BAC Information

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BAC

Clone NameB6Ng01-122M14
Chromosome16 (Build37)
Map Location 86,072,742 - 86,210,017
singlet/doubletdoublet
Overlap genenone
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
Downstream geneLOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122M14.bB6Ng01-122M14.g
ACCDH926122DH926123
length1,209571
definitionDH926122|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M14, 5' end.DH926123|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,072,742 - 86,073,976)(86,209,441 - 86,210,017)
sequence
gaattcttttccattcagtaaatataaatactattctgaattgtttggag
ataaagggatggtcatgcacttaggttggctgtagataggagtccagtta
agaaacaagctaacttagtcctcccagtacattgccttctttattgtttt
ctgtcacccatggcttggaggtgtctggccctgtcccaaaacaatttcaa
attccagcatccagaattttatgtgaaactcaccccagacaaagactgct
tgtatgttgttcaatgatcactttctttcacagtctggcacataaaagat
gtagacttttctccctccattcctgaataatggattttaaaaccatatta
gacatctccaacatagtataaacctagggagtatgtagtggaatatctca
gaaatgccctgccaataaagattttccttattaactctcactcctcccat
gagatacattggtagtaaaactaattcagcaagcactttttaacacttgc
cagatagcaagggctaacttgctccccaccagtgacaggttgatagctgt
attttggaaatgtttgtagaaatccaagggctcagctctccatgatttat
ttaacttacagttcattggcacaagacatgagggtgggggacttttcctt
cacttatcctgatgcttaatccattctgaaggaaaatagctgtaaagcac
aaataacaaggaatgcatatggagtctacaggaaagggatgtaaggctgg
aactgaaatgaacatcacctcaaaaatccaaggtggtactttataattac
gagaactcaagaatctgttccctgaaatggttggttcatagagtacatcg
ttatatttgcattttctgatttgtaaccagatatataggcttgtacatct
gggttaatctgtttatgctgttatatagtgcagcatgttcatgcttagag
agctccaatcacagagcacctccatagtacattggagattttccctaggt
atggagagagctgtttgtttgtgagtatactctggttcttagatgtccct
caaacaaattcactttggtgaaatttacacagctaatgtgagtagacaat
gcaaatacagtagtttgtcagatatctggaatacctactaccaactgttt
gaccagacaatcgtcagatgtacctgcttacacttcagattggctccaat
aataaatat
cttaataaaggaagtttattttcctctcccttgaagatatggtacacata
ctagtcagatgcaatactgtattggatttatgttgaagtcttaaaaaatt
tgttaggtatgcacattccaaaaactgtttcaaaggctttgtggaaacaa
ccagacaaagatgccaaacaactaagaaatcaggtagcaactgccctttt
gtcctgaatgtaacattctgtgccagcctgtagccagccaaagtccaagc
aggtggtccagccaaaatccacagagctgccaaagcaaagcacagctgca
ctggcataaggaattctacctgagcaggactcacatttaataataataat
aataataataataataataataataataataaaaataataataataataa
tttcaacttttctttaatcagtagcaatattgcatctacaaaataattct
gtaaaagaaaacatggtaaaaaaaatcccaagtcttagcttctttttact
attttggatctatatgctatagaaccattcatagttactattatatatat
atatatatatatgtgtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86072742_86073976
seq2: B6Ng01-122M14.b_51_1259

seq1  GAATTCTTTTCCATTCAGTAAATATAAATACTATTCTGAATTGTTTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCATTCAGTAAATATAAATACTATTCTGAATTGTTTGGAG  50

seq1  ATAAAGGGATGGTCATGCACTTAGGTTGGCTGTAGATAGGAGTCCAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGATGGTCATGCACTTAGGTTGGCTGTAGATAGGAGTCCAGTTA  100

seq1  AGAAACAAGCTAACTTAGTCCTCCCAGTACATTGCCTTCTTTATTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGCTAACTTAGTCCTCCCAGTACATTGCCTTCTTTATTGTTTT  150

seq1  CTGTCACCCATGGCTTGGAGGTGTCTGGCCCTGTCCCAAAACAATTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCCATGGCTTGGAGGTGTCTGGCCCTGTCCCAAAACAATTTCAA  200

seq1  ATTCCAGCATCCAGAATTTTATGTGAAACTCACCCCAGACAAAGACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGCATCCAGAATTTTATGTGAAACTCACCCCAGACAAAGACTGCT  250

seq1  TGTATGTTGTTCAATGATCACTTTCTTTCACAGTCTGGCACATAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTGTTCAATGATCACTTTCTTTCACAGTCTGGCACATAAAAGAT  300

seq1  GTAGACTTTTCTCCCTCCATTCCTGAATAATGGATTTTAAAACCATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTTTCTCCCTCCATTCCTGAATAATGGATTTTAAAACCATATTA  350

seq1  GACATCTCCAACATAGTATAAACCTAGGGAGTATGTAGTGGAATATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTCCAACATAGTATAAACCTAGGGAGTATGTAGTGGAATATCTCA  400

seq1  GAAATGCCCTGCCAATAAAGATTTTCCTTATTAACTCTCACTCCTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCCTGCCAATAAAGATTTTCCTTATTAACTCTCACTCCTCCCAT  450

seq1  GAGATACATTGGTAGTAAAACTAATTCAGCAAGCACTTTTTAACACTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACATTGGTAGTAAAACTAATTCAGCAAGCACTTTTTAACACTTGC  500

seq1  CAGATAGCAAGGGCTAACTTGCTCCCCACCAGTGACAGGTTGATAGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCAAGGGCTAACTTGCTCCCCACCAGTGACAGGTTGATAGCTGT  550

seq1  ATTTTGGAAATGTTTGTAGAAATCCAAGGGCTCAGCTCTCCATGATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAAATGTTTGTAGAAATCCAAGGGCTCAGCTCTCCATGATTTAT  600

seq1  TTAACTTACAGTTCATTGGCACAAGACATGAGGGTGGGGGACTTTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTACAGTTCATTGGCACAAGACATGAGGGTGGGGGACTTTTCCTT  650

seq1  CACTTATCCTGATGCTTAATCCATTCTGAAGGAAAATAGCTGTAAAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCCTGATGCTTAATCCATTCTGAAGGAAAATAGCTGTAAAGCAC  700

seq1  AAATAACAAGGAATGCATATGGAGTCTACAGGAAAGGGATGTAAGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAAGGAATGCATATGGAGTCTACAGGAAAGGGATGTAAGGCTGG  750

seq1  AACTGAAATGAACATCACCTCAAAAATCCAAGGTGGTACTTTATAATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAATGAACATCACCTCAAAAATCCAAGGTGGTACTTTATAATTAC  800

seq1  GAGAACTCAAGAATCTGTTCCCTGAAATGGTTGGTTCATAGAGTACATCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCAAGAATCTGTTCCCTGAAATGGTTGGTTCATAGAGTACATCG  850

seq1  TTATATTTGCATTTTCTGATTTGTAACCAGATATATAGGCTTGTACATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGCATTTTCTGATTTGTAACCAGATATATAGGCTTGTACATCT  900

seq1  -GGTTAATCTGTTTATGCTGTTATATAGTGCAGGCATGTTTCATGCTTAG  949
       ||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GGGTTAATCTGTTTATGCTGTTATATAGTGCA-GCATG-TTCATGCTTAG  948

seq1  AGAGCTCCAACCACAGAGCACCTCCATAGTACATTGGAGATTTTCCCTAG  999
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCAATCACAGAGCACCTCCATAGTACATTGGAGATTTTCCCTAG  998

seq1  GTATGGAGAAGAAGGCTTGTTTGTATGTGAGTATACTCT-GTTCTTAGAA  1048
      |||||||| |||  || ||||||| |||||||||||||| |||||||| |
seq2  GTATGGAG-AGA--GC-TGTTTGTTTGTGAGTATACTCTGGTTCTTAG-A  1043

seq1  TGTCCCTCAAAACATATTCACTTTGGTGATATTTACACAGCTAATGTGAA  1098
      |||||||| ||||| |||||||||||||| |||||||||||||||||| |
seq2  TGTCCCTC-AAACAAATTCACTTTGGTGAAATTTACACAGCTAATGTG-A  1091

seq1  GTTAGGACAAATGCAAATACAGGTAGTTTGTCAGTATTATCTGGATTAAC  1148
      ||   ||| |||||||||||| ||||||||||||   |||||||| || |
seq2  GT--AGAC-AATGCAAATACA-GTAGTTTGTCAG--ATATCTGGAATACC  1135

seq1  TCTAACTACCAACTGTTTTGACACCAAGACAATACAGACAAGTAGGAAAC  1198
      |   ||||||||||| |||||   | |||||||    | | ||     ||
seq2  T---ACTACCAACTG-TTTGA---CCAGACAATCGTCAGATGT-----AC  1173

seq1  TGGCATACATCTACAGTTTGGCTCAAATAATAAATAT  1235
        || |||| || ||| ||||||| ||||||||||||
seq2  CTGCTTACA-CTTCAGATTGGCTCCAATAATAAATAT  1209

seq1: chr16_86209441_86210017
seq2: B6Ng01-122M14.g_67_643 (reverse)

seq1  CACACACACATATATATATATATATATATAATAGTAACTATGAATGGTTC  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACATATATATATATATATATATAATAGTAACTATGAATGGTTC  50

seq1  TATAGCATATAGATCCAAAATAGTAAAAAGAAGCTAAGACTTGGGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATATAGATCCAAAATAGTAAAAAGAAGCTAAGACTTGGGATTTT  100

seq1  TTTTACCATGTTTTCTTTTACAGAATTATTTTGTAGATGCAATATTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATGTTTTCTTTTACAGAATTATTTTGTAGATGCAATATTGCTA  150

seq1  CTGATTAAAGAAAAGTTGAAATTATTATTATTATTATTTTTATTATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAAGAAAAGTTGAAATTATTATTATTATTATTTTTATTATTATT  200

seq1  ATTATTATTATTATTATTATTATTATTATTATTAAATGTGAGTCCTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTATTATTATTAAATGTGAGTCCTGCTC  250

seq1  AGGTAGAATTCCTTATGCCAGTGCAGCTGTGCTTTGCTTTGGCAGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAATTCCTTATGCCAGTGCAGCTGTGCTTTGCTTTGGCAGCTCTG  300

seq1  TGGATTTTGGCTGGACCACCTGCTTGGACTTTGGCTGGCTACAGGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTGGCTGGACCACCTGCTTGGACTTTGGCTGGCTACAGGCTGGC  350

seq1  ACAGAATGTTACATTCAGGACAAAAGGGCAGTTGCTACCTGATTTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTTACATTCAGGACAAAAGGGCAGTTGCTACCTGATTTCTTAG  400

seq1  TTGTTTGGCATCTTTGTCTGGTTGTTTCCACAAAGCCTTTGAAACAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGCATCTTTGTCTGGTTGTTTCCACAAAGCCTTTGAAACAGTTT  450

seq1  TTGGAATGTGCATACCTAACAAATTTTTTAAGACTTCAACATAAATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGTGCATACCTAACAAATTTTTTAAGACTTCAACATAAATCCAA  500

seq1  TACAGTATTGCATCTGACTAGTATGTGTACCATATCTTCAAGGGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATTGCATCTGACTAGTATGTGTACCATATCTTCAAGGGAGAGGA  550

seq1  AAATAAACTTCCTTTATTAAGGAATTC  577
      |||||||||||||||||||||||||||
seq2  AAATAAACTTCCTTTATTAAGGAATTC  577