BAC Information

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BAC

Clone NameB6Ng01-124O22
Chromosome16 (Build37)
Map Location 46,165,073 - 46,292,711
singlet/doubletdoublet
Overlap genenone
Upstream geneAtg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
Downstream genePvrl3, LOC628757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124O22.bB6Ng01-124O22.g
ACCDH927708DH927709
length1,0091,180
definitionDH927708|Mus musculus domesticus DNA, BAC clone: B6Ng01-124O22, 5' end.DH927709|Mus musculus domesticus DNA, BAC clone: B6Ng01-124O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,165,073 - 46,166,089)(46,291,535 - 46,292,711)
sequence
gaattccactgtaacacttggcccttgtttgagaaacttatggaactttt
aggaaatggagagtcaatgaaagaagttcctggggatggacttgaacgtg
ttatagcctggccctgttccctgttgtttttctgtcttcttgactcattt
tacaatgcaacagatcagcttcattcctttgctgccacgtcccacccaac
ccccgcaacaataaactgtacccccctcttaaactaaaatagtcaaaatt
aacccctgctttttcaggtttttttttttttatcagaagacacaaaacta
acacaggtatcttctctatagcccccaccctatttattgagacaggtttc
ttggctatgccagctgacccatgaagtccacagtctcctgtagttatggt
tacagacaaaagcccttcacccagcttttcatgggttctggagttctgaa
ctttggtcctcttatctttacataaagcactgactgagccgtcatccctc
cggctctagctcttcattccaaaatacattcttcgcacctttgccaagaa
ccaattggcagtagttgcctggttttatttgcagaatctactccactggc
tttgtgtccttctatgccagcatgaataaaaaatttaacactatgtacta
aagttatgaagctacaagaagaaaatatagaagaaacatttcaatacata
agcttaggcaataatatttttattgcttgtgctcgaaaaaggaacagaaa
caaagtcaagagtagaaaaatggtattgtattgtattgtatcaaaaagct
cctacacaccaagaaaacaatcaaccaaattggctgtcagaaaacacttg
tcaaaaaaaattgtctgacaagggattaatatccagaatgtatgaggaac
ttaaatttaaccaagaagtttaaaagaaacatgatcagaatagtcatcct
tatacaaatggcaaaaagaaaaaatgctagtcctgttagtcatcaaggaa
attcatcaa
gaattctatctgtggagtagtagaggctgaatagggacacagctcaaaag
attaagaacaaatccctggacttgtagaaagccaacattagagagcaggc
taattccttgcagacactacaagagggaagggagggatttcagcagcaac
aacctaagtccttggtgaatgctggaaagacttctaaaatattatatctt
gtagcatcatgaaagcagaaatgtaagtcttaattttgaaaagaaatgac
ttatgaggtgttcaaatgctttcctatatgtggtttcttctcttcaataa
tagttgactacttgaaagataaaacccaaagttgttcacaaaaacaagag
agtttccatttaaagatgttttggtaatcttccttagttctgaggtttgg
ggctttctgaaatcccttcatttcattttgcaatggattattaaagactc
cttctccaaataactgagttgaaaacaaaccataaaaactatttaaggtc
tggaggggtaacagagttaaatgagaatgcatttgtattcagtaaacgtg
cattaggttctagaatccttgagtccaggggaagtcctgttaggtgtgcc
attaagttttctttctccttcccacttccctattctgctgcattgatcac
aggccatattatgatcctttaaacatgataggtgaggtaaccataggcaa
gttgatcattagtgtcttccgcatctttcccttcttttgacagtgacata
aaaatgtataagatctccattcaaaaaattttatttgcattatcctttaa
aagaatctcaagcgatgaagttgttctaactgttgagttgatagctaatt
atgaacagggtaattataatttagccagcgtgaacgattgtttagaagag
gtgacctctgtgctcttggaaactgcagctcaggacccagccagctgctg
tggtgcatgaaaaaacatccttaggttcattaagatcaaaggagctagtc
acttggttcgcaggactgatttcgccacctgccgaaggatttacagcaat
ttaacaactctttaaaggcccctgcctgaattgtaaccctcaaaaagaat
tctctgggaccatcatttgaagtgacaaatccctggtccaaaattcgctg
ctggtacttttattgagctcgatgtgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46165073_46166089
seq2: B6Ng01-124O22.b_46_1054

seq1  GAATTCCACTGTAACACTTGGCCCTTGTTTGAGAAACTTATGGAACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTAACACTTGGCCCTTGTTTGAGAAACTTATGGAACTTTT  50

seq1  AGGAAATGGAGAGTCAATGAAAGAAGTTCCTGGGGATGGACTTGAACGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGAGAGTCAATGAAAGAAGTTCCTGGGGATGGACTTGAACGTG  100

seq1  TTATAGCCTGGCCCTGTTCCCTGTTGTTTTTCTGTCTTCTTGACTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCTGGCCCTGTTCCCTGTTGTTTTTCTGTCTTCTTGACTCATTT  150

seq1  TACAATGCAACAGATCAGCTTCATTCCTTTGCTGCCACGTCCCACCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGCAACAGATCAGCTTCATTCCTTTGCTGCCACGTCCCACCCAAC  200

seq1  CCCCGCAACAATAAACTGTACCCCCCTCTTAAACTAAAATAGTCAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCAACAATAAACTGTACCCCCCTCTTAAACTAAAATAGTCAAAATT  250

seq1  AACCCCTGCTTTTTCAGGTTTTTTTTTTTTTATCAGAAGACACAAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGCTTTTTCAGGTTTTTTTTTTTTTATCAGAAGACACAAAACTA  300

seq1  ACACAGGTATCTTCTCTATAGCCCCCACCCTATTTATTGAGACAGGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTATCTTCTCTATAGCCCCCACCCTATTTATTGAGACAGGTTTC  350

seq1  TTGGCTATGCCAGCTGACCCATGAAGTCCACAGTCTCCTGTAGTTATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATGCCAGCTGACCCATGAAGTCCACAGTCTCCTGTAGTTATGGT  400

seq1  TACAGACAAAAGCCCTTCACCCAGCTTTTCATGGGTTCTGGAGTTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAAAAGCCCTTCACCCAGCTTTTCATGGGTTCTGGAGTTCTGAA  450

seq1  CTTTGGTCCTCTTATCTTTACATAAAGCACTGACTGAGCCGTCATCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCCTCTTATCTTTACATAAAGCACTGACTGAGCCGTCATCCCTC  500

seq1  CGGCTCTAGCTCTTCATTCCAAAATACATTCTTCGCACCTTTGCCAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTAGCTCTTCATTCCAAAATACATTCTTCGCACCTTTGCCAAGAA  550

seq1  CCAATTGGCAGTAGTTGCCTGGTTTTATTTGCAGAATCTACTCCACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGGCAGTAGTTGCCTGGTTTTATTTGCAGAATCTACTCCACTGGC  600

seq1  TTTGTGTCCTTCTATGCCAGCATGAATAAAAAATTTAACACTATGTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCCTTCTATGCCAGCATGAATAAAAAATTTAACACTATGTACTA  650

seq1  AAGTTATGAAGCTACAAGAAGAAAATATAGAAGAAACATTTCAATACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGAAGCTACAAGAAGAAAATATAGAAGAAACATTTCAATACATA  700

seq1  AGCTTAGGCAATAATATTTTTATTGCTTGTGCTCGAAAAAGGAACAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGCAATAATATTTTTATTGCTTGTGCTCGAAAAAGGAACAGAAA  750

seq1  CAAAGTCAAGAGTAGAAAAATGGTATTGTATTGTATTGTATCAAAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAAGAGTAGAAAAATGGTATTGTATTGTATTGTATCAAAAAGCT  800

seq1  CCTACACACCAAGAAAACAATCAACCAAATTGGCTGTCAGAAAACACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACACCAAGAAAACAATCAACCAAATTGGCTGTCAGAAAACACTTG  850

seq1  TCAAAAAAAATTGTCTGACAAGGGATTAATATCCAGAATGTATGAGGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAATTGTCTGACAAGGGATTAATATCCAGAATGTATGAGGAAC  900

seq1  TTAAAATTTAACCAAGAAGTTTAAAAAGAAAACAATGATCAGAATAGTCA  950
      || ||||||||||||||||||| ||||||||   ||||||||||||||||
seq2  TT-AAATTTAACCAAGAAGTTT-AAAAGAAA--CATGATCAGAATAGTCA  946

seq1  TCCTTATACAAATGGCAAAAAGAAAAAAATGCTAGGTCCTGTTAGCCATC  1000
      |||||||||||||||||||||| ||||||||||| |||||||||| ||||
seq2  TCCTTATACAAATGGCAAAAAG-AAAAAATGCTA-GTCCTGTTAGTCATC  994

seq1  AGGGAAATTCCAATCAA  1017
      | ||||||||  |||||
seq2  AAGGAAATTC--ATCAA  1009

seq1: chr16_46291535_46292711
seq2: B6Ng01-124O22.g_68_1247 (reverse)

seq1  ATTTCCACATCGAGTTCAAT-AAAGATCAAGCAGCTGAATTTTGGGACAA  49
      |||| ||||||||| ||||| ||||  | |||||| ||||||| |||| |
seq2  ATTT-CACATCGAGCTCAATAAAAGTACCAGCAGC-GAATTTT-GGACCA  47

seq1  GGGA-TTGTATCATC-AATGATGTCTCCAGAGACATCTTATTTGGAGGTT  97
      |||| ||||  | || |||||||   |||||||  |||  ||| |||| |
seq2  GGGATTTGTCACTTCAAATGATGGTCCCAGAGAATTCT--TTTTGAGGGT  95

seq1  AACAATTCAAGCAGAGGACCTTTAAA-AGTTGTT-AATTGCTGTAAATCC  145
       |||||||| |||| || |||||||| ||||||| |||||||||||||||
seq2  TACAATTCAGGCAG-GGGCCTTTAAAGAGTTGTTAAATTGCTGTAAATCC  144

seq1  TTCTGCAGCT-GCGAAATCAGTCCTGCGAA-CAAGTGACTAGCTCCTTTG  193
      ||| |||| | ||||||||||||||||||| |||||||||||||||||||
seq2  TTCGGCAGGTGGCGAAATCAGTCCTGCGAACCAAGTGACTAGCTCCTTTG  194

seq1  ATCTTAATGAA-CTAA-GATG-TTTTTCATGCACCACAGCAGCTGGCTGG  240
      ||||||||||| |||| |||| ||||||||||||||||||||||||||||
seq2  ATCTTAATGAACCTAAGGATGTTTTTTCATGCACCACAGCAGCTGGCTGG  244

seq1  GTCCTGAGCTGCAGTTTCCAAGAGCACAGAGGTCACCTCCTTCTAAACAA  290
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCCTGAGCTGCAGTTTCCAAGAGCACAGAGGTCACCT-CTTCTAAACAA  293

seq1  TCGTTCACGCTGGCTAAATTATAATTACCCTGTTCATAATTAGCTATCAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCACGCTGGCTAAATTATAATTACCCTGTTCATAATTAGCTATCAA  343

seq1  CTCAACAGTTAGAACAACTTCATCGCTTGAGATTCTTTTAAAGGATAATG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGTTAGAACAACTTCATCGCTTGAGATTCTTTTAAAGGATAATG  393

seq1  CAAATAAAATTTTTTGAATGGAGATCTTATACATTTTTATGTCACTGTCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAATTTTTTGAATGGAGATCTTATACATTTTTATGTCACTGTCA  443

seq1  AAAGAAGGGAAAGATGCGGAAGACACTAATGATCAACTTGCCTATGGTTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGAAAGATGCGGAAGACACTAATGATCAACTTGCCTATGGTTA  493

seq1  CCTCACCTATCATGTTTAAAGGATCATAATATGGCCTGTGATCAATGCAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTATCATGTTTAAAGGATCATAATATGGCCTGTGATCAATGCAG  543

seq1  CAGAATAGGGAAGTGGGAAGGAGAAAGAAAACTTAATGGCACACCTAACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGGGAAGTGGGAAGGAGAAAGAAAACTTAATGGCACACCTAACA  593

seq1  GGACTTCCCCTGGACTCAAGGATTCTAGAACCTAATGCACGTTTACTGAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCCCTGGACTCAAGGATTCTAGAACCTAATGCACGTTTACTGAA  643

seq1  TACAAATGCATTCTCATTTAACTCTGTTACCCCTCCAGACCTTAAATAGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGCATTCTCATTTAACTCTGTTACCCCTCCAGACCTTAAATAGT  693

seq1  TTTTATGGTTTGTTTTCAACTCAGTTATTTGGAGAAGGAGTCTTTAATAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTTTGTTTTCAACTCAGTTATTTGGAGAAGGAGTCTTTAATAA  743

seq1  TCCATTGCAAAATGAAATGAAGGGATTTCAGAAAGCCCCAAACCTCAGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCAAAATGAAATGAAGGGATTTCAGAAAGCCCCAAACCTCAGAA  793

seq1  CTAAGGAAGATTACCAAAACATCTTTAAATGGAAACTCTCTTGTTTTTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAGATTACCAAAACATCTTTAAATGGAAACTCTCTTGTTTTTGT  843

seq1  GAACAACTTTGGGTTTTATCTTTCAAGTAGTCAACTATTATTGAAGAGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTTTGGGTTTTATCTTTCAAGTAGTCAACTATTATTGAAGAGAA  893

seq1  GAAACCACATATAGGAAAGCATTTGAACACCTCATAAGTCATTTCTTTTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACATATAGGAAAGCATTTGAACACCTCATAAGTCATTTCTTTTC  943

seq1  AAAATTAAGACTTACATTTCTGCTTTCATGATGCTACAAGATATAATATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGACTTACATTTCTGCTTTCATGATGCTACAAGATATAATATT  993

seq1  TTAGAAGTCTTTCCAGCATTCACCAAGGACTTAGGTTGTTGCTGCTGAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTCTTTCCAGCATTCACCAAGGACTTAGGTTGTTGCTGCTGAAA  1043

seq1  TCCCTCCCTTCCCTCTTGTAGTGTCTGCAAGGAATTAGCCTGCTCTCTAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTTCCCTCTTGTAGTGTCTGCAAGGAATTAGCCTGCTCTCTAA  1093

seq1  TGTTGGCTTTCTACAAGTCCAGGGATTTGTTCTTAATCTTTTGAGCTGTG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTTTCTACAAGTCCAGGGATTTGTTCTTAATCTTTTGAGCTGTG  1143

seq1  TCCCTATTCAGCCTCTACTACTCCACAGATAGAATTC  1177
      |||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTCAGCCTCTACTACTCCACAGATAGAATTC  1180