BAC Information

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BAC

Clone NameB6Ng01-125P01
Chromosome16 (Build37)
Map Location 10,717,411 - 10,840,608
singlet/doubletdoublet
Overlap gene4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi
Downstream geneLitaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P01.bB6Ng01-125P01.g
ACCDH928436DH928437
length835361
definitionDH928436|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P01, 5' end.DH928437|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,717,411 - 10,718,242)(10,840,242 - 10,840,608)
sequence
gaattctgtgaatcaattcctaggacaggattcggggatggacaaattga
gcccctaggcagggcagacaccaacctcaaatgcagcgctgcagtgatag
ctgggtcaaactcttgaatagataaaaagcccaagaacaaggaatactgc
tcactagcccaccctgccaagccaggtcccggagggccttggtcccctgc
aaaggaaaggtgccccctttttctatagatagatgttaagtttctgttct
cacagttgcatcttcaagaagagtggtccaaatgattcctggatgtcccc
gatggctggcctgggtccctgacatctgtcatctccttctcagctgtcta
gccaaaggcaaataactagtgtctccaagctcctttctttcaaacaaaac
acttgttttcatgtgacatcctgacatggctttcacttggacagggctgg
tgatctatcctgtcaccataacacttctgaggccatgctggtctggtgat
ggcagcatcttccccatggcctccctctgccactgctccttgtggggaag
gggagaatgtccagcctgtcaatatttgaaccactgatcacctgtgtttg
ggtactgaggttaggagacaattccaagaatctaaacctctaaaaatatg
ggaatgagccgggcatagtggcgcacgcctttaatcccagcactcgggag
gcagaggcaggcggatttctgagttcgaggccagcctggtctacagagtg
agttccaggacagccagagctacacagaaaaaatcctgtctcaaaaaaag
gggggggggtgactgggaaaggattcctagtgaaa
ccaccattctcaacagctggcctcagcttcagtatgagcacaatgcatat
gagagcaagctgtcagcaaggggctggtacctgtccctacaagttggcaa
tagctggtgatgggaggcaggccactatgccattctgtcctcacatctgt
aattttaatccattggcaacaaactgaaattcagaggtatggtcaaggag
aaagtgttatcattcgaagaaccaggaaatgacaacatgagctttccacg
agcttcagcaagagaaaggcacactttcgcgcgcgcgcacgcgcacacac
acacacacacacacacacacacacacacacacacacacgtaagtgacggg
ggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10717411_10718242
seq2: B6Ng01-125P01.b_49_883

seq1  GAATTCTGTGAATCAATTCCTAGGACAGGATTCGGGGATGGACAAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAATCAATTCCTAGGACAGGATTCGGGGATGGACAAATTGA  50

seq1  GCCCCTAGGCAGGGCAGACACCAACCTCAAATGCAGCGCTGCAGTGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAGGCAGGGCAGACACCAACCTCAAATGCAGCGCTGCAGTGATAG  100

seq1  CTGGGTCAAACTCTTGAATAGATAAAAAGCCCAAGAACAAGGAATACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCAAACTCTTGAATAGATAAAAAGCCCAAGAACAAGGAATACTGC  150

seq1  TCACTAGCCCACCCTGCCAAGCCAGGTCCCGGAGGGCCTTGGTCCCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCCCACCCTGCCAAGCCAGGTCCCGGAGGGCCTTGGTCCCCTGC  200

seq1  AAAGGAAAGGTGCCCCCTTTTTCTATAGATAGATGTTAAGTTTCTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGGTGCCCCCTTTTTCTATAGATAGATGTTAAGTTTCTGTTCT  250

seq1  CACAGTTGCATCTTCAAGAAGAGTGGTCCAAATGATTCCTGGATGTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGCATCTTCAAGAAGAGTGGTCCAAATGATTCCTGGATGTCCCC  300

seq1  GATGGCTGGCCTGGGTCCCTGACATCTGTCATCTCCTTCTCAGCTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGGCCTGGGTCCCTGACATCTGTCATCTCCTTCTCAGCTGTCTA  350

seq1  GCCAAAGGCAAATAACTAGTGTCTCCAAGCTCCTTTCTTTCAAACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGCAAATAACTAGTGTCTCCAAGCTCCTTTCTTTCAAACAAAAC  400

seq1  ACTTGTTTTCATGTGACATCCTGACATGGCTTTCACTTGGACAGGGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTTCATGTGACATCCTGACATGGCTTTCACTTGGACAGGGCTGG  450

seq1  TGATCTATCCTGTCACCATAACACTTCTGAGGCCATGCTGGTCTGGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATCCTGTCACCATAACACTTCTGAGGCCATGCTGGTCTGGTGAT  500

seq1  GGCAGCATCTTCCCCATGGCCTCCCTCTGCCACTGCTCCTTGTGGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATCTTCCCCATGGCCTCCCTCTGCCACTGCTCCTTGTGGGGAAG  550

seq1  GGGAGAATGTCCAGCCTGTCAATATTTGAACCACTGATCACCTGTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATGTCCAGCCTGTCAATATTTGAACCACTGATCACCTGTGTTTG  600

seq1  GGTACTGAGGTTAGGAGACAATTCCAAGAATCTAAACCTCTAAAAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGAGGTTAGGAGACAATTCCAAGAATCTAAACCTCTAAAAATATG  650

seq1  GGAATGAGCCGGGCATAGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGCCGGGCATAGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  700

seq1  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  750

seq1  AGTTCCAGGACAGCCAGAGCTACACAG-AAAAACCCTGTCTCAAAAAAA-  798
      ||||||||||||||||||||||||||| ||||| ||||||||||||||| 
seq2  AGTTCCAGGACAGCCAGAGCTACACAGAAAAAATCCTGTCTCAAAAAAAG  800

seq1  GGGGGGGGGTGACT-GGAAAGGATTTCTAGTGAAA  832
      |||||||||||||| |||||||||| |||||||||
seq2  GGGGGGGGGTGACTGGGAAAGGATTCCTAGTGAAA  835

seq1: chr16_10840242_10840608
seq2: B6Ng01-125P01.g_69_435 (reverse)

seq1  CCCCCCCCCCCCCCGTCACTTACGTGTGTGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCGTCACTTACGTGTGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGCGCGTGCGCGCGCGCGAAAGTGTGCCTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGCGCGTGCGCGCGCGCGAAAGTGTGCCTTTCTC  100

seq1  TTGCTGAAGCTCGTGGAAAGCTCATGTTGTCATTTCCTGGTTCTTCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAGCTCGTGGAAAGCTCATGTTGTCATTTCCTGGTTCTTCGAAT  150

seq1  GATAACACTTTCTCCTTGACCATACCTCTGAATTTCAGTTTGTTGCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACTTTCTCCTTGACCATACCTCTGAATTTCAGTTTGTTGCCAAT  200

seq1  GGATTAAAATTACAGATGTGAGGACAGAATGGCATAGTGGCCTGCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAATTACAGATGTGAGGACAGAATGGCATAGTGGCCTGCCTCCC  250

seq1  ATCACCAGCTATTGCCAACTTGTAGGGACAGGTACCAGCCCCTTGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGCTATTGCCAACTTGTAGGGACAGGTACCAGCCCCTTGCTGAC  300

seq1  AGCTTGCTCTCATATGCATTGTGCTCATACTGAAGCTGAGGCCAGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTCTCATATGCATTGTGCTCATACTGAAGCTGAGGCCAGCTGTT  350

seq1  GAGAATGGTGGGAATTC  367
      |||||||||||||||||
seq2  GAGAATGGTGGGAATTC  367