BAC Information

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BAC

Clone NameB6Ng01-123L20
Chromosome16 (Build37)
Map Location 14,935,472 - 15,105,941
singlet/doubletdoublet
Overlap geneLOC100042737
Upstream geneMpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1
Downstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123L20.bB6Ng01-123L20.g
ACCDH926826DH926827
length1,134377
definitionDH926826|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L20, 5' end.DH926827|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,935,472 - 14,936,610)(15,105,559 - 15,105,941)
sequence
gaattctgcatggaaaccttgggagctacaacagggagtgctcaagacat
gcactaatcccctcaacatgtcactacatctgcattcatttgcctcctac
agaaaaggacaaccctctctggcccagtaatttgtggcttgctgtgtacc
taagactgtcatttagtccatcaggaaaattttcctccctctaatacaca
ttgccttttgtttattctgcctccatttttctcttcttaccccactctgc
cccaattagatgactcccaccactggcacatagtccacttcccaagggct
tgttaggtgaaggggcattgggatatggaagaaggatacagttcttcctc
ttccccctcattcaggaaatgcttgtcatctatcctccctctttgcagtg
ccaaagttcattggtggcatggatgagtaaacataagagccaatcaccag
tgaagcaggtatgatcttcttcaacagacttctgtggaaacatgaatgcc
taccagtgaaagttcaagaagactctaggctgctgccacaaaaatattcc
taatatgcacattactgttgatcaggaaagttagggacacctgtcccctc
attcatggtggaacttttattgctgagtgctgactgacagacaaatcaca
ggaacacatttagtgcatgctatcaaaagcaagcctcactaatgattcag
tgatatagaaactcagagaatgagaaccagtatgccctctgctattaccc
agtacctgcatgggagtggtataatgactactcacttcttagcatttccc
catctctcaataaactcacttgtagacagcaactggaggctgcccaacaa
taccctgttgtttatatagaaaatgtgcatgcttctaagctgcacatccc
tattcagctggctcatcacttttcaagatctgtccagtatagcaaacacc
agcccacacatgagattgatttgctgaatgatgtatgaaatcaggaaagg
acattgactgaagccaatggaatcatggcagaagtgttcttaccctgtcc
atggcatcaagaaacagcaaaagctgcttgcttttctttcctttggtggg
tggcacattagaaaaacatcaggtgcctgtaaga
tagtttgaaccccctgccccaaacccatcaagcctggcatcatagcttat
gaatcacagtgttcttctatgatattggaggcagagactggaaaattccc
aaccagctagcctgtacgaagctcaggagtgagtagcaagagatatattc
ccattcaaaggaagaaggcaaggaccaatacctgatattgtcctcagact
tccacacacatgccaatgcacatgtgtgccaatattcacacaaaccagta
tatgcatacatcacacagatacatacacacaaacacatcttaaagtacaa
ttaaaaaacgaaaagtaaaacagctcagaaatgacacacattagtgagga
tatggaaatggaatggtggtggtggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_14935472_14936610
seq2: B6Ng01-123L20.b_49_1182

seq1  GAATTCTGCATGGAAACCTTGGGAGCTACAACAGGGAGTGCTCAAGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGGAAACCTTGGGAGCTACAACAGGGAGTGCTCAAGACAT  50

seq1  GCACTAATCCCCTCAACATGTCACTACATCTGCATTCATTTGCCTCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAATCCCCTCAACATGTCACTACATCTGCATTCATTTGCCTCCTAC  100

seq1  AGAAAAGGACAACCCTCTCTGGCCCAGTAATTTGTGGCTTGCTGTGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGACAACCCTCTCTGGCCCAGTAATTTGTGGCTTGCTGTGTACC  150

seq1  TAAGACTGTCATTTAGTCCATCAGGAAAATTTTCCTCCCTCTAATACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGTCATTTAGTCCATCAGGAAAATTTTCCTCCCTCTAATACACA  200

seq1  TTGCCTTTTGTTTATTCTGCCTCCATTTTTCTCTTCTTACCCCACTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTTGTTTATTCTGCCTCCATTTTTCTCTTCTTACCCCACTCTGC  250

seq1  CCCAATTAGATGACTCCCACCACTGGCACATAGTCCACTTCCCAAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAGATGACTCCCACCACTGGCACATAGTCCACTTCCCAAGGGCT  300

seq1  TGTTAGGTGAAGGGGCATTGGGATATGGAAGAAGGATACAGTTCTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTGAAGGGGCATTGGGATATGGAAGAAGGATACAGTTCTTCCTC  350

seq1  TTCCCCCTCATTCAGGAAATGCTTGTCATCTATCCTCCCTCTTTGCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTCATTCAGGAAATGCTTGTCATCTATCCTCCCTCTTTGCAGTG  400

seq1  CCAAAGTTCATTGGTGGCATGGATGAGTAAACATAAGAGCCAATCACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTCATTGGTGGCATGGATGAGTAAACATAAGAGCCAATCACCAG  450

seq1  TGAAGCAGGTATGATCTTCTTCAACAGACTTCTGTGGAAACATGAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGTATGATCTTCTTCAACAGACTTCTGTGGAAACATGAATGCC  500

seq1  TACCAGTGAAAGTTCAAGAAGACTCTAGGCTGCTGCCACAAAAATATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTGAAAGTTCAAGAAGACTCTAGGCTGCTGCCACAAAAATATTCC  550

seq1  TAATATGCACATTACTGTTGATCAGGAAAGTTAGGGACACCTGTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCACATTACTGTTGATCAGGAAAGTTAGGGACACCTGTCCCCTC  600

seq1  ATTCATGGTGGAACTTTTATTGCTGAGTGCTGACTGACAGACAAATCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGTGGAACTTTTATTGCTGAGTGCTGACTGACAGACAAATCACA  650

seq1  GGAACACATTTAGTGCATGCTATCAAAAGCAAGCCTCACTAATGATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACATTTAGTGCATGCTATCAAAAGCAAGCCTCACTAATGATTCAG  700

seq1  TGATATAGAAACTCAGAGAATGAGAACCAGTATGCCCTCTGCTATTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGAAACTCAGAGAATGAGAACCAGTATGCCCTCTGCTATTACCC  750

seq1  AGTACCTGCATGGGAGTGGTATAATGACTACTCACTTCTTAGCATTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTGCATGGGAGTGGTATAATGACTACTCACTTCTTAGCATTTCCC  800

seq1  CATCTCTCAATAAACTCACTTGTAGACAGCAACTGGAGGCTGCCCAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCAATAAACTCACTTGTAGACAGCAACTGGAGGCTGCCCAACAA  850

seq1  TACCCTGTTGTTTATATAGAAAATGTGCATGCTTCTAAGCTGCACATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTTGTTTATATAGAAAATGTGCATGCTTCTAAGCTGCACATCCC  900

seq1  TATTCAGCTGGCTCATCACTTTTCAAGATCTGTCCAGTATAAGCAAACAC  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATTCAGCTGGCTCATCACTTTTCAAGATCTGTCCAGTAT-AGCAAACAC  949

seq1  CAGCCCACAACATGAGATTGATTTGCTGAATGATGTATGATAATCAGGAA  1000
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCCCAC-ACATGAGATTGATTTGCTGAATGATGTATGA-AATCAGGAA  997

seq1  AGGACATTGACTGAAGCCAATGGAATCATGGCAAGAAGTG-TCCTACCCT  1049
      |||||||||||||||||||||||||||||||| ||||||| || ||||||
seq2  AGGACATTGACTGAAGCCAATGGAATCATGGC-AGAAGTGTTCTTACCCT  1046

seq1  GTCCATGGCATCAAGAAACAGGCAAAAAGCTGC-TGCTTTTCTATTCCTT  1098
      |||||||||||||||||||||   ||||||||| ||||||||| ||||||
seq2  GTCCATGGCATCAAGAAACAG--CAAAAGCTGCTTGCTTTTCT-TTCCTT  1093

seq1  TTGTGGGT-GCACATTTAGAAAACATCAGGTGGCTGGTAAGA  1139
      | |||||| |||||||   ||||||||||||| || ||||||
seq2  TGGTGGGTGGCACATTAGAAAAACATCAGGTGCCT-GTAAGA  1134

seq1: chr16_15105559_15105941
seq2: B6Ng01-123L20.g_69_451 (reverse)

seq1  AACCACCACCACCATTCCATTTCCATATCCTCACTAATGTGTGTCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCACCACCATTCCATTTCCATATCCTCACTAATGTGTGTCATTTC  50

seq1  TGAGCTGTTTTACTTTTCGTTTTTTAATTGTACTTTAAGATGTGTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTTTTACTTTTCGTTTTTTAATTGTACTTTAAGATGTGTTTGTG  100

seq1  TGTATGTATCTGTGTGATGTATGCATATACTGGTTTGTGTGAATATTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATCTGTGTGATGTATGCATATACTGGTTTGTGTGAATATTGGC  150

seq1  ACACATGTGCATTGGCATGTGTGTGGAAGTCTGAGGACAATATCAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGCATTGGCATGTGTGTGGAAGTCTGAGGACAATATCAGGTAT  200

seq1  TGGTCCTTGCCTTCTTCCTTTGAATGGGAATATATCTCTTGCTACTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTGCCTTCTTCCTTTGAATGGGAATATATCTCTTGCTACTCACT  250

seq1  CCTGAGCTTCGTACAGGCTAGCTGGTTGGGAATTTTCCAGTCTCTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTTCGTACAGGCTAGCTGGTTGGGAATTTTCCAGTCTCTGCCTC  300

seq1  CAATATCATAGAAGAACACTGTGATTCATAAGCTATGATGCCAGGCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCATAGAAGAACACTGTGATTCATAAGCTATGATGCCAGGCTTGA  350

seq1  TGGGTTTGGGGCAGGGGGTTCAAACTAGAATTC  383
      |||||||||||||||||||||||||||||||||
seq2  TGGGTTTGGGGCAGGGGGTTCAAACTAGAATTC  383