BAC Information

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BAC

Clone NameB6Ng01-127O05
Chromosome16 (Build37)
Map Location 81,988,972 - 82,139,084
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O05.bB6Ng01-127O05.g
ACCDH929884DH929885
length1,205873
definitionDH929884|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O05, 5' end.DH929885|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,137,853 - 82,139,084)(81,988,972 - 81,989,840)
sequence
gaattcatttggttcttgtagaattgataatcatgttttcttttttggtg
gattcatttttaatctgttcttcagtgctaaatgtttcccacttgtttgg
ggtgtccttgttataactccagaaggatattttgcttacatcctttcctg
attcatatatgacactgcttatttgttttgtggcccagatacagtgatct
cagtcaagttatcatagctttgactgcaataagaaaacctcccttatcat
gtcacatttgatatgtcagtatatttccaggtcgcattgactaaagagtg
gaggagttaattcttaggatgtgtgcttttatgtagcaatttcagaatca
tctaaactatgtacctgcataaatattaacagaaaattataagaatgata
atgtatttaaaaacaccaaagtacatataaatagaatcaaaatctagaaa
ctctacagaaaaataaatatgttctctttgctgaatcctaaggatttaat
tattatttaggattattgagacaacccaaagtttatggatctctttatac
agtttaacaattgaatgaatatacaatgggtagtttttattgataaatat
ttgctataaaaattcagaaggaacattaaagagttacccttttggaaatt
ttaatcgacgagtgtacctaggcaaatactatgaatcatctttagcctag
cagataaagtattactttattaattgtcaatgaatagggtggaaacatcc
agcgcacagatccacactaatgtatttaaagtcaggatgaccagagactg
cctgccgcctgtataatggaataggaagtttaaaaatctttttacacacg
catctccccaataactagatctgattataacatgacctcggggacagaaa
tctgttttgcagaagcaagaacacagaagcaggaaagtgcctggtacatt
tcacaatgtggcctgaaaagaaatgtagctctatacataggcagtttcag
tgcagcgaccaaaccaacagtacaccatcatcatctatcttgagaaaacg
accactctagtaagaatacaaatgaggaacatcataatttgctccaaaca
gtaggatggggagtccctttacattactgataagtcccgggaatctgagt
taatctcacttccgaatgtttatatcatttatgaaggatccgttgcatgt
ctcta
gaattctgtctgatacaattgttgataagtgaattaatattataaaatta
tattaattgagtgcacaaatttgttacaaatatattatagaatataaagt
aattctaatatctctaaatgtatttattaatctaagcattatctagtgtg
tttatacacatgcattttatatatacatatatgaatgtatatataaaatg
caattcaaactttaaaaattgaatagagtatatttgtctttatttttatt
atgttacagaacagaaaatcatcctgagggtcatgtgttgaatgtcttgt
tctcaattcatcaatgtttagacctggattactgggacaggatcggcaca
aaggcctccaagtttttcaatgaatgattccgtttatttgttcataagtt
aatgtgggatttatatttaaagccttgttgggtaaaccaagcatttgaaa
cttgacattgaaagatgatttttttttttttgctcaactcctctctccta
tttttcatgtacccgtttttgaaacctgaaaatataggttatttaccaga
aaacaaaatcaagcagttaataggaagtgttcggctatgggcatgattac
tttttatgataagagattgcttttttcacatgatgaaactcttcttaggc
tgagagccttcctttccttatttttggctctgaggaggtatgtcactgtt
aacatttttaatggcagaagggctaatcatacctattacctttcagtgct
catgaaattgatggcctcactttgacactataaagtggggtcatcccaac
aaactggaaagcaaacacttccttaatgaggtctcaaatgacaccactcc
ctggtcaccacttgagcaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82137853_82139084
seq2: B6Ng01-127O05.b_48_1252 (reverse)

seq1  TAGAGACATGCAAACAGATACCTGTACATATAAATAGAATAAAATAATAT  50
      ||||||||||| ||| ||| | |      ||||||   |||    || ||
seq2  TAGAGACATGC-AACGGATCCTT-----CATAAATGATATA----AACAT  40

seq1  CTGAAAGTAGATATTAACTCAGATT--CAGGACTTATCAGTATATTGTTA  98
        | |||| || |||||||||||||  | |||||||||||  || ||| |
seq2  TCGGAAGT-GAGATTAACTCAGATTCCCGGGACTTATCAG--TAATGTAA  87

seq1  ATATGATATTTTCCCAT-CTACTGTTTTTGAAGCAAATTTATGATGTTCC  147
      |   |  |  | ||||| ||||||  |||| |||||| |||||||||| |
seq2  A---GGGA-CTCCCCATCCTACTG--TTTGGAGCAAA-TTATGATGTT-C  129

seq1  CTCATTTGTATCTTTACTAGAGT-GTCGTTTTTCCTCAAGATAGATGATG  196
      |||||||||||  |||||||||| ||||||||  ||||||||||||||||
seq2  CTCATTTGTATTCTTACTAGAGTGGTCGTTTT--CTCAAGATAGATGATG  177

seq1  ATGGTGTACCTGTTGGTTTTGGTCGCTGCACTTGAAACTGCCCTATGTTA  246
      |||||||| ||||||| |||||||||||||| |||||||| |||||| ||
seq2  ATGGTGTA-CTGTTGG-TTTGGTCGCTGCAC-TGAAACTG-CCTATG-TA  222

seq1  TAAGAGCCTACATTTCTTTTCAGGCCACATTGTGAAATGTACCAGGCACC  296
      | |||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  T-AGAG-CTACATTTCTTTTCAGGCCACATTGTGAAATGTACCAGGCA-C  269

seq1  TTTCCTGCTTCTGTGTTCTTGCTTCTGCAAAACAGATTTCTGTCCCCGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCTTCTGTGTTCTTGCTTCTGCAAAACAGATTTCTGTCCCCGAG  319

seq1  GTCATGTTATAATCAGATCTAGTTATTGGGGAGATGCGTGTGTAAAAAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTATAATCAGATCTAGTTATTGGGGAGATGCGTGTGTAAAAAGA  369

seq1  TTTTTAAACTTCCTATTCCATTATACAGGCGGCAGGCAGTCTCTGGTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACTTCCTATTCCATTATACAGGCGGCAGGCAGTCTCTGGTCAT  419

seq1  CCTGACTTTAAATACATTAGTGTGGATCTGTGCGCTGGATGTTTCCACCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTTAAATACATTAGTGTGGATCTGTGCGCTGGATGTTTCCACCC  469

seq1  TATTCATTGACAATTAATAAAGTAATACTTTATCTGCTAGGCTAAAGATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGACAATTAATAAAGTAATACTTTATCTGCTAGGCTAAAGATG  519

seq1  ATTCATAGTATTTGCCTAGGTACACTCGTCGATTAAAATTTCCAAAAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAGTATTTGCCTAGGTACACTCGTCGATTAAAATTTCCAAAAGGG  569

seq1  TAACTCTTTAATGTTCCTTCTGAATTTTTATAGCAAATATTTATCAATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTAATGTTCCTTCTGAATTTTTATAGCAAATATTTATCAATAA  619

seq1  AAACTACCCATTGTATATTCATTCAATTGTTAAACTGTATAAAGAGATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCCATTGTATATTCATTCAATTGTTAAACTGTATAAAGAGATCC  669

seq1  ATAAACTTTGGGTTGTCTCAATAATCCTAAATAATAATTAAATCCTTAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTTGGGTTGTCTCAATAATCCTAAATAATAATTAAATCCTTAGG  719

seq1  ATTCAGCAAAGAGAACATATTTATTTTTCTGTAGAGTTTCTAGATTTTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAAAGAGAACATATTTATTTTTCTGTAGAGTTTCTAGATTTTGA  769

seq1  TTCTATTTATATGTACTTTGGTGTTTTTAAATACATTATCATTCTTATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTATATGTACTTTGGTGTTTTTAAATACATTATCATTCTTATAA  819

seq1  TTTTCTGTTAATATTTATGCAGGTACATAGTTTAGATGATTCTGAAATTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTAATATTTATGCAGGTACATAGTTTAGATGATTCTGAAATTG  869

seq1  CTACATAAAAGCACACATCCTAAGAATTAACTCCTCCACTCTTTAGTCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAAAAGCACACATCCTAAGAATTAACTCCTCCACTCTTTAGTCAA  919

seq1  TGCGACCTGGAAATATACTGACATATCAAATGTGACATGATAAGGGAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACCTGGAAATATACTGACATATCAAATGTGACATGATAAGGGAGGT  969

seq1  TTTCTTATTGCAGTCAAAGCTATGATAACTTGACTGAGATCACTGTATCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTGCAGTCAAAGCTATGATAACTTGACTGAGATCACTGTATCT  1019

seq1  GGGCCACAAAACAAATAAGCAGTGTCATATATGAATCAGGAAAGGATGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACAAAACAAATAAGCAGTGTCATATATGAATCAGGAAAGGATGTA  1069

seq1  AGCAAAATATCCTTCTGGAGTTATAACAAGGACACCCCAAACAAGTGGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATATCCTTCTGGAGTTATAACAAGGACACCCCAAACAAGTGGGA  1119

seq1  AACATTTAGCACTGAAGAACAGATTAAAAATGAATCCACCAAAAAAGAAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAGCACTGAAGAACAGATTAAAAATGAATCCACCAAAAAAGAAA  1169

seq1  ACATGATTATCAATTCTACAAGAACCAAATGAATTC  1232
      ||||||||||||||||||||||||||||||||||||
seq2  ACATGATTATCAATTCTACAAGAACCAAATGAATTC  1205

seq1: chr16_81988972_81989840
seq2: B6Ng01-127O05.g_67_934

seq1  GAATTCTGTCTGATACAATTGTTGATAAGTGAATTAATATTATAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGATACAATTGTTGATAAGTGAATTAATATTATAAAATTA  50

seq1  TATTAATTGAGTGCACAAATTTGTTACAAATATATTATAGAATATAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTGAGTGCACAAATTTGTTACAAATATATTATAGAATATAAAGT  100

seq1  AATTCTAATATCTCTAAATGTATTTATTAATCTAAGCATTATCTAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATATCTCTAAATGTATTTATTAATCTAAGCATTATCTAGTGTG  150

seq1  TTTATACACATGCATTTTATATATACATATATGAATGTATATATAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACACATGCATTTTATATATACATATATGAATGTATATATAAAATG  200

seq1  CAATTCAAACTTTAAAAATTGAATAGAGTATATTTGTCTTTATTTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAACTTTAAAAATTGAATAGAGTATATTTGTCTTTATTTTTATT  250

seq1  ATGTTACAGAACAGAAAATCATCCTGAGGGTCATGTGTTGAATGTCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAGAACAGAAAATCATCCTGAGGGTCATGTGTTGAATGTCTTGT  300

seq1  TCTCAATTCATCAATGTTTAGACCTGGATTACTGGGACAGGATCGGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTCATCAATGTTTAGACCTGGATTACTGGGACAGGATCGGCACA  350

seq1  AAGGCCTCCAAGTTTTTCAATGAATGATTCCGTTTATTTGTTCATAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTCCAAGTTTTTCAATGAATGATTCCGTTTATTTGTTCATAAGTT  400

seq1  AATGTGGGATTTATATTTAAAGCCTTGTTGGGTAAACCAAGCATTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGATTTATATTTAAAGCCTTGTTGGGTAAACCAAGCATTTGAAA  450

seq1  CTTGACATTGAAAGATGATTTTTTTTTTTTTGCTCAACTCCTCTCTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATTGAAAGATGATTTTTTTTTTTTTGCTCAACTCCTCTCTCCTA  500

seq1  TTTTTCATGTACCCGTTTTTGAAACCTGAAAATATAGGTTATTTACCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATGTACCCGTTTTTGAAACCTGAAAATATAGGTTATTTACCAGA  550

seq1  AAACAAAATCAAGCAGTTAATAGGAAGTGTTCGGCTATGGGCATGATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATCAAGCAGTTAATAGGAAGTGTTCGGCTATGGGCATGATTAC  600

seq1  TTTTTATGATAAGAGATTGCTTTTTTCACATGATGAAACTCTTCTTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGATAAGAGATTGCTTTTTTCACATGATGAAACTCTTCTTAGGC  650

seq1  TGAGAGCCTTCCTTTCCTTATTTTTGGCTCTGAGGAGGTATGTCACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCTTCCTTTCCTTATTTTTGGCTCTGAGGAGGTATGTCACTGTT  700

seq1  AACATTTTTAATGGCAGAAGGGCTAATCATACCTATTACCTTTCAGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTAATGGCAGAAGGGCTAATCATACCTATTACCTTTCAGTGCT  750

seq1  CATGAAATTGATGGCCTCACTTTGACACTATAAAGT-GAGTCATCCCAAC  799
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  CATGAAATTGATGGCCTCACTTTGACACTATAAAGTGGGGTCATCCCAAC  800

seq1  AAAACTGGAAAGCAAACACTTCCTTAATTGAGTCTCAAATGACACCACTC  849
       |||||||||||||||||||||||||||   |||||||||||||||||||
seq2  -AAACTGGAAAGCAAACACTTCCTTAATGAGGTCTCAAATGACACCACTC  849

seq1  CCTGGTCACCACTTTGAGCA  869
      |||||||||||| |||||||
seq2  CCTGGTCACCAC-TTGAGCA  868