BAC Information

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BAC

Clone NameB6Ng01-111J15
Chromosome16 (Build37)
Map Location 29,848,255 - 29,896,836
singlet/doubletdoublet
Overlap genenone
Upstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111J15.bB6Ng01-111J15.g
ACCDH917902DH917903
length957940
definitionDH917902|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J15, 5' end.DH917903|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,848,255 - 29,849,217)(29,895,899 - 29,896,836)
sequence
gaattcttcatttaaaagatttttaaattttttttttttacatttattta
gtgtgtttgaatatcacacatgcaaaggttaaaagacgactcagggcaac
cagatctctctttctactatgtgggttcctgttgtcaggcttggtggaaa
gtgcccttacctgctgagccatcttgtgagtccctgcttttgattttttt
gacagtgtctctttatacagcccaggctagcttaaaacccactatatagc
caggctagcctgctcctgcctcgggttctgaagtactgagattataggct
ttctttactgcaccaatatttgtgtcatttatttgtttgttttaaaaatt
gcattcgagtggcaagagctagcattcactatgtgcctctgaagtcctac
aagtgcgctatcaatctctctgcgcgctgggtaaggggaccatcccttcc
ttacctcagggatggcaagagagtgagtggctcattttagtgttcctaca
gtcttagctagcgatccccacaagcgcgaatcattccctaacttcctctg
gatggcgctgttccctccgcctacttttttttttttttcagcttatggtc
tccagctcacctttcccagtcggcacaccatcttgtaagttcttgtttaa
ggtcctgcactttactgtcttagtgtgctagggattgtgggtacctgttc
ctctgacctctgctccgggacactccaggttggccgcaatcgcttcttgt
actttctctgcatgcatgccatgcaatctcacataggatagttttaaaac
gcctacctaccagtcacatgactcaaaagttcttaaagtatctccctgag
gataactccctctcgaaggtcttacctcactctctgagttgcggctttgg
ctgtcccctagatgcatatagcagaaagctttaagcttcggactttaaca
tggtgtg
gaattcaaatcaggagatcttgaaggtatttacaacccaggcaactctgg
agtggtagatttgttcgtgcactatatgaccactcagagaggtcaatgtt
agttgtgtcattatttacagaagaataaagttcaacagacagaccaatca
gagaacacccacaaggaacagggactgggctgaggccttggagttgcaca
gtgctgtgtacaggctggggaggaggcaggtgtggctcgtactgggatgc
acctatgggagggtgagggaccctgaggggtagagtaaagggagagacgg
aaggcccacctgggcaaagctgcagagagcgttctgaaggcccagtggag
gatttgtcagtttgctcctgagccatggtgttatgtagaactgactatag
caagattgctcctttgtagatgtaatggttgatactactgactggagaga
gaccagactcagaatctaaggtgttttcattcacgagtagctttggcaag
tgacttaacctctccactactctgtttctgtgagtgtggtttgcgaggga
taggttagaaaagaggggtaaaggtaccagcaaggcccagcctttcaggg
tgttctgggtggtccataaagcttgggggcagggggaacctgaaaatctg
catggctaattccttattctgccacatggactgtccccaatggtcactgt
cttctctcattactcttggatcagagtagttatgatggaacttaaattat
tcactagttatatttttctaggtatatgaaaaaatattattgtctcagtt
aaagtaacaggtacttttattttgttcatccaacaagtttttctggaaat
attttatgcaccgtagtgtggtcagtggcagctttcctgtccatatcaat
gctcaaaacatatgaagcagaagatctcgaagctgagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29848255_29849217
seq2: B6Ng01-111J15.b_46_1002

seq1  GAATTCTTCATTTAAAAGATTTTTAAATTTTTTTTTTTTACATTTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTAAAAGATTTTTAAATTTTTTTTTTTTACATTTATTTA  50

seq1  GTGTGTTTGAATATCACACATGCAAAGGTTAAAAGACGACTCAGGGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGAATATCACACATGCAAAGGTTAAAAGACGACTCAGGGCAAC  100

seq1  CAGATCTCTCTTTCTACTATGTGGGTTCCTGTTGTCAGGCTTGGTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTCTTTCTACTATGTGGGTTCCTGTTGTCAGGCTTGGTGGAAA  150

seq1  GTGCCCTTACCTGCTGAGCCATCTTGTGAGTCCCTGCTTTTGATTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTTACCTGCTGAGCCATCTTGTGAGTCCCTGCTTTTGATTTTTTT  200

seq1  GACAGTGTCTCTTTATACAGCCCAGGCTAGCTTAAAACCCACTATATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTCTCTTTATACAGCCCAGGCTAGCTTAAAACCCACTATATAGC  250

seq1  CAGGCTAGCCTGCTCCTGCCTCGGGTTCTGAAGTACTGAGATTATAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGCCTGCTCCTGCCTCGGGTTCTGAAGTACTGAGATTATAGGCT  300

seq1  TTCTTTACTGCACCAATATTTGTGTCATTTATTTGTTTGTTTTAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTGCACCAATATTTGTGTCATTTATTTGTTTGTTTTAAAAATT  350

seq1  GCATTCGAGTGGCAAGAGCTAGCATTCACTATGTGCCTCTGAAGTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGAGTGGCAAGAGCTAGCATTCACTATGTGCCTCTGAAGTCCTAC  400

seq1  AAGTGCGCTATCAATCTCTCTGCGCGCTGGGTAAGGGGACCATCCCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCGCTATCAATCTCTCTGCGCGCTGGGTAAGGGGACCATCCCTTCC  450

seq1  TTACCTCAGGGATGGCAAGAGAGTGAGTGGCTCATTTTAGTGTTCCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCAGGGATGGCAAGAGAGTGAGTGGCTCATTTTAGTGTTCCTACA  500

seq1  GTCTTAGCTAGCGATCCCCACAAGCGCGAATCATTCCCTAACTTCCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGCTAGCGATCCCCACAAGCGCGAATCATTCCCTAACTTCCTCTG  550

seq1  GATGGCGCTGTTCCCTCCGCCTACTTTTTTTTTTTTTTCAGCTTATGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCTGTTCCCTCCGCCTACTTTTTTTTTTTTTTCAGCTTATGGTC  600

seq1  TCCAGCTCACCTTTCCCAGTCGGCACACCATCTTGTAAGTTCTTGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCACCTTTCCCAGTCGGCACACCATCTTGTAAGTTCTTGTTTAA  650

seq1  GGTCCTGCACTTTACTGTCTTAGTGTGCTAGGGATTGTGGGTACCTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGCACTTTACTGTCTTAGTGTGCTAGGGATTGTGGGTACCTGTTC  700

seq1  CTCTGACCTCTGCTCCGGGACACTCCAGGTTGGCCGCAATCGCTTCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTCTGCTCCGGGACACTCCAGGTTGGCCGCAATCGCTTCTTGT  750

seq1  ACTTTCTCTGCATGCATGCCATGCAATCTCACATAGGATAGTTTTAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTGCATGCATGCCATGCAATCTCACATAGGATAGTTTTAAAAC  800

seq1  GCCTACCTACCAGTCACATGACTCAAAAGTTCTTAAAGTATCTCCCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCTACCAGTCACATGACTCAAAAGTTCTTAAAGTATCTCCCTGAG  850

seq1  GATAACTCCCTCTCGAAGGTC-TACCTCACTCTCTGAGTTGCGGCTTTGG  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATAACTCCCTCTCGAAGGTCTTACCTCACTCTCTGAGTTGCGGCTTTGG  900

seq1  CTGGTCCCCTAAGATGCCATATAGCAGAAAGCTTTAAAGCCTTCGGGACC  949
      || ||||||| ||||| ||||||||||||||||||||   ||||||   |
seq2  CT-GTCCCCT-AGATG-CATATAGCAGAAAGCTTTAA--GCTTCGG--AC  943

seq1  TTAAACATGGTGTG  963
      || |||||||||||
seq2  TTTAACATGGTGTG  957

seq1: chr16_29895899_29896836
seq2: B6Ng01-111J15.g_68_1007 (reverse)

seq1  TAACTCAGCTTCGAG-TC-TCTGCTTCATATGTTTTGAGCAATGATATGG  48
      ||||||||||||||| || |||||||||||||||||||||| ||||||||
seq2  TAACTCAGCTTCGAGATCTTCTGCTTCATATGTTTTGAGCATTGATATGG  50

seq1  ACAGGAAGGCTGGCACTGACCACACTACGGTGCATAAAATA-TTCCAGAA  97
      ||||||| |||| |||||||||||||||||||||||||||| ||||||||
seq2  ACAGGAAAGCTGCCACTGACCACACTACGGTGCATAAAATATTTCCAGAA  100

seq1  AAACTTGTTGGATGAACAAAAT-AAAGTACCTGGTACTTTAACTGAGACA  146
      |||||||||||||||||||||| |||||||||| ||||||||||||||| 
seq2  AAACTTGTTGGATGAACAAAATAAAAGTACCTGTTACTTTAACTGAGAC-  149

seq1  AATAATATTTTTTCATATACCTAGAAAAATATAACTAGTGAATAATTTAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTTTTTCATATACCTAGAAAAATATAACTAGTGAATAATTTAA  199

seq1  GTTCCATCATAACTACTCTGATCCAAGAGTTAATGAGAGAAGACAGTGAC  246
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTCCATCATAACTACTCTGATCCAAGAG-TAATGAGAGAAGACAGTGAC  248

seq1  CATTGGGGACAGTCCATGTGGCAGAATAAGGAATTAGCCATGCAGATTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGACAGTCCATGTGGCAGAATAAGGAATTAGCCATGCAGATTTT  298

seq1  CAGGTTCCCCCTGCCCCCAAGCTTTATGGACCACCCAGAACACCCTGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCCCCTGCCCCCAAGCTTTATGGACCACCCAGAACACCCTGAAA  348

seq1  GGCTGGGCCTTGCTGGTACCTTTACCCCTCTTTTCTAACCTATCCCTCGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCCTTGCTGGTACCTTTACCCCTCTTTTCTAACCTATCCCTCGC  398

seq1  AAACCACACTCACAGAAACAGAGTAGTGGAGAGGTTAAGTCACTTGCCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACTCACAGAAACAGAGTAGTGGAGAGGTTAAGTCACTTGCCAA  448

seq1  AGCTACTCGTGAATGAAAACACCTTAGATTCTGAGTCTGGTCTCTCTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCGTGAATGAAAACACCTTAGATTCTGAGTCTGGTCTCTCTCCA  498

seq1  GTCAGTAGTATCAACCATTACATCTACAAAGGAGCAATCTTGCTATAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAGTATCAACCATTACATCTACAAAGGAGCAATCTTGCTATAGTC  548

seq1  AGTTCTACATAACACCATGGCTCAGGAGCAAACTGACAAATCCTCCACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACATAACACCATGGCTCAGGAGCAAACTGACAAATCCTCCACTG  598

seq1  GGCCTTCAGAACGCTCTCTGCAGCTTTGCCCAGGTGGGCCTTCCGTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAGAACGCTCTCTGCAGCTTTGCCCAGGTGGGCCTTCCGTCTCT  648

seq1  CCCTTTACTCTACCCCTCAGGGTCCCTCACCCTCCCATAGGTGCATCCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACTCTACCCCTCAGGGTCCCTCACCCTCCCATAGGTGCATCCCA  698

seq1  GTACGAGCCACACCTGCCTCCTCCCCAGCCTGTACACAGCACTGTGCAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGAGCCACACCTGCCTCCTCCCCAGCCTGTACACAGCACTGTGCAAC  748

seq1  TCCAAGGCCTCAGCCCAGTCCCTGTTCCTTGTGGGTGTTCTCTGATTGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCCTCAGCCCAGTCCCTGTTCCTTGTGGGTGTTCTCTGATTGGT  798

seq1  CTGTCTGTTGAACTTTATTCTTCTGTAAATAATGACACAACTAACATTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTTGAACTTTATTCTTCTGTAAATAATGACACAACTAACATTGA  848

seq1  CCTCTCTGAGTGGTCATATAGTGCACGAACAAATCTACCACTCCAGAGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGAGTGGTCATATAGTGCACGAACAAATCTACCACTCCAGAGTT  898

seq1  GCCTGGGTTGTAAATACCTTCAAGATCTCCTGATTTGAATTC  938
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTTGTAAATACCTTCAAGATCTCCTGATTTGAATTC  940