BAC Information

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BAC

Clone NameB6Ng01-126B07
Chromosome16 (Build37)
Map Location 38,033,996 - 38,223,061
singlet/doubletdoublet
Overlap geneLOC100043713, Gsk3b
Upstream genePolq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271
Downstream geneNr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B07.bB6Ng01-126B07.g
ACCDH928543DH928544
length1,026447
definitionDH928543|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B07, 5' end.DH928544|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,222,044 - 38,223,061)(38,033,996 - 38,034,447)
sequence
gaattccatttatataaaatatcccaaatgggtaaatctatggagacaaa
aaacaaattgaagccgggcagcagtagtgcacgcctttaatcccagcact
tgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac
agagtgagttccaggacagccagggctacacagagaaaccctgtctcgaa
aaaccaaaaccaaccaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaccaaaaaaccccaaaaatcaaattgactgcttctagggg
cgaaaagactaaggggaaattcatgcttaatgaggcatgattttaggagt
aaagaaaatgttttggaagtttataaaggttttagcgcatagcaccagga
ctatacaaatgacactacacagtttaccttttaaaaaagttatcctacat
aaatttcatgtcatttttttaaggaaaaaaaaaccctcaggcatctactg
aactggtaactttaaaattttacttcattagtaacactaaaagattttca
ccaatgagtaatcaaatgaattacttcaaaacagcatatgagaacagtga
aacgtaaccctgaatcctgaaatctaatcaaataaaaagtttaaatggta
tttcacttcacacattcaaatgcacgtgcaagcgcacgcgcgcgcacaca
cacacacacacagagtgaagaagatatgctaaatgctaataacttctcct
ttgttaattaaactaagatagaggcacatcaacattgtagcttagccttt
tgtcaaaccgcagccaccgtcagtaacacctacactacacatttcccacg
gacactgccaggcacagggccgatacacaagaaaacatcttgttcctaag
ttaactggactctgacccatcagtaagttatcattctatctgtgcagctg
ctctaatttttactatccttttcaacttttaatcaggactatgctacctc
tcttatatgatacacttggtggtgag
cctcatgcagactaggctgcccttggcttgatctccaactcagagttcca
accgtttccacctcctaagtgctgggatttaaagggtgagtcaccatcac
ccacaacccacccactcccccctcagttttagttagttttctttttcaag
accgtttctgtaggcaaccctggctgtcctagtactcatgtagcccaggc
tggcctcgaactctgagattcatctgcctctgcctcctgagtgctgggat
taaaggtgtgtgccaccaatacccagtttatttttatctttgaatgtatg
tgtatatacatatgtctgtgcactgtgtgctgtgtatacaggtgcccata
gaggccagagagagtatcagatctgaagctgcagttactggcagttgtaa
gctgtcccacatgggtgctgggaaccaatttttgggtcttctagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38222044_38223061
seq2: B6Ng01-126B07.b_63_1073 (reverse)

seq1  CTCACCACCATAGTGTATCATATAAAGAGAGTAAGCATTAGTCCTGATTA  50
      |||||||||| |||||||||||| |||||||  |||| ||||||||||||
seq2  CTCACCACCA-AGTGTATCATAT-AAGAGAGGTAGCA-TAGTCCTGATTA  47

seq1  CAAAGTTGAAAAAGGATAGTAAAAAATTAGAGCAGCTGCACAGATAGAAT  100
       ||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  -AAAGTTG-AAAAGGATAGT-AAAAATTAGAGCAGCTGCACAGATAGAAT  94

seq1  GAATAACTTTACTGATGGGTCAGAGTCCAGTTAACTTAGGAACAAGATGT  150
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  G-ATAAC-TTACTGATGGGTCAGAGTCCAGTTAACTTAGGAACAAGATGT  142

seq1  TTTC-TGTGTATCGGCCCTGTGCCTGGCAGTGTCCGTGGGAAATGTGTAG  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTGTATCGGCCCTGTGCCTGGCAGTGTCCGTGGGAAATGTGTAG  192

seq1  TGTAGGTGTTACTGACGGTGGCTGCGGTTTGACAAAAGGCTAAGCTACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGTTACTGACGGTGGCTGCGGTTTGACAAAAGGCTAAGCTACAA  242

seq1  TGTTGATGTGCCTCTATCTTAGTTTAATTAACAAAGGAGAAGTTATTAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGTGCCTCTATCTTAGTTTAATTAACAAAGGAGAAGTTATTAGC  292

seq1  ATTTAGCATATCTTCTTCACTCTGTGTGTGTGTGTGTGTGCGCGCGCGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCATATCTTCTTCACTCTGTGTGTGTGTGTGTGTGCGCGCGCGTG  342

seq1  CGCTTGCACGTGCATCTGAATGTGTGAAGTGAAATACCATTTAAACTTTT  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGCTTGCACGTGCATTTGAATGTGTGAAGTGAAATACCATTTAAACTTTT  392

seq1  TATTTGATTAGATTTCAGGATTCAGGGTTACGTTTCACTGTTCTCATATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTAGATTTCAGGATTCAGGGTTACGTTTCACTGTTCTCATATG  442

seq1  CTGTTTTGAAGTAATTCATTTGATTACTCATTGGTGAAAATCTTTTAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGAAGTAATTCATTTGATTACTCATTGGTGAAAATCTTTTAGTG  492

seq1  TTACTAATGAAGTAAAATTTTAAAGTTACCAGTTCAGTAGATGCCTGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATGAAGTAAAATTTTAAAGTTACCAGTTCAGTAGATGCCTGAGG  542

seq1  GTTTTTTTTTCCTTAAAAAAATGACATGAAATTTATGTAGGATAACTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTCCTTAAAAAAATGACATGAAATTTATGTAGGATAACTTTT  592

seq1  TTAAAAGGTAAACTGTGTAGTGTCATTTGTATAGTCCTGGTGCTATGCGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGTAAACTGTGTAGTGTCATTTGTATAGTCCTGGTGCTATGCGC  642

seq1  TAAAACCTTTATAAACTTCCAAAACATTTTCTTTACTCCTAAAATCATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTTTATAAACTTCCAAAACATTTTCTTTACTCCTAAAATCATGC  692

seq1  CTCATTAAGCATGAATTTCCCATTAGTCTCTTCGCCCCTAGAAGCAGTCA  749
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  CTCATTAAGCATGAATTTCCCCTTAGTCTTTTCGCCCCTAGAAGCAGTCA  742

seq1  ATTTGATTTTTGGGGTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTT  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTGATTTTTGGGGTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTT  792

seq1  TTTTTTTTTTTTTTTGGTTGGTTGGTTTTGGTTTTTCGAGACAGGGTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGGTTGGTTGGTTTTGGTTTTTCGAGACAGGGTTTC  842

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  892

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  942

seq1  GCGTGCACTACTGCTGCCCGGCTTCAATTTGTTTTTTGTCTCCATAGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCACTACTGCTGCCCGGCTTCAATTTGTTTTTTGTCTCCATAGATT  992

seq1  TACCCATTTGGGATATTTT  1018
      |||||||||||||||||||
seq2  TACCCATTTGGGATATTTT  1011

seq1: chr16_38033996_38034447
seq2: B6Ng01-126B07.g_67_519

seq1  GAATTCCCTCATGCAGACTAGGCTGCCCTTGGCTTGATCTCCAACTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATGCAGACTAGGCTGCCCTTGGCTTGATCTCCAACTCAGA  50

seq1  GTTCCAACCGTTTCCACCTCCTAAGTGCTGGGATTTAAAGGGTGAGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACCGTTTCCACCTCCTAAGTGCTGGGATTTAAAGGGTGAGTCAC  100

seq1  CATCACCCACAACCCACCCACTCCCCCCTCAGTTTTAGTTAGTTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCCACAACCCACCCACTCCCCCCTCAGTTTTAGTTAGTTTTCTTT  150

seq1  TTCAAGACCGTTTCTGTAGGCAACCCTGGCTGTCCTAGTACTCATGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCGTTTCTGTAGGCAACCCTGGCTGTCCTAGTACTCATGTAGC  200

seq1  CCAGGCTGGCCTCGAACTCTGAGATTCATCTGCCTCTGCCTCCTGAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCGAACTCTGAGATTCATCTGCCTCTGCCTCCTGAGTGC  250

seq1  TGGGATTAAAGGTGTGTGCCACCAATACCCAGTTTATTTTTATCTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGTGTGTGCCACCAATACCCAGTTTATTTTTATCTTTGAA  300

seq1  TGTATGTGTATATACATATGTCTGTGCACTGTGTGCTGTGTATACAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTATATACATATGTCTGTGCACTGTGTGCTGTGTATACAGGTG  350

seq1  CCCATAGAGGCCAGAGAGAGTATCAGATCTGAAGCTGCAGTTACTGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGAGGCCAGAGAGAGTATCAGATCTGAAGCTGCAGTTACTGGCAG  400

seq1  TTGTAAGCTGTCCCACATGGGTGCTGGGAACCAA-ATTTGGGTCTTCTAG  449
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TTGTAAGCTGTCCCACATGGGTGCTGGGAACCAATTTTTGGGTCTTCTAG  450

seq1  AGT  452
      | |
seq2  ATT  453