTA  784

seq1  TTCATTTCATCATTAGAAAAAATTAATTTTGTCTCCCAACTAAATTAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCATCATTAGAAAAAATTAATTTTGTCTCCCAACTAAATTAAAA  834

seq1  GTTTTCTTTGGGAGAAAATATTCTGCTATATCTGGTGGCATTGAAACAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTGGGAGAAAATATTCTGCTATATCTGGTGGCATTGAAACAAT  884

seq1  GCTGAAGCTTAAGATGGGTTTTTGTATAATCAAATACATCACAGGATACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTTAAGATGGGTTTTTGTATAATCAAATACATCACAGGATACA  934

seq1  TAAATAATCGAGGAATTAAGAAAAATGATAGTAAAAATTTATCATGTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCGAGGAATTAAGAAAAATGATAGTAAAAATTTATCATGTTTA  984

seq1  AAATAGCATGGAGAGATTTATTTCAAATTTGTTTTTACATTTACTATGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCATGGAGAGATTTATTTCAAATTTGTTTTTACATTTACTATGTG  1034

seq1  AGGGTTGATTGGGAAGTGTGTGCCGTCGTATGTGTCTGGAGGTCACGGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGATTGGGAAGTGTGTGCCGTCGTATGTGTCTGGAGGTCACGGGA  1084

seq1  CAACATGGAGACCAGAATTC  1118
      ||||||||||||||||||||
seq2  CAACATGGAGACCAGAATTC  1104