BAC Information

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BAC

Clone NameB6Ng01-117K15
Chromosome16 (Build37)
Map Location 17,049,268 - 17,202,132
singlet/doubletdoublet
Overlap geneYpel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1
Downstream geneGm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K15.bB6Ng01-117K15.g
ACCDH922347DH922348
length9671,118
definitionDH922347|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K15, 5' end.DH922348|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,049,268 - 17,050,232)(17,200,990 - 17,202,132)
sequence
gaattcctccagtagacctgcaaagccagcaactggctgcctcaaggacc
attcatgtcttcaggaagtcaccagagttgtgtctctccagagaagggag
agaacatttgagcatataaaaaacaagacctggggctggtgagatggttc
agtgggtaagagcacccgactgctcttccgaaggtccgaagttcaaatcc
cagcaaccacatggtggctcacaaccatccgtaatgagatctgactccct
cttctggagtgtctgaagatagctacagtgtacttacatataataaaaat
aaataaatcttaaaagaaaaaaaaaaaaaaaaaacaagacctgtctacag
aaaagagcaccaatgagcttgcctgtagtgaatttggtagtatccctctg
gggattcatgaagtgtgctctcaaaagcagagctctgaaaagcagtcact
gctaagacagctttcttgcatttcgagaacatgaggagagcccacagagt
caaagcccaagcatgtgcttgactccctttgttgcggctggggcatcgtg
gtgctgctggcacaaaaggaaggcagggcaggttgggggggttgtctttg
aaatgcactggttcttacattttcttctttcccttcattctctatttcct
gatttcctcttcacagggtttgaaagtttatgggagaatggagaggaggg
acttaagtttgagttttgatgtttacagtgctagagatgaactccagcat
ctccaacatgaagagcaaggactccattactgagcatgccttagtgattt
cttgccatcgacacatgaacatagatttccccatcaactaatggggactt
gtgacatatgcatagtttggaactgaagcctgtggttactgccctgagtc
aggccaaaatcagaaggatgccttagggttttggctctttgatgtactgg
agacgaaaggcttggaa
gaattctttccttgtttgtactttacaggttttctccttgaatctgaggc
tcaccatcaattcagttaggcaggttagaaaaagaacttcagagatctaa
ctgtaacttacctcccctagtgctaatgaccatgcttgcttctgtgtggg
ttcttgggaacccaaattcaggtccttcttgatcaggcaggcactttacc
gattgtattacgtgttcagtaacagaataactttctcatctcccagtttt
gatttcttcacaatgtttagtagtgcctgaaataatcttgattattctat
tattttgtgtacacactatttatagtgcacctactatgtgtcaagcactg
tatgtacttgccataggattggaggcgccataaagtaaggatctttaact
gtccaggtcactcgagtctacacaggattctatagccctgggacctgcac
acagtaggcacatttctctattccgcgctcttcccggttagcccctcccc
cgctccaggaagtgagggggttctagccgcctggcctaccgcgatgcatt
ttgggaaagcagcagcaccagatccaagatggcggccagcaggaggctga
tgaaggtaaaagccattctctggcgctggccaggcggggggcggcgtccc
cgggccgggacccctacggcgggccgcggttccttggggcgacgccgttc
ttcatccctcattgcgtggccccgctgtgccgcgtgcggagagatctaac
ggggccgcctaggccgcagcctgggcgggagcgcaaggccgcgctgagag
ccgccgctgccggcccttcggatcagcctgggcagttctcgagctctctc
ctcctggagcgaagccgggccctccgtcgcagcggccgcggtccgggtcg
aggacgccgttgatgtgtggccgggcctggaggcccaagctggcgtcctc
gggaagaaagccggagcccggctgggagtacgcgcgcgagccgcccggtc
tgggccgcggtcgcgttctctgagcccaattcgcagccacaagcttcgga
ccggaggctgcgagtcgagacggaagaaggaggaggcagcgccaagttag
tcagtaatggtggtcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17049268_17050232
seq2: B6Ng01-117K15.b_46_1012

seq1  GAATTCCTCCAGTAGACCTGCAAAGCCAGCAACTGGCTGCCTCAAGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAGTAGACCTGCAAAGCCAGCAACTGGCTGCCTCAAGGACC  50

seq1  ATTCATGTCTTCAGGAAGTCACCAGAGTTGTGTCTCTCCAGAGAAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTCTTCAGGAAGTCACCAGAGTTGTGTCTCTCCAGAGAAGGGAG  100

seq1  AGAACATTTGAGCATATAAAAAACAAGACCTGGGGCTGGTGAGATGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTGAGCATATAAAAAACAAGACCTGGGGCTGGTGAGATGGTTC  150

seq1  AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGAAGTTCAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGAAGTTCAAATCC  200

seq1  CAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACTCCCT  250

seq1  CTTCTGGAGTGTCTGAAGATAGCTACAGTGTACTTACATATAATAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGTGTCTGAAGATAGCTACAGTGTACTTACATATAATAAAAAT  300

seq1  AAATAAATCTTAAAAGAAAAAAAAAAAAAAAAAACAAGACCTGTCTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTAAAAGAAAAAAAAAAAAAAAAAACAAGACCTGTCTACAG  350

seq1  AAAAGAGCACCAATGAGCTTGCCTGTAGTGAATTTGGTAGTATCCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCACCAATGAGCTTGCCTGTAGTGAATTTGGTAGTATCCCTCTG  400

seq1  GGGATTCATGAAGTGTGCTCTCAAAAGCAGAGCTCTGAAAAGCAGTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCATGAAGTGTGCTCTCAAAAGCAGAGCTCTGAAAAGCAGTCACT  450

seq1  GCTAAGACAGCTTTCTTGCATTTCGAGAACATGAGGAGAGCCCACAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACAGCTTTCTTGCATTTCGAGAACATGAGGAGAGCCCACAGAGT  500

seq1  CAAAGCCCAAGCATGTGCTTGACTCCCTTTGTTGCGGCTGGGGCATCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCAAGCATGTGCTTGACTCCCTTTGTTGCGGCTGGGGCATCGTG  550

seq1  GTGCTGCTGGCACAAAAGGAAGGCAGGGCAGGTTGGGGGGGTTGTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTGGCACAAAAGGAAGGCAGGGCAGGTTGGGGGGGTTGTCTTTG  600

seq1  AAATGCACTGGTTCTTACATTTTCTTCTTTCCCTTCATTCTCTATTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACTGGTTCTTACATTTTCTTCTTTCCCTTCATTCTCTATTTCCT  650

seq1  GATTTCCTCTTCACAGGG-TTGAAAGTTTATGGGAGAATGGAGAGGAGGG  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATTTCCTCTTCACAGGGTTTGAAAGTTTATGGGAGAATGGAGAGGAGGG  700

seq1  ACTTAAGTTTGAGTTTTGATGTTTACAGTGCTAGAGATGAACTCCAGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTTAAGTTTGAGTTTTGATGTTTACAGTGCTAGAGATGAACTCCAGCAT  750

seq1  CTCCAACATGAAGAGCAAGGACTCCATTACTGAGCATGCCTTAGTGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACATGAAGAGCAAGGACTCCATTACTGAGCATGCCTTAGTGATTT  800

seq1  CTTGCCATCGACACATGAACATAGATTTCCCCATCAACTAAT-GGGACTT  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGCCATCGACACATGAACATAGATTTCCCCATCAACTAATGGGGACTT  850

seq1  GTGACATATGCATAGTTTGGAACTGAAGCCTGTGG-TACTGCCCTGAGCC  897
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  GTGACATATGCATAGTTTGGAACTGAAGCCTGTGGTTACTGCCCTGAGTC  900

seq1  AGGCCAAAACCAGGAAGGATGCC-TAGGGTTTTGGCTCTTTGATGTACTG  946
      ||||||||| || |||||||||| ||||||||||||||||||||||||||
seq2  AGGCCAAAATCA-GAAGGATGCCTTAGGGTTTTGGCTCTTTGATGTACTG  949

seq1  GAGACAGAGAGGCTTGGAA  965
      ||||| || ||||||||||
seq2  GAGAC-GAAAGGCTTGGAA  967

seq1: chr16_17200990_17202132
seq2: B6Ng01-117K15.g_66_1183 (reverse)

seq1  AAAGACCACCAACTAACTGACCTAACTTTGGCCGCCTGCCCTCCTCCTTC  50
      |||||||||||  | ||||| ||||| |||||   ||| |||||||||||
seq2  AAAGACCACCA--TTACTGA-CTAAC-TTGGC--GCTG-CCTCCTCCTTC  43

seq1  CTTTCCCGTCTCGGGCCTCGCAGCCTCCCGGTCCCGGAGCTGTGGGCTGG  100
         | |||||||  | |||||||||| ||||| ||| ||||   ||||| 
seq2  ---TTCCGTCTC--GACTCGCAGCCT-CCGGT-CCGAAGCTTGTGGCTG-  85

seq1  CGGAATGGGGCTCAGAGAACGGCGACCGCGGCCCAGGACCGGGCGGCTCC  150
        |||| ||||||||||||| |||||||||||||| |||||||||||| |
seq2  -CGAATTGGGCTCAGAGAAC-GCGACCGCGGCCCA-GACCGGGCGGCT-C  131

seq1  GCGGCGCGTACTCCCAGCCGGGGCTCCGGCTTTCTTCCCCGAGGGCGCCC  200
      || |||||||||||||||| |||||||||||||||| ||||||| || ||
seq2  GC-GCGCGTACTCCCAGCC-GGGCTCCGGCTTTCTT-CCCGAGGACG-CC  177

seq1  AGCTTGGGGCCTCCAGGCCCGGCCCACACATCAACGGCGTCCTCGACCCG  250
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTT-GGGCCTCCAGGCCCGG-CCACACATCAACGGCGTCCTCGACCCG  225

seq1  GACCGCGGCCGCTGCGACGGAGGGCCCGGCTTCGCTCCAGGAGGAGGGGG  300
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  GACCGCGGCCGCTGCGACGGAGGGCCCGGCTTCGCTCCAGGAGGAGAGAG  275

seq1  CTCGAGAACTGCCCAGGCTGATCCGAAGGGCCGGCAGCGGCGGCTCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGAACTGCCCAGGCTGATCCGAAGGGCCGGCAGCGGCGGCTCTCAG  325

seq1  CGCGGCCTTGCGCTCCCGCCCAGGCTGCGGCCTAGGCGGCCCCGTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCCTTGCGCTCCCGCCCAGGCTGCGGCCTAGGCGGCCCCGTTAGAT  375

seq1  CTCTCCGCACGCGGCACAGCGGGGCCACGCAATGAGGGATGAAGAACGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGCACGCGGCACAGCGGGGCCACGCAATGAGGGATGAAGAACGGC  425

seq1  GTCGCCCCAAGGAACCGCGGCCCGCCGTAGGGGTCCCGGCCCGGGGACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCCCAAGGAACCGCGGCCCGCCGTAGGGGTCCCGGCCCGGGGACGC  475

seq1  CGCCCCCCGCCTGGCCAGCGCCAGAGAATGGCTTTTACCTTCATCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCCGCCTGGCCAGCGCCAGAGAATGGCTTTTACCTTCATCAGCCT  525

seq1  CCTGCTGGCCGCCATCTTGGATCTGGTGCTGCTGCTTTCCCAAAATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGCCGCCATCTTGGATCTGGTGCTGCTGCTTTCCCAAAATGCAT  575

seq1  CGCGGTAGGCCAGGCGGCTAGAACCCCCTCACTTCCTGGAGCGGGGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTAGGCCAGGCGGCTAGAACCCCCTCACTTCCTGGAGCGGGGGAGG  625

seq1  GGCTAACCGGGAAGAGCGCGGAATAGAGAAATGTGCCTACTGTGTGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACCGGGAAGAGCGCGGAATAGAGAAATGTGCCTACTGTGTGCAGG  675

seq1  TCCCAGGGCTATAGAATCCTGTGTAGACTCGAGTGACCTGGACAGTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCTATAGAATCCTGTGTAGACTCGAGTGACCTGGACAGTTAAA  725

seq1  GATCCTTACTTTATGGCGCCTCCAATCCTATGGCAAGTACATACAGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTACTTTATGGCGCCTCCAATCCTATGGCAAGTACATACAGTGCT  775

seq1  TGACACATAGTAGGTGCACTATAAATAGTGTGTACACAAAATAATAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATAGTAGGTGCACTATAAATAGTGTGTACACAAAATAATAGAAT  825

seq1  AATCAAGATTATTTCAGGCACTACTAAACATTGTGAAGAAATCAAAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGATTATTTCAGGCACTACTAAACATTGTGAAGAAATCAAAACTG  875

seq1  GGAGATGAGAAAGTTATTCTGTTACTGAACACGTAATACAATCGGTAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAGAAAGTTATTCTGTTACTGAACACGTAATACAATCGGTAAAG  925

seq1  TGCCTGCCTGATCAAGAAGGACCTGAATTTGGGTTCCCAAGAACCCACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTGATCAAGAAGGACCTGAATTTGGGTTCCCAAGAACCCACAC  975

seq1  AGAAGCAAGCATGGTCATTAGCACTAGGGGAGGTAAGTTACAGTTAGATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGCATGGTCATTAGCACTAGGGGAGGTAAGTTACAGTTAGATC  1025

seq1  TCTGAAGTTCTTTTTCTAACCTGCCTAACTGAATTGATGGTGAGCCTCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTTCTTTTTCTAACCTGCCTAACTGAATTGATGGTGAGCCTCAG  1075

seq1  ATTCAAGGAGAAAACCTGTAAAGTACAAACAAGGAAAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGAGAAAACCTGTAAAGTACAAACAAGGAAAGAATTC  1118