BAC Information

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BAC

Clone NameB6Ng01-120O04
Chromosome16 (Build37)
Map Location 4,664,991 - 4,734,626
singlet/doubletdoublet
Overlap geneCoro7, Dnaja3, Nmral1
Upstream geneMefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Vasn
Downstream geneHmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120O04.bB6Ng01-120O04.g
ACCDH924712DH924713
length1,1221,070
definitionDH924712|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O04, 5' end.DH924713|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,733,541 - 4,734,626)(4,664,991 - 4,666,061)
sequence
gaattccaggacaggcagggctatacagagaaaccctgtctcaaaaaacc
aaaaaaaaaaaaaaaaaagaggaaagaaaaaagaaacagaggcaaaggta
gaggcaaattgttgaagtttggccctggttcttccttccagcctcatgct
cccagaaataaaactcagactcaaaatatatttacaaataccttggccat
atagctaggctcttctctgagtaaacataacttaaaatagcccatgtttt
ctaacctacattctgccacatggctggttacctgtgcaaaggtaccatgc
atccatctcatcacatcttcccaacaaatttcccacctcctcctctacca
gaattctttctcctctcaatgtcccaccttctatttcttgcctaagccat
agaccacaggcatcttaatggataggtgatgcatccatacaataaataca
taagatgttctctctttagtccaataaaaggttctttgtctggtctacac
aataaagtcagagtggggccctctgatgatagattcagctacttgcaaat
gactaaacttcagaatgacacatttataaattaaagatagtatgtagatt
tttgtttaagaataagtataaatatccttaatagttttaaaaaataaata
cagctgggcatggtggcacatgcctttaatcccagcacttgggaggcaga
ggcaggcggatttctgagttcgaggccatcctggctacagagtgagttcc
aggacagccaggactacacagagaaaccctgtctcaaaaaaaccaatcaa
tcaatcaatcaaccaatcaataaatacgcatcagtgggctggggagatgg
ctcagcagttaaaacactgactgttcttcagaagtcctgagttcaaatcc
cagcacatggtggctcacaaccatctgtaatgagatctgacgccctcttc
tcgtgtgtctgaagacagctacagtgtactgagatataataataagtaaa
tcttaaaaaaaaacaaaaaaaataataccatcaactccttttttgtttaa
tttgttttgttcttttttgggaattttggaatttatttttactataagga
tttttctcatttacatttccaa
gaattcactatgtagaccaggctggctttgaacttggagagacctcccta
cctctgcctcaggactgctgggaataaaagcatgcatcatgcctggtttg
ggggcgtgaaatgctgactcagtagttaagtgctcttatcgctgtcaaag
aggaccaggttcaatcaatccccagctctcattcacaaccattgttgact
ccaactgcaggggtccatagccctcttctgacctccatgagcaacaagca
tgcactggtgagcatacaaatatgcaggcaaaactcttgcacagaaaaga
aaatgaatatatactgggggaaaggtagacagtgattagagaaagccacc
aatgtccggtctacatgtactgcacacccctctccaacatggagacacat
cagcaaacaacctcatgaaaactggacttcagtttctaataatttatcaa
tatttatataattgtaacaatgtatctaactaatgcaaaaggtaataagg
agaagcaggcatgagatatgttggtaatcccagcacttgcaaggctgagg
cagtagaaggtttccaaattcaaggtcggcctgggttatataaaatacag
taacaggtctgagcatggaggcacatgcctttaatcccagcactaaggag
gcagaggcaggtggctctccatgaggtcagtctgatctatggagccagtt
ccaggtcagtcagggatacgtggtaagaacccgactcaaaacaattcatc
ttatatacaacaaggtaacaaaggaaatggatgtggaggggaaatatatg
aactttctgtattacctgctatatttcctctacaaaacagtctgctaaat
aaaactaaaactgccaagaagtgactcgcacctacaatgccggtggtcag
aaagtggaagcagatcactttgaatctgatgccaacttggattatgtaag
tgaagttacaggtcagcttgagctacagctaagcttaaactataacctga
gatctgcctcaaaatattgttttggggtgctagaagagatggctcagcag
tttagaggcactggaaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4733541_4734626
seq2: B6Ng01-120O04.b_106_1167 (reverse)

seq1  TTGGAAATGTAAATGAAGAAAATACCTAATAAGTAAAAAAATAAAAATCA  50
      ||||||||||||||| ||||||  ||| || ||||||||    ||| || 
seq2  TTGGAAATGTAAATG-AGAAAAATCCTTAT-AGTAAAAA---TAAATTC-  44

seq1  CAAAAAATCACAAAAAAAGAAACAAAAACAAAATAAAAAACAAAAAAAGA  100
         |||||  | |||||||||   |||||||| |   |||||||||| ||
seq2  --CAAAATTCCCAAAAAAGAA--CAAAACAAATT---AAACAAAAAAGGA  87

seq1  GATTGATGTGTATTTATTTTTTTTTTGTTTTTTTTTTTAAGATTTACTTA  150
      | |||||| ||| ||||||||||    | |||||||||||||||||||||
seq2  G-TTGATG-GTA-TTATTTTTTT----TGTTTTTTTTTAAGATTTACTTA  130

seq1  TTATTATATCTCAGTACACTGTAGCTGTCTTCAGACACACGAGAAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATCTCAGTACACTGTAGCTGTCTTCAGACACACGAGAAGAGGG  180

seq1  CGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTTGCTGGGATTTG  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CGTCAGATCTCATTACAGATGGTTGTGAGCCACCATG-TGCTGGGATTTG  229

seq1  AACTCAGGACCTTCTGAAGAACAGTCAGTGTTCTTAACTGCTGAGCCATC  300
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  AACTCAGGA-CTTCTGAAGAACAGTCAGTGTT-TTAACTGCTGAGCCATC  277

seq1  TCCCCAGCCCACCTGATGCGTATTTATTGATTGGTTGATTGATTGATTGA  350
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCCCA-CTGATGCGTATTTATTGATTGGTTGATTGATTGATTGA  326

seq1  TTGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAA  376

seq1  CTCACTCTGTAGCCAGGATGGCCTCGAACTCAGAAATCCGCCTGCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGCCAGGATGGCCTCGAACTCAGAAATCCGCCTGCCTCTG  426

seq1  CCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCAGCTGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCAGCTGTATT  476

seq1  TATTTTTTAAAACTATTAAGGATATTTATACTTATTCTTAAACAAAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAAACTATTAAGGATATTTATACTTATTCTTAAACAAAAATC  526

seq1  TACATACTATCTTTAATTTATAAATGTGTCATTCTGAAGTTTAGTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACTATCTTTAATTTATAAATGTGTCATTCTGAAGTTTAGTCATTT  576

seq1  GCAAGTAGCTGAATCTATCATCAGAGGGCCCCACTCTGACTTTATTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGCTGAATCTATCATCAGAGGGCCCCACTCTGACTTTATTGTGT  626

seq1  AGACCAGACAAAGAACCTTTTATTGGACTAAAGAGAGAACATCTTATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACAAAGAACCTTTTATTGGACTAAAGAGAGAACATCTTATGTA  676

seq1  TTTATTGTATGGATGCATCACCTATCCATTAAGATGCCTGTGGTCTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTATGGATGCATCACCTATCCATTAAGATGCCTGTGGTCTATGG  726

seq1  CTTAGGCAAGAAATAGAAGGTGGGACATTGAGAGGAGAAAGAATTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAAGAAATAGAAGGTGGGACATTGAGAGGAGAAAGAATTCTGGT  776

seq1  AGAGGAGGAGGTGGGAAATTTGTTGGGAAGATGTGATGAGATGGATGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGAGGTGGGAAATTTGTTGGGAAGATGTGATGAGATGGATGCAT  826

seq1  GGTACCTTTGCACAGGTAACCAGCCATGTGGCAGAATGTAGGTTAGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTTGCACAGGTAACCAGCCATGTGGCAGAATGTAGGTTAGAAAA  876

seq1  CATGGGCTATTTTAAGTTATGTTTACTCAGAGAAGAGCCTAGCTATATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTATTTTAAGTTATGTTTACTCAGAGAAGAGCCTAGCTATATGG  926

seq1  CCAAGGTATTTGTAAATATATTTTGAGTCTGAGTTTTATTTCTGGGAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTATTTGTAAATATATTTTGAGTCTGAGTTTTATTTCTGGGAGCA  976

seq1  TGAGGCTGGAAGGAAGAACCAGGGCCAAACTTCAACAATTTGCCTCTACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGAAGGAAGAACCAGGGCCAAACTTCAACAATTTGCCTCTACC  1026

seq1  TTTGCCTCTGTTTCTTTTTTCTTTCCTCTTTTTTTT  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTGTTTCTTTTTTCTTTCCTCTTTTTTTT  1062

seq1: chr16_4664991_4666061
seq2: B6Ng01-120O04.g_65_1134

seq1  GAATTCACTATGTAGACCAGGCTGGCTTTGAACTTGGAGAGACCTCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGCTGGCTTTGAACTTGGAGAGACCTCCCTA  50

seq1  CCTCTGCCTCAGGACTGCTGGGAATAAAAGCATGCATCATGCCTGGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCAGGACTGCTGGGAATAAAAGCATGCATCATGCCTGGTTTG  100

seq1  GGGGCGTGAAATGCTGACTCAGTAGTTAAGTGCTCTTATCGCTGTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGAAATGCTGACTCAGTAGTTAAGTGCTCTTATCGCTGTCAAAG  150

seq1  AGGACCAGGTTCAATCAATCCCCAGCTCTCATTCACAACCATTGTTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGGTTCAATCAATCCCCAGCTCTCATTCACAACCATTGTTGACT  200

seq1  CCAACTGCAGGGGTCCATAGCCCTCTTCTGACCTCCATGAGCAACAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCAGGGGTCCATAGCCCTCTTCTGACCTCCATGAGCAACAAGCA  250

seq1  TGCACTGGTGAGCATACAAATATGCAGGCAAAACTCTTGCACAGAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGTGAGCATACAAATATGCAGGCAAAACTCTTGCACAGAAAAGA  300

seq1  AAATGAATATATACTGGGGGAAAGGTAGACAGTGATTAGAGAAAGCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATATATACTGGGGGAAAGGTAGACAGTGATTAGAGAAAGCCACC  350

seq1  AATGTCCGGTCTACATGTACTGCACACCCCTCTCCAACATGGAGACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCGGTCTACATGTACTGCACACCCCTCTCCAACATGGAGACACAT  400

seq1  CAGCAAACAACCTCATGAAAACTGGACTTCAGTTTCTAATAATTTATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACAACCTCATGAAAACTGGACTTCAGTTTCTAATAATTTATCAA  450

seq1  TATTTATATAATTGTAACAATGTATCTAACTAATGCAAAAGGTAATAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATAATTGTAACAATGTATCTAACTAATGCAAAAGGTAATAAGG  500

seq1  AGAAGCAGGCATGAGATATGTTGGTAATCCCAGCACTTGCAAGGCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGCATGAGATATGTTGGTAATCCCAGCACTTGCAAGGCTGAGG  550

seq1  CAGTAGAAGGTTTCCAAATTCAAGGTCGGCCTGGGTTATATAAAATACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAGGTTTCCAAATTCAAGGTCGGCCTGGGTTATATAAAATACAG  600

seq1  TAACAGGTCTGAGCATGGAGGCACATGCCTTTAATCCCAGCACTAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTCTGAGCATGGAGGCACATGCCTTTAATCCCAGCACTAAGGAG  650

seq1  GCAGAGGCAGGTGGCTCTCCATGAGGTCAGTCTGATCTATGGAGCCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGTGGCTCTCCATGAGGTCAGTCTGATCTATGGAGCCAGTT  700

seq1  CCAGGTCAGTCAGGGATACGTGGTAAGAACCCGACTCAAAACAATTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGTCAGGGATACGTGGTAAGAACCCGACTCAAAACAATTCATC  750

seq1  TTATATACAACAAGGTAACAAAGGAAATGGATGTGGAGGGGAAATATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACAACAAGGTAACAAAGGAAATGGATGTGGAGGGGAAATATATG  800

seq1  AACTTTCTGTATTACCTGCTATATTTCCTCTACAAAACAGTCTGCTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTGTATTACCTGCTATATTTCCTCTACAAAACAGTCTGCTAAAT  850

seq1  AAAACTAAAACTGCCAAGAAGTGACTCGCACCTACAATGCCGGTGGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAACTGCCAAGAAGTGACTCGCACCTACAATGCCGGTGGTCAG  900

seq1  AAAGTGGAAGCAGATCACTTTGAATCTGATGCCAACTTGGATTATGTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAGCAGATCACTTTGAATCTGATGCCAACTTGGATTATGTAAG  950

seq1  TGAAGTTACAGGTCAGCTTGAGCTACAGGCTAAGGCTTAAACTATAACCT  1000
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TGAAGTTACAGGTCAGCTTGAGCTACA-GCTAA-GCTTAAACTATAACCT  998

seq1  GAGATCCTGCCTCAAAATATGTTTTGGGGGTGCTAG-AGAGATGGCTCAG  1049
      ||||| ||||||||||||||  ||| |||||||||| |||||||||||||
seq2  GAGAT-CTGCCTCAAAATATTGTTTTGGGGTGCTAGAAGAGATGGCTCAG  1047

seq1  CAGTTTAGA-GCACTGGATATTA  1071
      ||||||||| |||||||| ||||
seq2  CAGTTTAGAGGCACTGGAAATTA  1070