BAC Information

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BAC

Clone NameB6Ng01-121O20
Chromosome16 (Build37)
Map Location 73,759,048 - 73,786,174
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121O20.bB6Ng01-121O20.g
ACCDH925486DH925487
length1,133486
definitionDH925486|Mus musculus domesticus DNA, BAC clone: B6Ng01-121O20, 5' end.DH925487|Mus musculus domesticus DNA, BAC clone: B6Ng01-121O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,785,018 - 73,786,174)(73,759,048 - 73,759,539)
sequence
gaattctctttcacatcctatttgagatttgaagcaaatgattctggcat
ttgctagctctagaatactgtttagtagctaacttaccttaataaaactt
atttttgatacaggatattttacaatattaatgccatctgaaaattttaa
cttgatacgcaagagagatttgagacaaggaaaaaatggggcattctaga
aagttaaccaaggctgaatttattttttacgaaatgtctggtatatatat
gccagcatataaatttaaagatatttgtcattctccaaattagatagatg
atttatatatagataacattacaatagataatatgttatagtctgtatat
acttcgtgtgcgtttaaagacattgttcattgttcccattgtgtgtgtgt
gcatgtgcacatttaaaattatcttcgagcaattgtcccaatagttaata
tgtttggatctaggaaaggatacatacattgctatagatcatatgttatc
tattctttgcatcctccagtcctggcatgtctcaaagaaccaagtaattg
ctgtcctcatttcaaagtttgtctagttgttaccattcagattacagtgg
tggctgcttccccaatccatttgcttgttctttgtctgttttcccactcc
tcctagctgtgtaatcactcattctttctcatttatcacaggctttccca
gtcctcactacactatctccccaattttgtcatggtgcactggtacatta
caaatacaattaaacctcttacgatacagcagcttttggccaacggagcc
ctgcttcaaggttgaaagatttctgatattacctctgatatcagttcttt
cccatttatcggcaatgtccggactaatgcagcagtgttgcattaattaa
aggaagcatctagtaatactgctgtttttgctgggctgacacggaatcag
agctcatgcctgctcatgtttagaccatttatcacccatgtcatcccaaa
gcagcagctgtctgagccaagctcatttgcattcatcaccctagcttttt
tttctcatctcacctcacagtcttgtatagcagcttattttgattgcaat
tcaagaaaaagctagcttattagtacgctatgt
aaaataaacaaaaaaaagaccagtcaattttagacttgttaagtgtactt
tttattgatttcgttctcctctttcagcatgaatccaaagaacaaaaaca
ggtcctgtggcttttactctttcactccaaacgagaaaggaaagatggtt
cctagtgcagaaacataaaatagctgtttctgcacaaatgatcgccttcc
tcatagcttcataatttactcccagtccataaggtcctcagttcccgtga
ttgtaatgatggatgactccactttggtaccacaggcaaagatgctgcaa
tgtatcactctgcaggatatacaatagaacaaacgaagcagcagggctga
atggcaagcaggacttctgagggaattctttccgctggaagagtacatca
tcattccttagaattatgtaaaatgcagcttataaatattgctcccattg
tggatatgtgtgtgtgtgtttgtgtatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73785018_73786174
seq2: B6Ng01-121O20.b_50_1182 (reverse)

seq1  ACATAGCGTACTAAATTTAGCTAAGCTATTTCTTTGGAAATGTGCATTTA  50
      ||||||||||||||  | |||| |||| ||||||  |||   |||| | |
seq2  ACATAGCGTACTAA--TAAGCT-AGCTTTTTCTT--GAA--TTGCAATCA  43

seq1  AAAAATTAAAGCTGCTATACAAAGACTTGTGA-GTGAGATGGAGGAAAAA  99
      |||     |||||||||||| ||||| ||||| ||||||| |||  ||||
seq2  AAA----TAAGCTGCTATAC-AAGAC-TGTGAGGTGAGAT-GAG--AAAA  84

seq1  AAAAGCTAGGGTTGATGAAATGCAAATGAAGCTTGGCTCAGACAGCTGGC  149
      ||||||||||| ||||| |||||||||| |||||||||||||||||| ||
seq2  AAAAGCTAGGG-TGATG-AATGCAAATG-AGCTTGGCTCAGACAGCT-GC  130

seq1  TGCTTTGGGATGACATGGGTGATAAATGGTTCTTAAAACATGAGCAGGCA  199
      ||||||||||||||||||||||||||||| |||  |||||||||||||||
seq2  TGCTTTGGGATGACATGGGTGATAAATGG-TCT--AAACATGAGCAGGCA  177

seq1  TGAGCCTCCTGATTCCGTGTCAGCCCAGCAAAAACAGCAGTATTACTAGA  249
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGC--TCTGATTCCGTGTCAGCCCAGCAAAAACAGCAGTATTACTAGA  225

seq1  TGCTTCCTTTAATTAATGCAACACTGCTGCATTAGTCCGGACATTGCCGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTTAATTAATGCAACACTGCTGCATTAGTCCGGACATTGCCGA  275

seq1  TAAATGGGAAAGAACTGATATCAGAGGTAATATCAGAAATCTTTCAACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGAAAGAACTGATATCAGAGGTAATATCAGAAATCTTTCAACCT  325

seq1  TGAAGCAGGGCTCCGTTGGCCAAAAGCTGCTGTATCGTAAGAGGTTTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGGCTCCGTTGGCCAAAAGCTGCTGTATCGTAAGAGGTTTAAT  375

seq1  TGTATTTGTAATGTACCAGTGCACCATGACAAAATTGGGGAGATAGTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTAATGTACCAGTGCACCATGACAAAATTGGGGAGATAGTGTA  425

seq1  GTGAGGACTGGGAAAGCCTGTGATAAATGAGAAAGAATGAGTGATTACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACTGGGAAAGCCTGTGATAAATGAGAAAGAATGAGTGATTACAC  475

seq1  AGCTAGGAGGAGTGGGAAAACAGACAAAGAACAAGCAAATGGATTGGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGAGGAGTGGGAAAACAGACAAAGAACAAGCAAATGGATTGGGGA  525

seq1  AGCAGCCACCACTGTAATCTGAATGGTAACAACTAGACAAACTTTGAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCACCACTGTAATCTGAATGGTAACAACTAGACAAACTTTGAAAT  575

seq1  GAGGACAGCAATTACTTGGTTCTTTGAGACATGCCAGGACTGGAGGATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGCAATTACTTGGTTCTTTGAGACATGCCAGGACTGGAGGATGC  625

seq1  AAAGAATAGATAACATATGATCTATAGCAATGTATGTATCCTTTCCTAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGATAACATATGATCTATAGCAATGTATGTATCCTTTCCTAGA  675

seq1  TCCAAACATATTAACTATTGGGACAATTGCTCGAAGATAATTTTAAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACATATTAACTATTGGGACAATTGCTCGAAGATAATTTTAAATGT  725

seq1  GCACATGCACACACACACAATGGGAACAATGAACAATGTCTTTAAACGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCACACACACACAATGGGAACAATGAACAATGTCTTTAAACGCA  775

seq1  CACGAAGTATATACAGACTATAACATATTATCTATTGTAATGTTATCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAGTATATACAGACTATAACATATTATCTATTGTAATGTTATCTAT  825

seq1  ATATAAATCATCTATCTAATTTGGAGAATGACAAATATCTTTAAATTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATCATCTATCTAATTTGGAGAATGACAAATATCTTTAAATTTAT  875

seq1  ATGCTGGCATATATATACCAGACATTTCGTAAAAAATAAATTCAGCCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCATATATATACCAGACATTTCGTAAAAAATAAATTCAGCCTTG  925

seq1  GTTAACTTTCTAGAATGCCCCATTTTTTCCTTGTCTCAAATCTCTCTTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTTCTAGAATGCCCCATTTTTTCCTTGTCTCAAATCTCTCTTGC  975

seq1  GTATCAAGTTAAAATTTTCAGATGGCATTAATATTGTAAAATATCCTGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGTTAAAATTTTCAGATGGCATTAATATTGTAAAATATCCTGTA  1025

seq1  TCAAAAATAAGTTTTATTAAGGTAAGTTAGCTACTAAACAGTATTCTAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAAGTTTTATTAAGGTAAGTTAGCTACTAAACAGTATTCTAGA  1075

seq1  GCTAGCAAATGCCAGAATCATTTGCTTCAAATCTCAAATAGGATGTGAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAAATGCCAGAATCATTTGCTTCAAATCTCAAATAGGATGTGAAA  1125

seq1  GAGAATTC  1157
      ||||||||
seq2  GAGAATTC  1133

seq1: chr16_73759048_73759539
seq2: B6Ng01-121O20.g_68_559

seq1  GAATTCAAAATAAACAAAAAAAAGACCAGTCAATTTTAGACTTGTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATAAACAAAAAAAAGACCAGTCAATTTTAGACTTGTTAAGT  50

seq1  GTACTTTTTATTGATTTCGTTCTCCTCTTTCAGCATGAATCCAAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTTATTGATTTCGTTCTCCTCTTTCAGCATGAATCCAAAGAACA  100

seq1  AAAACAGGTCCTGTGGCTTTTACTCTTTCACTCCAAACGAGAAAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTCCTGTGGCTTTTACTCTTTCACTCCAAACGAGAAAGGAAAG  150

seq1  ATGGTTCCTAGTGCAGAAACATAAAATAGCTGTTTCTGCACAAATGATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCTAGTGCAGAAACATAAAATAGCTGTTTCTGCACAAATGATCG  200

seq1  CCTTCCTCATAGCTTCATAATTTACTCCCAGTCCATAAGGTCCTCAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCATAGCTTCATAATTTACTCCCAGTCCATAAGGTCCTCAGTTC  250

seq1  CCGTGATTGTAATGATGGATGACTCCACTTTGGTACCACAGGCAAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATTGTAATGATGGATGACTCCACTTTGGTACCACAGGCAAAGATG  300

seq1  CTGCAATGTATCACTCTGCAGGATATACAATAGAACAAACGAAGCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGTATCACTCTGCAGGATATACAATAGAACAAACGAAGCAGCAG  350

seq1  GGCTGAATGGCAAGCAGGACTTCTGAGGGAATTCTTTCCGCTGGAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATGGCAAGCAGGACTTCTGAGGGAATTCTTTCCGCTGGAAGAGT  400

seq1  ACATCATCATTCCTTAGAATTATGTAAAATGCAGCTTATAAATATTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCATTCCTTAGAATTATGTAAAATGCAGCTTATAAATATTGCTC  450

seq1  CCATTGTGGATATGTGTGTGTGTGTTTGTGTATGTGTGTGTG  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGGATATGTGTGTGTGTGTTTGTGTATGTGTGTGTG  492