BAC Information

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BAC

Clone NameB6Ng01-126N16
Chromosome16 (Build37)
Map Location 65,496,283 - 65,673,397
singlet/doubletdoublet
Overlap genePou1f1, Chmp2b
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream geneEG383186, Vgll3, LOC664846, LOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N16.bB6Ng01-126N16.g
ACCDH929118DH929119
length841970
definitionDH929118|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N16, 5' end.DH929119|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,672,840 - 65,673,397)(65,496,283 - 65,497,261)
sequence
gaattctatgtttagggctgtacctcactttttctttttgtatgttgttg
ttgttttttgttttgttttgtttttgttttgttttgttttgttttgtttt
ttgagacagggtttctctgtgtagccctggctgtcctggaactcactctg
tagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccaa
gtgctggaattaaaggtgtacatcaccactgcccagctgtacctcatttt
aattggattatttgggttttttggtagttaacttcttgagctctttatat
attttggatattagccttctatcaaatgtagggttagtaaagattttttt
tcccgatcttcaggttactgatttgacctattggtgtcttttgccttaca
gaagcttttcagtttcatgaggtcccatttatcaattgttgatcttagag
cctgggcctttgttgttctgttggggaaatttgccctgtgtcaatgagtt
ctaggctctttcccattttctcctctattcaattcaatgtatatgttttt
tgtattgaggtccttgatccacatggacttgagctttgttcaagatgata
aatatggatctattttcattcttctacactcagacagccagttagaccag
caccatttattaaagatgcttttcatttttcagctgtatgtttctggctt
cttttgtcaaagatgaagtgtccataggtgtgtgggtttatttttattaa
aggtagtaaagtaggaaaatattgaaaaagaatcagatttttttcaactt
ggattaaacataactaccctacacccaacagataaataata
gaattctttaaagccatagaaaagatcagaatgcactgcatgagtgaagg
ccgcactagtgaaatattagttaatcgtctggggtctctttttatgggtt
caatagagaggtaggcctggtggtttgaatgaccagtttctcaagtaggt
gcgtgtagttgaacatttggtccctagctggtggcactgagaggaggagc
aaccttgctagaggaagacggtcccagggagcaggcgttgagagattata
gcttcccccaacttttagttccctctctgctttgtgttggaggttgtggg
tgtgctctctaagcttcctgcccggatgtaagttgctgtgccccctgtgg
cattgtggacttcccttctggatgcctaatcaaagtaaacctttatacac
tacccatggttattatttcttattacagaatcaggaaagtaactaacgtg
gaattttggatagttctctattataattgatagactcgtgtaattttttt
tttcttctgagcatgcctctacccacgatgcacctcatatcaattgtacg
tagtttcatagacatcagagggtacatgagggactctctctacaagttca
cttggaggattcagtgtccctgactgggcatgcacccaaaatctgtccag
gtaggatgatgggtcttctattctttcctacaggatacactgagtatatt
taatagaaactgcccgagtataattgttgttggggaaggggcaacttatc
ctattgttcagagtgcttggagtgaggcagccctgcattgatcggagaag
gagtgtgttcagtacttgcaggtgaggaagctagatggccaccttttatt
cttagagagggagcattataacccaaaccagtggcgtccagctcactaaa
ccattctatgtatgctaatcctgagtaatggttactaatcagaacatatt
ctggctatcttctataatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65672840_65673397
seq2: B6Ng01-126N16.b_327_888 (reverse)

seq1  TATTATTTTTCTGTTGGGTGTAGGGTAGTTATGTTTAATCCAAGTTGAAA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATCTGTTGGGTGTAGGGTAGTTATGTTTAATCCAAGTTGAAA  50

seq1  AAAATCTGATTC-TTTTCAATA-TTTCCTACTTTACTACCTTTAATAAAA  98
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  AAAATCTGATTCTTTTTCAATATTTTCCTACTTTACTACCTTTAATAAAA  100

seq1  ATAAACCCACACACCTATGGACACTTCATCTTTGAC-AAAGAAGCCAGAA  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAAACCCACACACCTATGGACACTTCATCTTTGACAAAAGAAGCCAGAA  150

seq1  ACATACAGCTGAAAAATG-AAAGCATCTTTAATAAATGGTGCTGGTCTAA  196
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACATACAGCTGAAAAATGAAAAGCATCTTTAATAAATGGTGCTGGTCTAA  200

seq1  CTGGCTGTCTGAGTGTAGAAGAATGAAAATAGATCCATATTTATCATCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCTGAGTGTAGAAGAATGAAAATAGATCCATATTTATCATCTT  250

seq1  GAACAAAGCTCAAGTCCATGTGGATCAAGGACCTCAATACAAAAAACATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGCTCAAGTCCATGTGGATCAAGGACCTCAATACAAAAAACATA  300

seq1  TACATTGAATTGAATAGAGGAGAAAATGGGAAAGAGCCTAGAACTCATTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGAATTGAATAGAGGAGAAAATGGGAAAGAGCCTAGAACTCATTG  350

seq1  ACACAGGGCAAATTTCCCCAACAGAACAACAAAGGCCCAGGCTCTAAGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCAAATTTCCCCAACAGAACAACAAAGGCCCAGGCTCTAAGAT  400

seq1  CAACAATTGATAAATGGGACCTCATGAAACTGAAAAGCTTCTGTAAGGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTGATAAATGGGACCTCATGAAACTGAAAAGCTTCTGTAAGGCA  450

seq1  AAAGACACCAATAGGTCAAATCAGTAACCTGAAGATCGGGAAAAAAAATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACCAATAGGTCAAATCAGTAACCTGAAGATCGGGAAAAAAAATC  500

seq1  TTTACTAACCCTACATTTGATAGAAGGCTAATATCCAAAATATATAAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAACCCTACATTTGATAGAAGGCTAATATCCAAAATATATAAAGA  550

seq1  GCTCAAGAAGTT  558
      ||||||||||||
seq2  GCTCAAGAAGTT  562

seq1: chr16_65496283_65497261
seq2: B6Ng01-126N16.g_70_1038

seq1  GAATTCTTTAAAGCCATAGAAAAGATCAGAATGCACTGCATGAGTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGCCATAGAAAAGATCAGAATGCACTGCATGAGTGAAGG  50

seq1  CCGCACTAGTGAAATATTAGTTAATCGTCTGGGGTCTCTTTTTATGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTAGTGAAATATTAGTTAATCGTCTGGGGTCTCTTTTTATGGGTT  100

seq1  CAATAGAGAGGTAGGCCTGGTGGTTTGAATGACCAGTTTCTCAAGTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAGAGGTAGGCCTGGTGGTTTGAATGACCAGTTTCTCAAGTAGGT  150

seq1  GCGTGTAGTTGAACATTTGGTCCCTAGCTGGTGGCACTGAGAGGAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTAGTTGAACATTTGGTCCCTAGCTGGTGGCACTGAGAGGAGGAGC  200

seq1  AACCTTGCTAGAGGAAGACGGTCCCAGGGAGCAGGCGTTGAGAGATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCTAGAGGAAGACGGTCCCAGGGAGCAGGCGTTGAGAGATTATA  250

seq1  GCTTCCCCCAACTTTTAGTTCCCTCTCTGCTTTGTGTTGGAGGTTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCCCAACTTTTAGTTCCCTCTCTGCTTTGTGTTGGAGGTTGTGGG  300

seq1  TGTGCTCTCTAAGCTTCCTGCCCGGATGTAAGTTGCTGTGCCCCCTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTCTAAGCTTCCTGCCCGGATGTAAGTTGCTGTGCCCCCTGTGG  350

seq1  CATTGTGGACTTCCCTTCTGGATGCCTAATCAAAGTAAACCTTTATACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGACTTCCCTTCTGGATGCCTAATCAAAGTAAACCTTTATACAC  400

seq1  TACCCATGGTTATTATTTCTTATTACAGAATCAGGAAAGTAACTAACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGGTTATTATTTCTTATTACAGAATCAGGAAAGTAACTAACGTG  450

seq1  GAATTTTGGATAGTTCTCTATTATAATTGATAGACTCGTGTAATTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGGATAGTTCTCTATTATAATTGATAGACTCGTGTAATTTTTTT  500

seq1  TTTCTTCTGAGCATGCCTCTACCCACGATGCACCTCATATCAATTGTACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGAGCATGCCTCTACCCACGATGCACCTCATATCAATTGTACG  550

seq1  TAGTTTCATAGACATCAGAGGGTACATGAGGGACTCTCTCTACAAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCATAGACATCAGAGGGTACATGAGGGACTCTCTCTACAAGTTCA  600

seq1  CTTGGAGGATTCAGTGTCCCTGACTGGGCATGCACCCAAAATCTGTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGATTCAGTGTCCCTGACTGGGCATGCACCCAAAATCTGTCCAG  650

seq1  GTAGGATGATGGGTCTTCTATTCTTTCCTACAGGATACACTGAGTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGATGGGTCTTCTATTCTTTCCTACAGGATACACTGAGTATATT  700

seq1  TAAATAGAAACTGCCCGAGTATAATTGTTGTTGGGGAAGGGGCAACTTAT  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AATAGAAACTGCCCGAGTATAATTGTTGTTGGGGAAGGGGCAACTTAT  749

seq1  CCTATTGTTCAGAGTGCTTGGAGTGAGGCAGCCCTGCATTGATCGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGTTCAGAGTGCTTGGAGTGAGGCAGCCCTGCATTGATCGGAGAA  799

seq1  GGAGTGTGTTCAGTACTTGCAGGTGAGGAAGCTAGATGGCCACC-TTTAT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAGTGTGTTCAGTACTTGCAGGTGAGGAAGCTAGATGGCCACCTTTTAT  849

seq1  TCTTAGAAGAGGGAGCATTCATAACCCAAACCAGGTGGCGTCCCAGCTCA  899
      |||||| |||||||||||| ||||||||||||| ||||||| ||||||||
seq2  TCTTAG-AGAGGGAGCATT-ATAACCCAAACCA-GTGGCGT-CCAGCTCA  895

seq1  CTAAACCATTTCTTATGTATGCCTAATTCTGAGTATAATTGTTTACTAAT  949
      ||||||||||   |||||||| ||||| ||||||   | || ||||||||
seq2  CTAAACCATT--CTATGTATG-CTAATCCTGAGT---AATGGTTACTAAT  939

seq1  CAAAACATATATCTGGGTATCTTCTA-AATA  979
      || ||||||| ||||| ||||||||| ||||
seq2  CAGAACATAT-TCTGGCTATCTTCTATAATA  969