BAC Information

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BAC

Clone NameB6Ng01-129O10
Chromosome16 (Build37)
Map Location 9,621,458 - 9,754,335
singlet/doubletdoublet
Overlap geneGrin2a
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129O10.bB6Ng01-129O10.g
ACCDH931366DH931367
length1,2211,046
definitionDH931366|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O10, 5' end.DH931367|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,621,458 - 9,622,673)(9,753,265 - 9,754,335)
sequence
gaattcctaccaatgtgtctatgtcccatgtgagtgccaagtgaccgcag
aagctacgaaagggcatcagatgccctggtactggagtaccagtaccagt
accaaccagcactttacaagtaggaaaggtgtctgaaaggtaagttaact
tgtgcaagagctcccaactgagttttcgcagagaggacatttaaatctag
gaaactaagttctggataccctgtcacattgtagaagtgatgggatatga
agacttgttagatcccaggactgaaagacaaggaagctgtacatccagca
aacataaaagaaagaaagaacataaatcagtcacattctagaaggtgcag
gacttgatgccgatagctctcctaagtccaagtatctaattctccatggg
ggataagtcaagagatcttccagatacagaaagggaataggctcagatca
ttattcaattagttaaaaggcacatagcaaagatggtaactggagccagg
gtgtaaaactgagtctttctcattcctaaatccacaatcgatcaagaagc
cactcagaaaggaggcaaattaaaaaatctcagtcagttggccacagaag
actaaagtttcaggaacatatgaatatttgaggattctatctgccctcat
ccccaaagaacgacttgcagaagaaaccatagggttcattacaatgttta
agacaggcctctgactgatggcccttggctacctggataatctctgctga
aggaaatgctcgagtaaactgtgatgcatgaacatggaggcttttccagc
agcccaagaggatgaaggcaaaaatacctacatatccagaagctcatcaa
aacaaagtaattgaaaaccctgacctactggttatagtcaaatggcatct
gcagaaataaaatgtgtattataggtggacgcataaaatagatgcaaatg
taaaacagcaaagttctaagaagaaatggactattacattcaatcaatga
ttatccagccaggggtgtttgatgtggtgcatggtcaatggtgtaataac
tcatctcggtcatcttttcattttggctgggagaattgttttattaatga
gaatgcagacagcatgattggtccagagcaagctctcaagaacagtccat
cctacgctttgaagtcactggtcttgtgcggaacgataacaataacacgg
gaattccccatctgttatagc
gaattcactgcattggaaacacttgggtacatctccagcacaaaggaagg
ggagaaacaccctctactgcttttatggattcgtatctgaaagaacctta
tctgagcgtctcttctatcaactacctgaccctggaaatcaggcttctgc
tcaaagcaagagcactgtaagttcccctaacaggaaaggggaaagagtca
gagtggtcctgagttcaacccctgtccaggtaacactaacactccccctt
gatgcagtccaaggaagtggaacaaaaaaaggttccaggtttaatggccc
actgaaagactgcactaaacctgcttggcgtgtttttatttgataatcag
agttctcactgttggtttcttttaaaatgccaataaaagatcctgcttgg
ttgattctccaagcttgatggcactcaagcttccctgggtgaatgtgata
actctttgcaaatatttatcagtgggatcagcatttgctgcacaaacatt
tctggcaatgcgctagctaccccagagaacacagtatcctgtgggcctct
gctgtttctgttgatggggacccttaattcagggacaggaagtgtgaccc
agagtaagtcagcaaagaagaggtgtaatgagagaacacaggggcagatg
ccaaactgagacaaaggtattctgcagcaggctctgactgtagaatgtag
atctctaaacagtgccctgcctctgctgggcaagtgacttaacttgtccg
tctccttatttgcaaacgtgagaccaaccgaagcatctgtggggaaggtg
gtgccgatgacacatgtgtgaacacccaggtacagttggtactttgcagg
taccacttctgatgtgcctccctcctgtgtcttgctggacccagacggtg
ggttgagtgctctgggtatcgagtcccgtagcttagtcagcagcgtcttc
tgaaccagcttctccttctggctgagtcaaaagcacgttgcaccccgcaa
tggcagtcatcatcaatggcatcagtgaatgctcgacaatgtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_9621458_9622673
seq2: B6Ng01-129O10.b_51_1271

seq1  GAATTCCTACCAATGTGTCTATGTCCCATGTGAGTGCCAAGTGACCGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCAATGTGTCTATGTCCCATGTGAGTGCCAAGTGACCGCAG  50

seq1  AAGCTACGAAAGGGCATCAGATGCCCTGGTACTGGAGTACCAGTACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACGAAAGGGCATCAGATGCCCTGGTACTGGAGTACCAGTACCAGT  100

seq1  ACCAACCAGCACTTTACAAGTAGGAAAGGTGTCTGAAAGGTAAGTTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAGCACTTTACAAGTAGGAAAGGTGTCTGAAAGGTAAGTTAACT  150

seq1  TGTGCAAGAGCTCCCAACTGAGTTTTCGCAGAGAGGACATTTAAATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGAGCTCCCAACTGAGTTTTCGCAGAGAGGACATTTAAATCTAG  200

seq1  GAAACTAAGTTCTGGATACCCTGTCACATTGTAGAAGTGATGGGATATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAGTTCTGGATACCCTGTCACATTGTAGAAGTGATGGGATATGA  250

seq1  AGACTTGTTAGATCCCAGGACTGAAAGACAAGGAAGCTGTACATCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTTAGATCCCAGGACTGAAAGACAAGGAAGCTGTACATCCAGCA  300

seq1  AACATAAAAGAAAGAAAGAACATAAATCAGTCACATTCTAGAAGGTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAAGAAAGAAAGAACATAAATCAGTCACATTCTAGAAGGTGCAG  350

seq1  GACTTGATGCCGATAGCTCTCCTAAGTCCAAGTATCTAATTCTCCATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATGCCGATAGCTCTCCTAAGTCCAAGTATCTAATTCTCCATGGG  400

seq1  GGATAAGTCAAGAGATCTTCCAGATACAGAAAGGGAATAGGCTCAGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGTCAAGAGATCTTCCAGATACAGAAAGGGAATAGGCTCAGATCA  450

seq1  TTATTCAATTAGTTAAAAGGCACATAGCAAAGATGGTAACTGGAGCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAATTAGTTAAAAGGCACATAGCAAAGATGGTAACTGGAGCCAGG  500

seq1  GTGTAAAACTGAGTCTTTCTCATTCCTAAATCCACAATCGATCAAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAACTGAGTCTTTCTCATTCCTAAATCCACAATCGATCAAGAAGC  550

seq1  CACTCAGAAAGGAGGCAAATTAAAAAATCTCAGTCAGTTGGCCACAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAAAGGAGGCAAATTAAAAAATCTCAGTCAGTTGGCCACAGAAG  600

seq1  ACTAAAGTTTCAGGAACATATGAATATTTGAGGATTCTATCTGCCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTTTCAGGAACATATGAATATTTGAGGATTCTATCTGCCCTCAT  650

seq1  CCCCAAAGAACGACTTGCAGAAGAAACCATAGGGTTCATTACAATGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGAACGACTTGCAGAAGAAACCATAGGGTTCATTACAATGTTTA  700

seq1  AGACAGGCCTCTGACTGATGGCCCTTGGCTACCTGGATAATCTCTGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCCTCTGACTGATGGCCCTTGGCTACCTGGATAATCTCTGCTGA  750

seq1  AGGAAATGCTCGAGTAAACTGTGATGCATGAACATGGAGGCTTTTCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCTCGAGTAAACTGTGATGCATGAACATGGAGGCTTTTCCAGC  800

seq1  AGCCCAAGAGGATGAAGGCAAAAATACCTACATATCCAGAAGCTCATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGAGGATGAAGGCAAAAATACCTACATATCCAGAAGCTCATCAA  850

seq1  AACAAAGTAATTGAAAACCCTGACCTACTGGTTATAGTCAAATGGCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTAATTGAAAACCCTGACCTACTGGTTATAGTCAAATGGCATCT  900

seq1  GCAGAAATAAAATGTGTAATTATAGGTGGACGCAT-AAATAGATGCAAAT  949
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GCAGAAATAAAATGTGT-ATTATAGGTGGACGCATAAAATAGATGCAAAT  949

seq1  GT-ATACAGCAAAGGTCTAAG-AGAAATGGACTA-TACATCAAATCAATG  996
      || | ||||||||| |||||| |||||||||||| |||||  ||||||||
seq2  GTAAAACAGCAAAGTTCTAAGAAGAAATGGACTATTACATTCAATCAATG  999

seq1  ATTATCCAGCCAGGGGTGGTTTGATGTTGGTGCATGGTCAATGTGGTAAT  1046
      ||||||||||||||||| |||||||| ||||||||||||||||  |||||
seq2  ATTATCCAGCCAGGGGT-GTTTGATG-TGGTGCATGGTCAATGGTGTAAT  1047

seq1  TACTCATCTCCGGTCATCTTTTCATTTTGGCT-GGAGAATTGTTTTA-TA  1094
       |||||||| |||||||||||||||||||||| |||||||||||||| ||
seq2  AACTCATCT-CGGTCATCTTTTCATTTTGGCTGGGAGAATTGTTTTATTA  1096

seq1  ATGAG-ATGCAGACAGCATGA-TGGTCCAGAGCAAAGCTC-CAAGAACAA  1141
      ||||| ||||||||||||||| ||||||||||| |||||| ||||||| |
seq2  ATGAGAATGCAGACAGCATGATTGGTCCAGAGC-AAGCTCTCAAGAAC-A  1144

seq1  GTTCAT-CTCAGCTTTGAAGTTCACTGGTTCTGTGCTTGAGCAGTAAC-A  1189
      || ||| ||  ||||||||| ||||||||  |||||  || |  |||| |
seq2  GTCCATCCTACGCTTTGAAG-TCACTGGTCTTGTGC-GGAACGATAACAA  1192

seq1  TAAC-CAGTGATTCCCCATCTG-TATAGC  1216
      |||| | |  |||||||||||| ||||||
seq2  TAACACGGGAATTCCCCATCTGTTATAGC  1221

seq1: chr16_9753265_9754335
seq2: B6Ng01-129O10.g_69_1114 (reverse)

seq1  TTCCACCATTTGTCGAGCTATTCACTGGATGCCAATTGGAAATGATTGAC  50
      ||||||   ||||||||| ||||||| |||||| ||||   |||| ||||
seq2  TTCCAC--ATTGTCGAGC-ATTCACT-GATGCC-ATTG---ATGA-TGAC  41

seq1  TGCCATTGCGGGGTTGGCATACGGTGCTTTTGACTTCCAGCCAGAAGAGA  100
      ||||||||||||||  ||| || ||||||||||||  |||||||||| ||
seq2  TGCCATTGCGGGGT--GCA-AC-GTGCTTTTGACT--CAGCCAGAAG-GA  84

seq1  GAAGGCTGGGTTCCAGGAAGGACGCTGCTGACTAAGCTACGGGACTCGAT  150
      ||| |||||  | |||  | ||||||||||||||||||||||||||||||
seq2  GAA-GCTGG--TTCAG--AAGACGCTGCTGACTAAGCTACGGGACTCGAT  129

seq1  ACCCAGAGCACTCAACCCACCCGTCCTGGGTCCAGCAAGACACAGGAGGG  200
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  ACCCAGAGCACTCAACCCA-CCGT-CTGGGTCCAGCAAGACACAGGAGGG  177

seq1  AGGCAACATCAAGAAGTGTACCCTGCAAAGTACCAACTGTACCCTGGGTG  250
      |||| ||||| |||||||   |||||||||||||||||||| ||||||||
seq2  AGGC-ACATC-AGAAGTGGTACCTGCAAAGTACCAACTGTA-CCTGGGTG  224

seq1  TTCACACATGTGTCATCGGCACCACCTTCCCCACAGATGCTTCGGTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACATGTGTCATCGGCACCACCTTCCCCACAGATGCTTCGGTTGGT  274

seq1  CTCACGTTTGCAAATAAGGAGACGGACAAGTTAAGTCACTTGCCCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTTTGCAAATAAGGAGACGGACAAGTTAAGTCACTTGCCCAGCAG  324

seq1  AGGCAGGGCACTGTTTAGAGATCTACATTCTACAGTCAGAGCCTGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGCACTGTTTAGAGATCTACATTCTACAGTCAGAGCCTGCTGCA  374

seq1  GAATACC-TTGTCTCAGTTTGGCATCTGCCCCTGTGTTCTCTCATTACAC  449
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCTTTGTCTCAGTTTGGCATCTGCCCCTGTGTTCTCTCATTACAC  424

seq1  CTCTTCTTTGCTGACTTACTCTGGGTCACACTTCCTGTCCCTGAATTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTGCTGACTTACTCTGGGTCACACTTCCTGTCCCTGAATTAAG  474

seq1  GGTCCCCATCAACAGAAACAGCAGAGGCCCACAGGATACTGTGTTCTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCATCAACAGAAACAGCAGAGGCCCACAGGATACTGTGTTCTCTG  524

seq1  GGGTAGCTAGCGCATTGCCAGAAATGTTTGTGCAGCAAATGCTGATCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTAGCGCATTGCCAGAAATGTTTGTGCAGCAAATGCTGATCCCA  574

seq1  CTGATAAATATTTGCAAAGAGTTATCACATTCACCCAGGGAAGCTTGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATATTTGCAAAGAGTTATCACATTCACCCAGGGAAGCTTGAGT  624

seq1  GCCATCAAGCTTGGAGAATCAACCAAGCAGGATCTTTTATTGGCATTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAAGCTTGGAGAATCAACCAAGCAGGATCTTTTATTGGCATTTTA  674

seq1  AAAGAAACCAACAGTGAGAACTCTGATTATCAAATAAAAACACGCCAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCAACAGTGAGAACTCTGATTATCAAATAAAAACACGCCAAGC  724

seq1  AGGTTTAGTGCAGTCTTTCAGTGGGCCATTAAACCTGGAACCTTTTTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGTGCAGTCTTTCAGTGGGCCATTAAACCTGGAACCTTTTTTTG  774

seq1  TTCCACTTCCTTGGACTGCATCAAGGGGGAGTGTTAGTGTTACCTGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCCTTGGACTGCATCAAGGGGGAGTGTTAGTGTTACCTGGACA  824

seq1  GGGGTTGAACTCAGGACCACTCTGACTCTTTCCCCTTTCCTGTTAGGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGAACTCAGGACCACTCTGACTCTTTCCCCTTTCCTGTTAGGGGA  874

seq1  ACTTACAGTGCTCTTGCTTTGAGCAGAAGCCTGATTTCCAGGGTCAGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGTGCTCTTGCTTTGAGCAGAAGCCTGATTTCCAGGGTCAGGTA  924

seq1  GTTGATAGAAGAGACGCTCAGATAAGGTTCTTTCAGATACGAATCCATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGAAGAGACGCTCAGATAAGGTTCTTTCAGATACGAATCCATAA  974

seq1  AAGCAGTAGAGGGTGTTTCTCCCCTTCCTTTGTGCTGGAGATGTACCCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGAGGGTGTTTCTCCCCTTCCTTTGTGCTGGAGATGTACCCAA  1024

seq1  GTGTTTCCAATGCAGTGAATTC  1071
      ||||||||||||||||||||||
seq2  GTGTTTCCAATGCAGTGAATTC  1046