BAC Information

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BAC

Clone NameB6Ng01-118C03
Chromosome16 (Build37)
Map Location 80,332,678 - 80,500,082
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C03.bB6Ng01-118C03.g
ACCDH922694DH922695
length1,178737
definitionDH922694|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C03, 5' end.DH922695|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,498,893 - 80,500,082)(80,332,678 - 80,333,414)
sequence
gaattcaaatgatgacgtaagtcaaagaaaactagaaactgccacaattt
gcaacagaaaaaggatggttatttccattgaatatttacaaagatctctt
tacagaaagttcagagaatgtgatgtgtgtatacacactccacaatcaca
gaaatgaatgtcacttatttgaaaaattaaatcctatattaaaccacaaa
ttaataatttgacacagaacttagaagaaaatagtagatgggctctgaaa
tactatggtaagagattggtgggtagatgaggaggaaaagagagtaaaca
caaagaacattgtatattactaaaatattaaatacaaactactttcaagt
atgtgtacaaagtgcattctacctaattaataatacaattaatagaacta
taataggattaaaacataatcataaaatataaggaaaccaaatgattaca
cataaaataatatccattatgtttttcatttttgaattggagattttgat
tcttacttgtcaaattgtctaaggaaagattttatagctgtatttgttat
cattgagattaaacatccatgaccttcagcatttagagatcatgaattta
taacactatcatagtgtcaatacagtaattgtgtttctagtggataatgg
tactggaaagtatatgtttatctagataagataattcactacctatatct
ccctcaattaagttaagctgaatgagttgagaatagagataaatacattg
tacatatgtttatattatgttttcagagtcaaattagcagtccattatgt
gtttgttcaaaataattaatgaagtagtacttaattatgatctataatcc
agccaataaatatgttgattctagtagtgaattgttaattatttttattg
tactctgaattaggaagatatatatatatacacatacacatgtatatttt
atatgtatatatacatgcatatgggtaactttgattcatcaaaaccacaa
acctagttataggcccaagaatagtgtcacagaaaattgtgtccctgctc
cttacgccccttttcttgggtaagtacaactacctagccttatcaaatct
tctctttacggatgtgaaataataccgaaatccaataggtcactagcaag
atttgctgaaagaatagctgactttgtg
gaattcatgcactggtaatgcaatagccctcaaagttactgagtctttct
atatcactttgtttgctattatttggttcttattccttaaaataataatt
taatttttttcatagctctatatttgttacattgatcaaataacatattt
tgtcaacataattcctacatttggaaaatataacataaaagtattataat
aattgtatatctgctttatacaatgagtgtaaaacaatattctacataac
aacttgaacccccaaaatatatactgccctttatactctattccgtatat
taataataacaaaagtttcatgaaatttatttgaaaaagtatctgcaaga
tgaaaagttccatttttttgtttattttgtttttgttttttgtttttttt
agaacatgggaaaattacaaaaaaaattacaacattttaaaactcagaga
ctcaaactcttcatcaaggattattgagatcatctacttaggtatcaaaa
agtaatcaatcttactgtaaaattgagtagatactaaacatcgtaataga
caattgtagtctttacagaataaaacactcttaaggcatattcaaatcca
gctgaaaataaggaaaattaaagtagtctcagtgtattacatagaaccat
ttgagtgacttctaagccacaaaatacagaaactttttataacatatgga
aggtcttcccttcccttcccttcccttcccttacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80498893_80500082
seq2: B6Ng01-118C03.b_47_1224 (reverse)

seq1  CACAAGAGTCAGCTATATCCTTTCAGCAAAATCTTGCTAGTGTACCTATT  50
      ||||| |||||||  ||| |||||||| |||||||||||||| |||||||
seq2  CACAA-AGTCAGC--TATTCTTTCAGC-AAATCTTGCTAGTG-ACCTATT  45

seq1  GTGATTTTCTGTTATTATTTTTCACATCCTGTAAAGAGAAGATTTTGATA  100
      | |||||   | |||||  |||||||||| |||||||||||| |||||||
seq2  G-GATTT--CGGTATTA--TTTCACATCC-GTAAAGAGAAGA-TTTGATA  88

seq1  AGGCTAGGTAGTTGTACTTACCCAAGAAAAGGTGCGTAAGGAGCAGGGGA  150
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  AGGCTAGGTAGTTGTACTTACCCAAGAAAAGGGGCGTAAGGAGCA-GGGA  137

seq1  CAC-ATTTTCTGTGACACTATTCTTGGGCCTATAACTAGGTTTGTGGTTT  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTCTGTGACACTATTCTTGGGCCTATAACTAGGTTTGTGGTTT  187

seq1  TGATGAATCAAAGTTACCCATATGCATGTATATATACATATAAAATATAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATCAAAGTTACCCATATGCATGTATATATACATATAAAATATAC  237

seq1  ATGTGTATGTGTATATATATATATCTTCCTAATTCAGAGTACAATAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGTGTATATATATATATCTTCCTAATTCAGAGTACAATAAAAA  287

seq1  TAATTAACAATTCACTACTAGAATCAACATATTTATTGGCTGGATTATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAATTCACTACTAGAATCAACATATTTATTGGCTGGATTATAG  337

seq1  ATCATAATTAAGTACTACTTCATTAATTATTTTGAACAAACACATAATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATTAAGTACTACTTCATTAATTATTTTGAACAAACACATAATGG  387

seq1  ACTGCTAATTTGACTCTGAAAACATAATATAAACATATGTACAATGTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAATTTGACTCTGAAAACATAATATAAACATATGTACAATGTATT  437

seq1  TATCTCTATTCTCAACTCATTCAGCTTAACTTAATTGAGGGAGATATAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATTCTCAACTCATTCAGCTTAACTTAATTGAGGGAGATATAGG  487

seq1  TAGTGAATTATCTTATCTAGATAAACATATACTTTCCAGTACCATTATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATTATCTTATCTAGATAAACATATACTTTCCAGTACCATTATCC  537

seq1  ACTAGAAACACAATTACTGTATTGACACTATGATAGTGTTATAAATTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAACACAATTACTGTATTGACACTATGATAGTGTTATAAATTCAT  587

seq1  GATCTCTAAATGCTGAAGGTCATGGATGTTTAATCTCAATGATAACAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAAATGCTGAAGGTCATGGATGTTTAATCTCAATGATAACAAAT  637

seq1  ACAGCTATAAAATCTTTCCTTAGACAATTTGACAAGTAAGAATCAAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATAAAATCTTTCCTTAGACAATTTGACAAGTAAGAATCAAAATC  687

seq1  TCCAATTCAAAAATGAAAAACATAATGGATATTATTTTATGTGTAATCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCAAAAATGAAAAACATAATGGATATTATTTTATGTGTAATCAT  737

seq1  TTGGTTTCCTTATATTTTATGATTATGTTTTAATCCTATTATAGTTCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCCTTATATTTTATGATTATGTTTTAATCCTATTATAGTTCTAT  787

seq1  TAATTGTATTATTAATTAGGTAGAATGCACTTTGTACACATACTTGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATTATTAATTAGGTAGAATGCACTTTGTACACATACTTGAAAG  837

seq1  TAGTTTGTATTTAATATTTTAGTAATATACAATGTTCTTTGTGTTTACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTATTTAATATTTTAGTAATATACAATGTTCTTTGTGTTTACTC  887

seq1  TCTTTTCCTCCTCATCTACCCACCAATCTCTTACCATAGTATTTCAGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTCCTCATCTACCCACCAATCTCTTACCATAGTATTTCAGAGC  937

seq1  CCATCTACTATTTTCTTCTAAGTTCTGTGTCAAATTATTAATTTGTGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACTATTTTCTTCTAAGTTCTGTGTCAAATTATTAATTTGTGGTT  987

seq1  TAATATAGGATTTAATTTTTCAAATAAGTGACATTCATTTCTGTGATTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGGATTTAATTTTTCAAATAAGTGACATTCATTTCTGTGATTGT  1037

seq1  GGAGTGTGTATACACACATCACATTCTCTGAACTTTCTGTAAAGAGATCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTATACACACATCACATTCTCTGAACTTTCTGTAAAGAGATCT  1087

seq1  TTGTAAATATTCAATGGAAATAACCATCCTTTTTCTGTTGCAAATTGTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATATTCAATGGAAATAACCATCCTTTTTCTGTTGCAAATTGTGG  1137

seq1  CAGTTTCTAGTTTTCTTTGACTTACGTCATCATTTGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTAGTTTTCTTTGACTTACGTCATCATTTGAATTC  1178

seq1: chr16_80332678_80333414
seq2: B6Ng01-118C03.g_67_803

seq1  GAATTCATGCACTGGTAATGCAATAGCCCTCAAAGTTACTGAGTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCACTGGTAATGCAATAGCCCTCAAAGTTACTGAGTCTTTCT  50

seq1  ATATCACTTTGTTTGCTATTATTTGGTTCTTATTCCTTAAAATAATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTTTGTTTGCTATTATTTGGTTCTTATTCCTTAAAATAATAATT  100

seq1  TAATTTTTTTCATAGCTCTATATTTGTTACATTGATCAAATAACATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTCATAGCTCTATATTTGTTACATTGATCAAATAACATATTT  150

seq1  TGTCAACATAATTCCTACATTTGGAAAATATAACATAAAAGTATTATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACATAATTCCTACATTTGGAAAATATAACATAAAAGTATTATAAT  200

seq1  AATTGTATATCTGCTTTATACAATGAGTGTAAAACAATATTCTACATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATATCTGCTTTATACAATGAGTGTAAAACAATATTCTACATAAC  250

seq1  AACTTGAACCCCCAAAATATATACTGCCCTTTATACTCTATTCCGTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAACCCCCAAAATATATACTGCCCTTTATACTCTATTCCGTATAT  300

seq1  TAATAATAACAAAAGTTTCATGAAATTTATTTGAAAAAGTATCTGCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAACAAAAGTTTCATGAAATTTATTTGAAAAAGTATCTGCAAGA  350

seq1  TGAAAAGTTCCATTTTTTTGTTTATTTTGTTTTTGTTTTTTGTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTCCATTTTTTTGTTTATTTTGTTTTTGTTTTTTGTTTTTTTT  400

seq1  AGAACATGGGAAAATTACAAAAAAAATTACAACATTTTAAAACTCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGGGAAAATTACAAAAAAAATTACAACATTTTAAAACTCAGAGA  450

seq1  CTCAAACTCTTCATCAAGGATTATTGAGATCATCTACTTAGGTATCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCTTCATCAAGGATTATTGAGATCATCTACTTAGGTATCAAAA  500

seq1  AGTAATCAATCTTACTGTAAAATTGAGTAGATACTAAACATCGTAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCAATCTTACTGTAAAATTGAGTAGATACTAAACATCGTAATAGA  550

seq1  CAATTGTAGTCTTTACAGAATAAAACACTCTTAAGGCATATTCAAATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAGTCTTTACAGAATAAAACACTCTTAAGGCATATTCAAATCCA  600

seq1  GCTGAAAATAAGGAAAATTAAAGTAGTCTCAGTGTATTACATAGAACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAATAAGGAAAATTAAAGTAGTCTCAGTGTATTACATAGAACCAT  650

seq1  TTGAGTGACTTCTAAGCCACAAAATACAGAAACTTTTTATAACATATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGACTTCTAAGCCACAAAATACAGAAACTTTTTATAACATATGGA  700

seq1  AGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTT  737
      |||||||||||||||||||||||||||||||| ||||
seq2  AGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTACCTT  737