BAC Information

Click to search

BAC

Clone NameB6Ng01-119F01
Chromosome16 (Build37)16 (Build37)
Map Location 94,078,103 - 94,078,92794,436,474 - 94,437,123
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
Downstream geneSim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119F01.bB6Ng01-119F01.g
ACCDH923565DH923566
length829651
definitionDH923565|Mus musculus domesticus DNA, BAC clone: B6Ng01-119F01, 5' end.DH923566|Mus musculus domesticus DNA, BAC clone: B6Ng01-119F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,078,103 - 94,078,927)(94,436,474 - 94,437,123)
sequence
gaattccagaactttctgcaagctaatctcttcagggatctactgccatt
catttgtcagaattggctccgagatagatagatagatagatagatagata
gatagatagatagatagatagatagacaggtagataggataaacagaata
taaataagtcaactgttactgtgggcgccagggtgctgcttaaacggggc
acggggtgtccttctggtcaattaccaggcatcgataagcactttgtaaa
ttatttccctgtgtgtgggtaacaaaagcaagccccccaataattcagta
atgaaagcaggtccccatgtgacctttcaaggcttaaatagttttaaagg
tatttgaaatctctacttggtccaggcactgtacacatctacctcagcta
ctctctgaaagcggcttctgcatgcttcccaccctccacccccgccccgc
cgctgcagggatttactgagaagctggggttctccataaacacttctagc
accctctatcctggtcaccctacgcctagtgcggggcctggcaaatggaa
aatctccaaaaataaataactctgaagttttaactggcttccactccctc
gattccgttccactgctcgcgcttgcacctgtctcctgtccctaaaaaga
cagtgactcgcagcctggatgacaggcccctgaacccctgtttaattcca
acgagaggaaagcacagagaaccctgtagcctgaaaaagagtccctgtgc
acatccgcggattgcaagaagaaccaatcccacagcgaacaagaatattt
tgtcctcaggttgggggtggggtggggga
gaattcaattcccaacaactccctgatggctcacaaccatctgtaatggg
agccaatgctttcttctggggtgtgtgtgtgtgtgtgtgtgtgtgtgaag
acagctacagtgtactcacatacataaaataagcatatcttctagaaaag
agagagagaaagaaagcaagcagttataattgttctccctgagctcacat
cctgactacagtgtcctgacttcattggaagatactgcatctgggagaga
gtcagcccacttatccctgtttttggggtgaagccacatagctggtcccc
caccccacatcctgttccagcccagggcctacctagactgcagtgtgtgc
actgcactgggttttggtaacccagaagtggaagtgcaccaccaggctcc
tatggtggcccagcgaagacaaagttccttggttgttccagtcaactctt
tctgaagtgtgagtgacaagcagcagcttttatttggggcattattttct
ttacactctaggaattacttggaattatatagtagagccaaaatagaagc
ttaatgaaacccttagaggaactacgaaactagtactcaaattcattaag
atctctaggttgtcaggcagtggtcacagcagtcaattaatcccggcaat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94078103_94078927
seq2: B6Ng01-119F01.b_46_874

seq1  GAATTCCAGAACTTTCTGCAAGCTAATCTCTTCAGGGATCTACTGCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACTTTCTGCAAGCTAATCTCTTCAGGGATCTACTGCCATT  50

seq1  CATTTGTCAGAATTGGCTCCG----AGATAGATAGATAGATAGATAGATA  96
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  CATTTGTCAGAATTGGCTCCGAGATAGATAGATAGATAGATAGATAGATA  100

seq1  GATAGATAGATAGATAGATAGATAGACAGGTAGATAGGATAAACAGAATA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGACAGGTAGATAGGATAAACAGAATA  150

seq1  TAAATAAGTCAACTGTTACTGTGGGCGCCAGGGTGCTGCTTAAACGGGGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTCAACTGTTACTGTGGGCGCCAGGGTGCTGCTTAAACGGGGC  200

seq1  ACGGGGTGTCCTTCTGGTCAATTACCAGGCATCGATAAGCACTTTGTAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGTGTCCTTCTGGTCAATTACCAGGCATCGATAAGCACTTTGTAAA  250

seq1  TTATTTCCCTGTGTGTGGGTAACAAAAGCAAGCCCCCCAATAATTCAGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCTGTGTGTGGGTAACAAAAGCAAGCCCCCCAATAATTCAGTA  300

seq1  ATGAAAGCAGGTCCCCATGTGACCTTTCAAGGCTTAAATAGTTTTAAAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCAGGTCCCCATGTGACCTTTCAAGGCTTAAATAGTTTTAAAGG  350

seq1  TATTTGAAATCTCTACTTGGTCCAGGCACTGTACACATCTACCTCAGCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAATCTCTACTTGGTCCAGGCACTGTACACATCTACCTCAGCTA  400

seq1  CTCTCTGAAAGCGGCTTCTGCATGCTTCCCACCCTCCACCCCCGCCCCGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAAAGCGGCTTCTGCATGCTTCCCACCCTCCACCCCCGCCCCGC  450

seq1  CGCTGCAGGGATTTACTGAGAAGCTGGGGTTCTCCATAAACACTTCTAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCAGGGATTTACTGAGAAGCTGGGGTTCTCCATAAACACTTCTAGC  500

seq1  ACCCTCTATCCTGGTCACCCTACGCCTAGTGCGGGGCCTGGCAAATGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTATCCTGGTCACCCTACGCCTAGTGCGGGGCCTGGCAAATGGAA  550

seq1  AATCTCCAAAAATAAATAACTCTGAAGTTTTAACTGGCTTCCACTCCCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCAAAAATAAATAACTCTGAAGTTTTAACTGGCTTCCACTCCCTC  600

seq1  GATTCCGTTCCACTGCTCGCGCTTGCACCTGTCTCCTGTCCCTAAAAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCGTTCCACTGCTCGCGCTTGCACCTGTCTCCTGTCCCTAAAAAGA  650

seq1  CAGTGACTCGCAGCCTGGATGACAGGCCCCTGAACCCCTGTTTAATTCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTCGCAGCCTGGATGACAGGCCCCTGAACCCCTGTTTAATTCCA  700

seq1  ACGAGAGGAAAGCACAGAGAACCCTGTAGCCTGAAAAAGAGTCCCTGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGGAAAGCACAGAGAACCCTGTAGCCTGAAAAAGAGTCCCTGTGC  750

seq1  ACATCCGCGGATTGCAAGAAGAACCAATCCCACAGCGAACAAGAATATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCGCGGATTGCAAGAAGAACCAATCCCACAGCGAACAAGAATATTT  800

seq1  TGTCCTCAGGTTGGGGGTGGGGTGGGGGA  825
      |||||||||||||||||||||||||||||
seq2  TGTCCTCAGGTTGGGGGTGGGGTGGGGGA  829

seq1: chr16_94436474_94437123
seq2: B6Ng01-119F01.g_68_718 (reverse)

seq1  GATTGCCGGGATTAAATGACTGCTGTGACCACTGCCTGACAACCTAGAGA  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATTGCCGGGATTAATTGACTGCTGTGACCACTGCCTGACAACCTAGAGA  50

seq1  TCTTAATG-ATTTGAGTACTAGTTTCGTAGTTCCTCTAAGGGTTTCATTA  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAATTTGAGTACTAGTTTCGTAGTTCCTCTAAGGGTTTCATTA  100

seq1  AGCTTCTATTTTGGCTCTACTATATAATTCCAAGTAATTCCTAGAGTGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTATTTTGGCTCTACTATATAATTCCAAGTAATTCCTAGAGTGTA  150

seq1  AAGAAAATAATGCCCCAAATAAAAGCTGCTGCTTGTCACTCACACTTCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAATGCCCCAAATAAAAGCTGCTGCTTGTCACTCACACTTCAG  200

seq1  AAAGAGTTGACTGGAACAACCAAGGAACTTTGTCTTCGCTGGGCCACCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTGACTGGAACAACCAAGGAACTTTGTCTTCGCTGGGCCACCAT  250

seq1  AGGAGCCTGGTGGTGCACTTCCACTTCTGGGTTACCAAAACCCAGTGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGGTGGTGCACTTCCACTTCTGGGTTACCAAAACCCAGTGCAG  300

seq1  TGCACACACTGCAGTCTAGGTAGGCCCTGGGCTGGAACAGGATGTGGGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACTGCAGTCTAGGTAGGCCCTGGGCTGGAACAGGATGTGGGGT  350

seq1  GGGGGACCAGCTATGTGGCTTCACCCCAAAAACAGGGATAAGTGGGCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACCAGCTATGTGGCTTCACCCCAAAAACAGGGATAAGTGGGCTGA  400

seq1  CTCTCTCCCAGATGCAGTATCTTCCAATGAAGTCAGGACACTGTAGTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCAGATGCAGTATCTTCCAATGAAGTCAGGACACTGTAGTCAG  450

seq1  GATGTGAGCTCAGGGAGAACAATTATAACTGCTTGCTTTCTTTCTCTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGCTCAGGGAGAACAATTATAACTGCTTGCTTTCTTTCTCTCTC  500

seq1  TCTTTTCTAGAAGATATGCTTATTTTATGTATGTGAGTACACTGTAGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTAGAAGATATGCTTATTTTATGTATGTGAGTACACTGTAGCTG  550

seq1  TCTTCACACACACACACACACACACACACACCCCAGAAGAAAGCATTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACACACACACACACACACACACACACCCCAGAAGAAAGCATTGGC  600

seq1  TCCCATTACAGATGGTTGTGAGCCATCAGGGAGTTGTTGGGAATTGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTACAGATGGTTGTGAGCCATCAGGGAGTTGTTGGGAATTGAATT  650

seq1  C  650
      |
seq2  C  651