BAC Information

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BAC

Clone NameB6Ng01-125J14
Chromosome16 (Build37)17 (Build37)
Map Location 6,089,754 - 6,090,87630,767,838 - 30,768,437
singlet/doubletsingletsinglet
Overlap geneA2bp1
Upstream genePpl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125J14.bB6Ng01-125J14.g
ACCDH928189DH928190
length1,119411
definitionDH928189|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J14, 5' end.DH928190|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,089,754 - 6,090,876)(30,767,838 - 30,768,437)
sequence
gaattcaaaatacatggtgacctccagctctgcatggcttcttaggatct
gaactcagctgctcatgtttgtctgtcaagtgttgagctgatctacagct
cacggtgcccatttcatgaaaacagagcatacttgaaagatggactgctg
gagcattgcttgcctgactctgtccacctgggttgtagacttagaaatat
ataaaaagaaacataccgttgagctcatgggtcatcatgttacaaatcta
accatggtagttaatacgactgtcaaaaataataagactatcgctaagaa
tagagaccaaaaatagcttgaaaaaaatcagacagtattgctgtgcttcc
ctttgaaagataattgtccttctaagtggtgtctggcagcactgtccagc
tttcagatggcaaaatccacaattccaactcccgaagtgagcagcccgag
aaccacagcccttctgaagattcagagttgaatggactcctgactgcagg
gtggccattacattaagtaatttaatgaacacggatacaggaagaaataa
atcaaatggaaacaatcaacagcaatcaagggagctgatcgtttgaggca
cttaaaatgtattaaatgagtgtttcaatcacagtgggcccttcctcaca
aactctcttaatcagcccgcacccttctcagcaaagtggcctgctcatgt
aaacagagagatctgagcagagccccacaacccatccccagcaacagtag
ctgagcagaaatcccaggattctcacagataaggtaaacaacagcagagg
ggagagaggtgagagaatgtgtgttcttacaaacaaatagcattttgcat
atatttacaaatacataagaatgtcctggggattgaacttggaggttttg
caggcatggcagaaagccccttagccattgggccaactcacaggtctgca
ttcatttgtattgcctacctattatcaataatgcagacatacttatgtgg
cactttgatttgtctgaatggggaaggataaatttcgtggcacatgtgac
acacatggaccaccacaacaacgcacatgcacatgtgcacacacactatg
caacaagttatgctccact
atttctccctttagccttttagctccaaagtggctatttcatctttggaa
actttagaagtggaattcagtgactggttctgttttgttatgattgttgt
tgtccttttagaaagtaaacacaggagctggagagatgactcagtggtta
agagagattactactcttgcagagaacctcagttttgttcccagcaccca
cgttgagtggcccataaccactcagaactgcaggtctagatctgacagcc
tcttctggtctccatgggcacctgcatacaagagatgtgctcttcctctc
tctctctctctctctctctctctctctctctctctctctctctcacacac
acacacacacacacacacacacacacacacacagaattaaaaggaatcat
tacaagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6089754_6090876
seq2: B6Ng01-125J14.b_50_1168

seq1  GAATTCAAAATACATGGTGACCTCCAGCTCTGCATGGCTTCTTAGGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATACATGGTGACCTCCAGCTCTGCATGGCTTCTTAGGATCT  50

seq1  GAACTCAGCTGCTCATGTTTGTCTGTCAAGTGTTGAGCTGATCTACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGCTGCTCATGTTTGTCTGTCAAGTGTTGAGCTGATCTACAGCT  100

seq1  CACGGTGCCCATTTCATGAAAACAGAGCATACTTGAAAGATGGACTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGCCCATTTCATGAAAACAGAGCATACTTGAAAGATGGACTGCTG  150

seq1  GAGCATTGCTTGCCTGACTCTGTCCACCTGGGTTGTAGACTTAGAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTGCTTGCCTGACTCTGTCCACCTGGGTTGTAGACTTAGAAATAT  200

seq1  ATAAAAAGAAACATACCGTTGAGCTCATGGGTCATCATGTTACAAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAAACATACCGTTGAGCTCATGGGTCATCATGTTACAAATCTA  250

seq1  ACCATGGTAGTTAATACGACTGTCAAAAATAATAAGACTATCGCTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTAGTTAATACGACTGTCAAAAATAATAAGACTATCGCTAAGAA  300

seq1  TAGAGACCAAAAATAGCTTGAAAAAAATCAGACAGTATTGCTGTGCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCAAAAATAGCTTGAAAAAAATCAGACAGTATTGCTGTGCTTCC  350

seq1  CTTTGAAAGATAATTGTCCTTCTAAGTGGTGTCTGGCAGCACTGTCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGATAATTGTCCTTCTAAGTGGTGTCTGGCAGCACTGTCCAGC  400

seq1  TTTCAGATGGCAAAATCCACAATTCCAACTCCCGAAGTGAGCAGCCCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGGCAAAATCCACAATTCCAACTCCCGAAGTGAGCAGCCCGAG  450

seq1  AACCACAGCCCTTCTGAAGATTCAGAGTTGAATGGACTCCTGACTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGCCCTTCTGAAGATTCAGAGTTGAATGGACTCCTGACTGCAGG  500

seq1  GTGGCCATTACATTAAGTAATTTAATGAACACGGATACAGGAAGAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATTACATTAAGTAATTTAATGAACACGGATACAGGAAGAAATAA  550

seq1  ATCAAATGGAAACAATCAACAGCAATCAAGGGAGCTGATCGTTTGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGGAAACAATCAACAGCAATCAAGGGAGCTGATCGTTTGAGGCA  600

seq1  CTTAAAATGTATTAAATGAGTGTTTCAATCACAGTGGGCCCTTCCTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGTATTAAATGAGTGTTTCAATCACAGTGGGCCCTTCCTCACA  650

seq1  AACTCTCTTAATCAGCCCGCACCCTTCTCAGCAAAGTGGCCTGCTCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTTAATCAGCCCGCACCCTTCTCAGCAAAGTGGCCTGCTCATGT  700

seq1  AAACAGAGAGATCTGAGCAGAGCCCCACAACCCATCCCCAGCAACAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAGATCTGAGCAGAGCCCCACAACCCATCCCCAGCAACAGTAG  750

seq1  CTGAGCAGAAATCCCAGGATTCTCACAGATAAGGTAAACAACAGCAGA-G  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGAGCAGAAATCCCAGGATTCTCACAGATAAGGTAAACAACAGCAGAGG  800

seq1  GGAGAGAGGTGAGAGAATGTGTGTTCTTACAAACAAATAGCATTTTGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGGTGAGAGAATGTGTGTTCTTACAAACAAATAGCATTTTGCAT  850

seq1  ATATTTACAAATACATAAGAATGTCCTGGGGATTGAACTTGGAGGTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACAAATACATAAGAATGTCCTGGGGATTGAACTTGGAGGTTTTG  900

seq1  CAGGCATGGCAGAAAGCCCCTTAGCCATTGGGCCAACTCACAGGTCTGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGGCAGAAAGCCCCTTAGCCATTGGGCCAACTCACAGGTCTGCA  950

seq1  TTCATTTGTATTGCCTACCTATTATCAATAATGCAGACATACTTATGTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTATTGCCTACCTATTATCAATAATGCAGACATACTTATGTGG  1000

seq1  CACTTTGATTTTGTCTGAATGGGGAAGGAT-AATTTCGTGGGCACATGTG  1048
      |||||||| ||||||||||||||||||||| |||||||| ||||||||||
seq2  CACTTTGA-TTTGTCTGAATGGGGAAGGATAAATTTCGT-GGCACATGTG  1048

seq1  CACACACATGGACACACACACACACGCACATGCACATGTGCACACACACT  1098
       ||||||||||||   ||||   |||||||||||||||||||||||||||
seq2  -ACACACATGGACCACCACAACAACGCACATGCACATGTGCACACACACT  1097

seq1  AATGCACACAAGTTTATGCTTCACT  1123
       ||||| ||||| ||||||| ||||
seq2  -ATGCA-ACAAG-TTATGCTCCACT  1119

seq1: chr17_30767838_30768437
seq2: B6Ng01-125J14.g_201_483 (reverse)

seq1  TTTTTCTTTCCCTTTTAATTACTAAAAGTTTCAGGACAGTTTTGGGAAGA  50
      |||||      ||| ||||        | |||       ||||      |
seq2  TTTTT------CTTGTAAT--------GATTC------CTTTT------A  24

seq1  TTTATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAG  100
       || | | ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAG  74

seq1  AGAGAGAGAGAGTCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAG  150
      |||||||||                    |||||||||||||||||||||
seq2  AGAGAGAGA--------------------GAGAGAGAGAGAGAGAGAGAG  104

seq1  AGAAAGGGAGGGAGGGAGAGAGAGGGAGGAAGAAGGAGAGGGGGAGAGAG  200
      |||                                               
seq2  AGA-----------------------------------------------  107

seq1  AGGGGGGAGGGGGGAGGGGAGAGGGGGGAGGGGGAAGGAGAGGGAGGGGG  250
                                                        
seq2  --------------------------------------------------  107

seq1  AGAGGGAGGGGGAGGGAGGGGGAGAGGGAGGGAGGGGGAGAGGGAGGGAG  300
                                                        
seq2  --------------------------------------------------  107

seq1  GGGGAGAGGGAGAAAGGGAGGGAGGGGGAGAGGGAGGGAGAGGGAGAAAG  350
                                                        
seq2  --------------------------------------------------  107

seq1  GGAGGGAAGGGGAGAGGGAGGGAGGGGGAGAGAGAGGGAGGGAAGGGGAG  400
                                                        
seq2  --------------------------------------------------  107

seq1  GGAGAGGGAGGAAGAGGGAGACAGGGGGAGAGAGAGAGAAAGAGAGAGAC  450
       ||||| |||||||||    |||                          |
seq2  -GAGAGAGAGGAAGAG---CACA-------------------------TC  128

seq1  TCTT-----TAGGTGCTTGTGGAGTCCAGAAGGCAACTCTG---GATCCC  492
      ||||      ||||||   ||||| |||||||   |  |||   |||  |
seq2  TCTTGTATGCAGGTGCCCATGGAGACCAGAAG---AGGCTGTCAGAT--C  173

seq1  TTGCAACCAG-AGTTACAAGTAGTTGTGAGCCA--CCATGTGCATGCTGA  539
      | |  ||| | ||||   ||| ||| || ||||  | | |||  ||||| 
seq2  TAG--ACCTGCAGTTCTGAGTGGTTATGGGCCACTCAACGTGGGTGCTGG  221

seq1  GAGTTAACCTCA-ATTCTCTGTAAGCACAGTCAATGCTCTTAACCAAGAA  588
      ||   || || |  ||||||| |||   ||| |   ||||||||||   |
seq2  GAACAAAACTGAGGTTCTCTGCAAGAGTAGTAATCTCTCTTAACCACTGA  271

seq1  CCCATCTCTCCA  600
        ||||||||||
seq2  GTCATCTCTCCA  283