BAC Information

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BAC

Clone NameB6Ng01-121M15
Chromosome16 (Build37)
Map Location 30,948,177 - 31,059,527
singlet/doubletdoublet
Overlap geneAI480653
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream geneCentb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M15.bB6Ng01-121M15.g
ACCDH925382DH925383
length1,1031,026
definitionDH925382|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M15, 5' end.DH925383|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,948,177 - 30,949,286)(31,058,478 - 31,059,527)
sequence
gaattcctcaggggaagtgctgtggagagtgagaagcagtgtgttcaggg
ccggtggcaggcggacagtcttcatgtgcatctgtaggctgatgtaaagg
gcagtgtagccatccttattaaaaagattccttcgggaaaccctgctgca
tgctgcggcatgggtgaatctttgaagatgttctgtggtgaagaagccag
cgacagaggtgactacagtaagatgctaccatcctgggggtttctaaagt
catcaggttcatagaaacaggaagtagagttatagtggtggttgccagga
gattcagggaggaggaaataggatgttgctcagtgagaatagagtttcta
ttttgttagttggggaagccacagagagcgggtgcaccatgtgaggaatg
ttcacacttgcagagctgtgaacttagaaatgactaagatgatacatttt
tgcactgtgtggtagtgtgttctattttggttttgtttgtttgttttgtg
ggtttttttaaagacaggattttttaaaattaatttaatttgcaaaaatg
tttcttctaaattgaagcattccctcccagagggagaagggcatctcact
ctgggctctggagacttggcagtcaacacattttgcaagctcagagagct
gaaccccccagattcacgttatagagggagtgaagaatccctgcctacca
gagactcactcagctgcctggaggagattatcccatcttgtctgcaggct
gtgcagaacccatggttgcagctgttgtgaagttctcacccaggcaaggg
tgggctttgtagagattcaagttccctttgagttgtgtgtgctcctggga
agtagctctcacccatactcctaaaaataaccaatatactcacaagctag
acttgggttgaattgtttctttggtctctcattggcttcctattcaggtg
actagacatgtgtctctcagagaagtcccatgctacatgagtggctactc
atttaggtcacagcatcaaacaagactgccacatgtggagatcgagaacc
acggtaaacacttgggtatgtactgtcttttggggacaagaggatggtat
gct
gaattcatataactatggagggaagcctggggctgctgcagcccttgaga
caaaggatcaatcaatgtgagccgtgcccgatttgtcagctctctaaaac
tcaacagcctgtattaccatgggctctgtgtgcgccaggtactgtaaagg
agcttgggttcctcagagaagggaagaggcggacagacagagactgtggc
ctgccctagtggaggagtttccattctgtgcagattaaatgggctactga
agctgtccacactgttgccagagacatggagaagggaggggctctaaagg
gttagttttcactctatgactgttctaggagaggccgatgaatgagctgt
acaatgtgctgaggtcaggaaatgatgcaggagggagaatcaggagtgag
gagccctttccagtactaagcaggcagaggagcctccgtccctccccgag
aggtggtggccagcgcctcacagctaggtgcatggtgctggcactgctca
gcagcctgtgcctgctccccacaggaaatggtttcctgacctctttgaca
ccttgctcattgactttggatactctggcacctgccagttgccttcctgc
agggtgatttctggagctgagtttgtcagtgcctggcatcaagcaaagag
cctcaactgccatttccttctcaaggtgactgaggtccccgtacaatacc
ccagcctggttccagatcctgattctgactccctggggtcaggcacacag
ttataggctagccaggccccctcgtgagagccttgcctactgaagctgga
gactccccgagtcagcagttgaagctggcaggcacattggagcatagagg
tatgtgtggaggtattggcccctggtgctggtttagccttccgtatgcac
tctccctgagcccatctcattgcgttgtatttctctacttctctcaaaaa
gagttctgagttgagataaactaatggggataaaagcttaaatgtggact
ttacagaatactgggatgacgatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30948177_30949286
seq2: B6Ng01-121M15.b_47_1149

seq1  GAATTCCTCAGGGGAAGTGCTGTGGAGAGTGAGAAGCAGTGTGTTCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGGGAAGTGCTGTGGAGAGTGAGAAGCAGTGTGTTCAGGG  50

seq1  CCGGTGGCAGGCGGACAGTCTTCATGTGCATCTGTAGGCTGATGTAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGGCAGGCGGACAGTCTTCATGTGCATCTGTAGGCTGATGTAAAGG  100

seq1  GCAGTGTAGCCATCCTTATTAAAAAGATTCCTTCGGGAAACCCTGCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTAGCCATCCTTATTAAAAAGATTCCTTCGGGAAACCCTGCTGCA  150

seq1  TGCTGCGGCATGGGTGAATCTTTGAAGATGTTCTGTGGTGAAGAAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGGCATGGGTGAATCTTTGAAGATGTTCTGTGGTGAAGAAGCCAG  200

seq1  CGACAGAGGTGACTACAGTAAGATGCTACCATCCTGGGGGTTTCTAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGAGGTGACTACAGTAAGATGCTACCATCCTGGGGGTTTCTAAAGT  250

seq1  CATCAGGTTCATAGAAACAGGAAGTAGAGTTATAGTGGTGGTTGCCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTTCATAGAAACAGGAAGTAGAGTTATAGTGGTGGTTGCCAGGA  300

seq1  GATTCAGGGAGGAGGAAATAGGATGTTGCTCAGTGAGAATAGAGTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGGAGGAGGAAATAGGATGTTGCTCAGTGAGAATAGAGTTTCTA  350

seq1  TTTTGTTAGTTGGGGAAGCCACAGAGAGCGGGTGCACCATGTGAGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGTTGGGGAAGCCACAGAGAGCGGGTGCACCATGTGAGGAATG  400

seq1  TTCACACTTGCAGAGCTGTGAACTTAGAAATGACTAAGATGATACATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTTGCAGAGCTGTGAACTTAGAAATGACTAAGATGATACATTTT  450

seq1  TGCACTGTGTGGTAGTGTGTTCTATTTTGGTTTTGTTTGTTTGTTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTGTGGTAGTGTGTTCTATTTTGGTTTTGTTTGTTTGTTTTGTG  500

seq1  GGTTTTTTTAAAGACAGGATTTTTTAAAATTAATTTAATTTGCAAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTAAAGACAGGATTTTTTAAAATTAATTTAATTTGCAAAAATG  550

seq1  TTTCTTCTAAATTGAAGCATTCCCTCCCAGAGGGAGAAGGGCATCTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTAAATTGAAGCATTCCCTCCCAGAGGGAGAAGGGCATCTCACT  600

seq1  CTGGGCTCTGGAGACTTGGCAGTCAACACATTTTGCAAGCTCAGAGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTGGAGACTTGGCAGTCAACACATTTTGCAAGCTCAGAGAGCT  650

seq1  GAACCCCCCAGATTCACGTTATAGAGGGAGTGAAGAATCCCTGCCTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCCCAGATTCACGTTATAGAGGGAGTGAAGAATCCCTGCCTACCA  700

seq1  GAGACTCACTCAGCTGCCTGGAGGAGATTATCCCATCTTGTCTGCAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCACTCAGCTGCCTGGAGGAGATTATCCCATCTTGTCTGCAGGCT  750

seq1  GTGCAGAACCCATGGTTGCAGCTGTTGTGAAGTTCTCACCCAGGCAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAACCCATGGTTGCAGCTGTTGTGAAGTTCTCACCCAGGCAAGGG  800

seq1  TGGGCTTTGTAGAGATTCAAGTT-CCTTTGAGTTGTGTGTGCTCCTGGTA  849
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  TGGGCTTTGTAGAGATTCAAGTTCCCTTTGAGTTGTGTGTGCTCCTGGGA  850

seq1  AGTAGCTCTCACCCATACTCCTAAAAATAACCAATATACTCACCAAGCTA  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTAGCTCTCACCCATACTCCTAAAAATAACCAATATACTCA-CAAGCTA  899

seq1  GACTTGGGTTGAATTGTTTCTTTGGTCTCTCATTGGCTTCCTATTCAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GACTTGGGTTGAATTGTTTCTTTGGTCTCTCATTGGCTTCCTATTCA-GG  948

seq1  TGACTAGACATGTGTCTCTCAAGAGAAGTCCCATGCTACATTGAGTGGCT  999
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TGACTAGACATGTGTCTCTC-AGAGAAGTCCCATGCTACA-TGAGTGGCT  996

seq1  ACTCCAATTAAGGTCACAGGCATCAAACAAGACTGCCACATTGTGAGATC  1049
      ||||  ||| |||||||| ||||||||||||||||||||||   ||||||
seq2  ACTC--ATTTAGGTCACA-GCATCAAACAAGACTGCCACATGTGGAGATC  1043

seq1  GGAGACACACGGGAAACACTTTGGGATG-ACTGTCTTTTGGGGAACAAGA  1098
       ||||  ||||| |||||||| || ||| |||||||||||||| ||||||
seq2  -GAGAACCACGGTAAACACTTGGGTATGTACTGTCTTTTGGGG-ACAAGA  1091

seq1  GTAGGGTATGCT  1110
      | | ||||||||
seq2  GGATGGTATGCT  1103

seq1: chr16_31058478_31059527
seq2: B6Ng01-121M15.g_65_1090 (reverse)

seq1  CCCATCTGTCACTCCCAGGTATTCCTGTAAGAGTCCCAACATTTTAGCTT  50
      |||||| |||| ||||| ||||| |||||| |||||  |||||| |||||
seq2  CCCATC-GTCA-TCCCA-GTATT-CTGTAA-AGTCC--ACATTTAAGCTT  43

seq1  TTATCCCCATTTAGGTTTTATCCTCAAACTCAGAAACCTCTTTTTGAGAG  100
      ||||||||| ||||  ||||| ||| |||||||||  |||||||||||||
seq2  TTATCCCCA-TTAG--TTTAT-CTC-AACTCAGAA--CTCTTTTTGAGAG  86

seq1  AGGTAAGGAGAAATACAACGCAAATGAGATGGGCCTCAGGGAGAGTGCAT  150
      | |||  |||||||||||||| ||||||||||| ||||||||||||||||
seq2  AAGTA--GAGAAATACAACGC-AATGAGATGGG-CTCAGGGAGAGTGCAT  132

seq1  AACGGAAGGCTAAACCAGCACCAGGGGGCCCAATACCTCCAACACATACC  200
       ||||||||||||||||||||||||||  ||||||||||| |||||||||
seq2  -ACGGAAGGCTAAACCAGCACCAGGGG--CCAATACCTCC-ACACATACC  178

seq1  TCCTATGCTCCAATGTGCCTGCCAGCTTCAACTGCTGACTCGGGGAGTCT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTATGCTCCAATGTGCCTGCCAGCTTCAACTGCTGACTCGGGGAGTCT  227

seq1  CCAGCTTCAGTAGGCAAGGCTCTCACGAGGGGGCCTGGCTAGCCTATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCAGTAGGCAAGGCTCTCACGAGGGGGCCTGGCTAGCCTATAAC  277

seq1  TGTGTGCCCTGACCCCAGGGAGTCAGAATCAGGATCTGGAACCAGGCTGG  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTG-CCTGACCCCAGGGAGTCAGAATCAGGATCTGGAACCAGGCTGG  326

seq1  GGTATTGTACGGGGACCTCAGTCACCTTGAGAAGGAAATGGCAGTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGTACGGGGACCTCAGTCACCTTGAGAAGGAAATGGCAGTTGAGG  376

seq1  CTCTTTGCTTGATGCCAGGCACTGACAAACTCAGCTCCAGAAATCACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTTGATGCCAGGCACTGACAAACTCAGCTCCAGAAATCACCCT  426

seq1  GCAGGAAGGCAACTGGCAGGTGCCAGAGTATCCAAAGTCAATGAGCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGGCAACTGGCAGGTGCCAGAGTATCCAAAGTCAATGAGCAAGG  476

seq1  TGTCAAAGAGGTCAGGAAACCATTTCCTGTGGGGAGCAGGCACAGGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGAGGTCAGGAAACCATTTCCTGTGGGGAGCAGGCACAGGCTGC  526

seq1  TGAGCAGTGCCAGCACCATGCACCTAGCTGTGAGGCGCTGGCCACCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTGCCAGCACCATGCACCTAGCTGTGAGGCGCTGGCCACCACCT  576

seq1  CTCGGGGAGGGACGGAGGCTCCTCTGCCTGCTTAGTACTGGAAAGGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGAGGGACGGAGGCTCCTCTGCCTGCTTAGTACTGGAAAGGGCTC  626

seq1  CTCACTCCTGATTCTCCCTCCTGCATCATTTCCTGACCTCAGCACATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCTGATTCTCCCTCCTGCATCATTTCCTGACCTCAGCACATTGT  676

seq1  ACAGCTCATTCATCGGCCTCTCCTAGAACAGTCATAGAGTGAAAACTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCATTCATCGGCCTCTCCTAGAACAGTCATAGAGTGAAAACTAAC  726

seq1  CCTTTAGAGCCCCTCCCTTCTCCATGTCTCTGGCAACAGTGTGGACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGAGCCCCTCCCTTCTCCATGTCTCTGGCAACAGTGTGGACAGCT  776

seq1  TCAGTAGCCCATTTAATCTGCACAGAATGGAAACTCCTCCACTAGGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGCCCATTTAATCTGCACAGAATGGAAACTCCTCCACTAGGGCAG  826

seq1  GCCACAGTCTCTGTCTGTCCGCCTCTTCCCTTCTCTGAGGAACCCAAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTCTCTGTCTGTCCGCCTCTTCCCTTCTCTGAGGAACCCAAGCT  876

seq1  CCTTTACAGTACCTGGCGCACACAGAGCCCATGGTAATACAGGCTGTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAGTACCTGGCGCACACAGAGCCCATGGTAATACAGGCTGTTGA  926

seq1  GTTTTAGAGAGCTGACAAATCGGGCACGGCTCACATTGATTGATCCTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAGAGCTGACAAATCGGGCACGGCTCACATTGATTGATCCTTTG  976

seq1  TCTCAAGGGCTGCAGCAGCCCCAGGCTTCCCTCCATAGTTATATGAATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGCTGCAGCAGCCCCAGGCTTCCCTCCATAGTTATATGAATTC  1026