BAC Information

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BAC

Clone NameB6Ng01-120B24
Chromosome16 (Build37)
Map Location 38,289,607 - 38,462,256
singlet/doubletdoublet
Overlap geneNr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b
Downstream geneLOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B24.bB6Ng01-120B24.g
ACCDH924151DH924152
length1,0931,136
definitionDH924151|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B24, 5' end.DH924152|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,461,163 - 38,462,256)(38,289,607 - 38,290,767)
sequence
gaattctaggccagcctgggcaacagagtgagaccctgactccagaaaac
cgaaacataaaatatttcagaagtatttatcagagcagttttaggttccc
agcagaattgggcagacacgcatgacggattcccacagaccgatcctgtc
ctcgacttccagcttcatctcctcagcagccacccatatcacagtgacac
atttgttacagtccacgaacctcctctgacacatcattatctcccaaagt
catgatttagcgtttccctctaggaggtgtgctttatatgtgcttgaaac
atctatgcataatagatacatcgttatagtattatgcaaaataatttcac
ttctctaaaaaaaaatcccctgtattggagactgtcttttaagaaacccc
caggtgttagatatgtataatatatagatagtgccaaccccacctccctc
taaaaccctcccaaccctcccccagtacaatttgagtaacattcagattt
tcaatggtgacctgaaagcctaggcctggctccttctggtcgtgatccag
ccactgaaaatagcacctctgaataatgccttctcttcaaagttctcctc
tctgcagtggtcacatatttaatgctatggttacaagatctcttgtcttc
ttccttccagtgactagggattacatgaaggaaaggactcataatttatc
cccaggaccaacaaacacatctttgtacccagaaactgcctgctatttgt
tgaattcaatgcttacaaagaacaagccacacagcttcaatgtagcccaa
ctggcaaagtgcttgcccagaatgtaagaaacccttgggtttgatctgta
atactgcacaaactgggcatggtagtagatgtctagaatcctagtattta
ggaggtagaggcaggaggatcaaaagttcaaagtcatccttcgttaccta
gtgagtaaggtagctagcctaggctacatgagaccctgtcagtctgatac
ccgcccccgaatcctccattgccatctggcctccgtcaggtcttctctca
acccccctacctccctcctttcttagatccctcagtgtcagta
gaattcagtgccctcttctgcctccgcggacatcagacacacacgtggtg
cagagacaacaggcaggcaagacaaccacaccaataaaaagaaatctcaa
aaaccaagcaaagaagtatggtatacggaccattcgatagagcacatcaa
cccaagactgttctctgtcacagatattgttcattttatgcatgatggcc
atgaaaaaaaaacagtaagaaaaaaattaagctatataagaaaaggaaga
ggtaaaaatctactgtacataaaaaatatgactttctatctagaaatccc
aaaggtatctattgcaacccttaagagaatttgatacagtgcccagataa
aacaactaaaaaccaaacagatctccaggagaaaagtttgaaaatatgag
atccatagtaggataggctcaggagcagggtctaagaagacaattatttt
actgtggtaacaagcgtaatgtttcaaatgagtcagggaacgatcaaccc
tttctagactaattcgttgaaataatcgcatgtgaactataaacctaatt
ttaagtcataaaagtttgctaaaataccttcttaattctaaaggctgaaa
aaaaagtctccttaaataagcttatcagagcaagaccaagagcaggaaac
aagtcctcctgtgtcgagtcaatggaagggatgctagcagtcaaacaagt
gacacagaatatgactccggctaaataaaggattagctccatgtacaagc
aacaggctcctttgaatgaggaaaatggctcagtacaagatgagctaagg
ctgggcacaaagccacatacttgtggtgccagcatttaggagtcagaggc
tggggagtcaggagttggaaggctaaccctagctacaggagcaagtctga
ggccagcctgggttacataggacctgtttcaaaaactgacaaacaaaaag
atgatctcagatataaataggcactaagaaagagaacaatataaaatata
gaaaagacctcagctggtctagaaggatgcttaggagggtaagagcatga
cagctatccagggaacaaagtttggcctcccagcaccagtggcagtcaca
cacatgggaaccaggtcagacctcatgcttctgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38461163_38462256
seq2: B6Ng01-120B24.b_46_1138 (reverse)

seq1  TACTGACACTGA-GGATCTGAGAAAGGAGGGA-GTAGGGGGGTTGGAGGA  48
      |||||||||||| |||||| |||||||||||| ||||||||||||   ||
seq2  TACTGACACTGAGGGATCTAAGAAAGGAGGGAGGTAGGGGGGTTG--AGA  48

seq1  GAAGACCTGACGGAGG-CAGATGGCAATGGAGGATTCGGGGGGCGGGTAT  97
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  GAAGACCTGACGGAGGCCAGATGGCAATGGAGGATTC-GGGGGCGGGTAT  97

seq1  CAGACTGACAGGGTCTCATGTAGCCTAGGCTAGCTACCCTTACTCACTAG  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGACTGACAGGGTCTCATGTAGCCTAGGCTAGCTA-CCTTACTCACTAG  146

seq1  GTAACGAAGGATGACTTTGAACTTTTGATCCTCCTGCCTCTACCTCCTAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGAAGGATGACTTTGAACTTTTGATCCTCCTGCCTCTACCTCCTAA  196

seq1  ATACTAGGATTCTAGACATCTACTACCATGCCCAGTTTGTGCAGTATTAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGGATTCTAGACATCTACTACCATGCCCAGTTTGTGCAGTATTAC  246

seq1  AGATCAAACCCAAGGGTTTCTTACATTCTGGGCAAGCACTTTGCCAGTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAACCCAAGGGTTTCTTACATTCTGGGCAAGCACTTTGCCAGTTG  296

seq1  GGCTACATTGAAGCTGTGTGGCTTGTTCTTTGTAAGCATTGAATTCAACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATTGAAGCTGTGTGGCTTGTTCTTTGTAAGCATTGAATTCAACA  346

seq1  AATAGCAGGCAGTTTCTGGGTACAAAGATGTGTTTGTTGGTCCTGGGGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGGCAGTTTCTGGGTACAAAGATGTGTTTGTTGGTCCTGGGGAT  396

seq1  AAATTATGAGTCCTTTCCTTCATGTAATCCCTAGTCACTGGAAGGAAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGAGTCCTTTCCTTCATGTAATCCCTAGTCACTGGAAGGAAGAA  446

seq1  GACAAGAGATCTTGTAACCATAGCATTAAATATGTGACCACTGCAGAGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGATCTTGTAACCATAGCATTAAATATGTGACCACTGCAGAGAG  496

seq1  GAGAACTTTGAAGAGAAGGCATTATTCAGAGGTGCTATTTTCAGTGGCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTTTGAAGAGAAGGCATTATTCAGAGGTGCTATTTTCAGTGGCTG  546

seq1  GATCACGACCAGAAGGAGCCAGGCCTAGGCTTTCAGGTCACCATTGAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACGACCAGAAGGAGCCAGGCCTAGGCTTTCAGGTCACCATTGAAAA  596

seq1  TCTGAATGTTACTCAAATTGTACTGGGGGAGGGTTGGGAGGGTTTTAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGTTACTCAAATTGTACTGGGGGAGGGTTGGGAGGGTTTTAGAG  646

seq1  GGAGGTGGGGTTGGCACTATCTATATATTATACATATCTAACACCTGGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGGGTTGGCACTATCTATATATTATACATATCTAACACCTGGGG  696

seq1  GTTTCTTAAAAGACAGTCTCCAATACAGGGGATTTTTTTTTAGAGAAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAAAAGACAGTCTCCAATACAGGGGATTTTTTTTTAGAGAAGTG  746

seq1  AAATTATTTTGCATAATACTATAACGATGTATCTATTATGCATAGATGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTGCATAATACTATAACGATGTATCTATTATGCATAGATGTT  796

seq1  TCAAGCACATATAAAGCACACCTCCTAGAGGGAAACGCTAAATCATGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACATATAAAGCACACCTCCTAGAGGGAAACGCTAAATCATGACT  846

seq1  TTGGGAGATAATGATGTGTCAGAGGAGGTTCGTGGACTGTAACAAATGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGATAATGATGTGTCAGAGGAGGTTCGTGGACTGTAACAAATGTG  896

seq1  TCACTGTGATATGGGTGGCTGCTGAGGAGATGAAGCTGGAAGTCGAGGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGATATGGGTGGCTGCTGAGGAGATGAAGCTGGAAGTCGAGGAC  946

seq1  AGGATCGGTCTGTGGGAATCCGTCATGCGTGTCTGCCCAATTCTGCTGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCGGTCTGTGGGAATCCGTCATGCGTGTCTGCCCAATTCTGCTGGG  996

seq1  AACCTAAAACTGCTCTGATAAATACTTCTGAAATATTTTATGTTTCGGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAACTGCTCTGATAAATACTTCTGAAATATTTTATGTTTCGGTT  1046

seq1  TTCTGGAGTCAGGGTCTCACTCTGTTGCCCAGGCTGGCCTAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCAGGGTCTCACTCTGTTGCCCAGGCTGGCCTAGAATTC  1093

seq1: chr16_38289607_38290767
seq2: B6Ng01-120B24.g_66_1201

seq1  GAATTCAGTGCCCTCTTCTGCCTCCGCGGACATCAGACACACACGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCCTCTTCTGCCTCCGCGGACATCAGACACACACGTGGTG  50

seq1  CAGAGACAACAGGCAGGCAAGACAACCACACCAATAAAAAGAAATCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAACAGGCAGGCAAGACAACCACACCAATAAAAAGAAATCTCAA  100

seq1  AAACCAAGCAAAGAAGTATGGTATACGGACCATTCGATAGAGCACATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGCAAAGAAGTATGGTATACGGACCATTCGATAGAGCACATCAA  150

seq1  CCCAAGACTGTTCTCTGTCACAGATATTGTTCATTTTATGCATGATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACTGTTCTCTGTCACAGATATTGTTCATTTTATGCATGATGGCC  200

seq1  ATGAAAAAAAAACAGTAAGAAAAAAATTAAGCTATATAAGAAAAGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAAACAGTAAGAAAAAAATTAAGCTATATAAGAAAAGGAAGA  250

seq1  GGTAAAAATCTACTGTACATAAAAAATATGACTTTCTATCTAGAAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAATCTACTGTACATAAAAAATATGACTTTCTATCTAGAAATCCC  300

seq1  AAAGGTATCTATTGCAACCCTTAAGAGAATTTGATACAGTGCCCAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATCTATTGCAACCCTTAAGAGAATTTGATACAGTGCCCAGATAA  350

seq1  AACAACTAAAAACCAAACAGATCTCCAGGAGAAAAGTTTGAAAATATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTAAAAACCAAACAGATCTCCAGGAGAAAAGTTTGAAAATATGAG  400

seq1  ATCCATAGTAGGATAGGCTCAGGAGCAGGGTCTAAGAAGACAATTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAGTAGGATAGGCTCAGGAGCAGGGTCTAAGAAGACAATTATTTT  450

seq1  ACTGTGGTAACAAGCGTAATGTTTCAAATGAGTCAGGGAACGATCAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTAACAAGCGTAATGTTTCAAATGAGTCAGGGAACGATCAACCC  500

seq1  TTTCTAGACTAATTCGTTGAAATAATCGCATGTGAACTATAAACCTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGACTAATTCGTTGAAATAATCGCATGTGAACTATAAACCTAATT  550

seq1  TTAAGTCATAAAAGTTTGCTAAAATACCTTCTTAATTCTAAAGGCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCATAAAAGTTTGCTAAAATACCTTCTTAATTCTAAAGGCTGAAA  600

seq1  AAAAAGTCTCCTTAAATAAGCTTATCAGAGCAAGACCAAGAGCAGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTCCTTAAATAAGCTTATCAGAGCAAGACCAAGAGCAGGAAAC  650

seq1  AAGTCCTCCTGTGTCGAGTCAATGGAA-GGATGCTAGCAGTCAAACAAGT  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTCCTCCTGTGTCGAGTCAATGGAAGGGATGCTAGCAGTCAAACAAGT  700

seq1  GACACAGAATATGACTCCGGCTAAATAAAGGATTAGCTCCATGTACAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAATATGACTCCGGCTAAATAAAGGATTAGCTCCATGTACAAGC  750

seq1  AACAGGCTCCTTTGAATGAGGAAAATGGCTCAGTACAAGATGAGCTAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTCCTTTGAATGAGGAAAATGGCTCAGTACAAGATGAGCTAAGG  800

seq1  CTGGGCACAAAGCCACATACTTGTGGTGCCAGCATTTAGGAGTCAGAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACAAAGCCACATACTTGTGGTGCCAGCATTTAGGAGTCAGAGGC  850

seq1  TGGGAGGTCAGGAGTT-GAAGGCTAACCCTAGCTACA-GAGCAAGTCTGA  897
      ||||  |||||||||| |||||||||||||||||||| ||||||||||||
seq2  TGGGGAGTCAGGAGTTGGAAGGCTAACCCTAGCTACAGGAGCAAGTCTGA  900

seq1  GGCCAGCCTGGGTTACATAGGACCCTGTTTCAAAAAACTGAACAAACAAA  947
      |||||||||||||||||||||| |||||||| |||||||| |||||| ||
seq2  GGCCAGCCTGGGTTACATAGGA-CCTGTTTC-AAAAACTG-ACAAAC-AA  946

seq1  AAAGATGATCTCAGGATATAAATAGGCAACTTAAGAAAGAGGAACATATT  997
      ||||||||||||| ||||||||||||||   ||||||||| ||||  | |
seq2  AAAGATGATCTCA-GATATAAATAGGCA--CTAAGAAAGA-GAAC--AAT  990

seq1  ATAAAATTATAGAAAAAGAACACTCAGCTGGGTCTAGAGAGATGGCTTTA  1047
      |||||| ||||| ||||||   ||||||| ||||||||  ||| ||||  
seq2  ATAAAA-TATAG-AAAAGA--CCTCAGCT-GGTCTAGAAGGAT-GCTTAG  1034

seq1  GAGGGTAAGAGCATTGACAGCTATCACAGGGGACCAGAGTTTGG-CTCCC  1096
      ||||||||||||| ||||||||||| || |||| || ||||||| |||||
seq2  GAGGGTAAGAGCA-TGACAGCTATC-CA-GGGAACAAAGTTTGGCCTCCC  1081

seq1  AGCACCCATGTGGCAGTTCACAACCACTGGGAAACCAAGTCCCAGGACAC  1146
      ||||||   ||||||| |||||  |||  || ||||| |||    ||| |
seq2  AGCACC--AGTGGCAG-TCACA--CACATGGGAACCAGGTC---AGAC-C  1122

seq1  TCAATGCTTCTGATC  1161
      || ||||||||||||
seq2  TC-ATGCTTCTGATC  1136